Linking Plant Secondary Metabolites and Plant Microbiomes: A Review
Plant secondary metabolites (PSMs) play many roles including defense against pathogens, pests, and herbivores; response to environmental stresses, and mediating organismal interactions. Similarly, plant microbiomes participate in many of the above-mentioned processes directly or indirectly by regula...
Uloženo v:
| Vydáno v: | Frontiers in plant science Ročník 12; s. 621276 |
|---|---|
| Hlavní autoři: | , , , , , , , |
| Médium: | Journal Article |
| Jazyk: | angličtina |
| Vydáno: |
Switzerland
Frontiers Media SA
02.03.2021
Frontiers Media S.A |
| Témata: | |
| ISSN: | 1664-462X, 1664-462X |
| On-line přístup: | Získat plný text |
| Tagy: |
Přidat tag
Žádné tagy, Buďte první, kdo vytvoří štítek k tomuto záznamu!
|
| Abstract | Plant secondary metabolites (PSMs) play many roles including defense against pathogens, pests, and herbivores; response to environmental stresses, and mediating organismal interactions. Similarly, plant microbiomes participate in many of the above-mentioned processes directly or indirectly by regulating plant metabolism. Studies have shown that plants can influence their microbiome by secreting various metabolites and, in turn, the microbiome may also impact the metabolome of the host plant. However, not much is known about the communications between the interacting partners to impact their phenotypic changes. In this article, we review the patterns and potential underlying mechanisms of interactions between PSMs and plant microbiomes. We describe the recent developments in analytical approaches and methods in this field. The applications of these new methods and approaches have increased our understanding of the relationships between PSMs and plant microbiomes. Though the current studies have primarily focused on model organisms, the methods and results obtained so far should help future studies of agriculturally important plants and facilitate the development of methods to manipulate PSMs–microbiome interactions with predictive outcomes for sustainable crop productions. |
|---|---|
| AbstractList | Plant secondary metabolites (PSMs) play many roles including defense against pathogens, pests, and herbivores; response to environmental stresses, and mediating organismal interactions. Similarly, plant microbiomes participate in many of the above-mentioned processes directly or indirectly by regulating plant metabolism. Studies have shown that plants can influence their microbiome by secreting various metabolites and, in turn, the microbiome may also impact the metabolome of the host plant. However, not much is known about the communications between the interacting partners to impact their phenotypic changes. In this article, we review the patterns and potential underlying mechanisms of interactions between PSMs and plant microbiomes. We describe the recent developments in analytical approaches and methods in this field. The applications of these new methods and approaches have increased our understanding of the relationships between PSMs and plant microbiomes. Though the current studies have primarily focused on model organisms, the methods and results obtained so far should help future studies of agriculturally important plants and facilitate the development of methods to manipulate PSMs–microbiome interactions with predictive outcomes for sustainable crop productions. Plant secondary metabolites (PSMs) play many roles including defense against pathogens, pests, and herbivores; response to environmental stresses, and mediating organismal interactions. Similarly, plant microbiomes participate in many of the above-mentioned processes directly or indirectly by regulating plant metabolism. Studies have shown that plants can influence their microbiome by secreting various metabolites and, in turn, the microbiome may also impact the metabolome of the host plant. However, not much is known about the communications between the interacting partners to impact their phenotypic changes. In this article, we review the patterns and potential underlying mechanisms of interactions between PSMs and plant microbiomes. We describe the recent developments in analytical approaches and methods in this field. The applications of these new methods and approaches have increased our understanding of the relationships between PSMs and plant microbiomes. Though the current studies have primarily focused on model organisms, the methods and results obtained so far should help future studies of agriculturally important plants and facilitate the development of methods to manipulate PSMs-microbiome interactions with predictive outcomes for sustainable crop productions.Plant secondary metabolites (PSMs) play many roles including defense against pathogens, pests, and herbivores; response to environmental stresses, and mediating organismal interactions. Similarly, plant microbiomes participate in many of the above-mentioned processes directly or indirectly by regulating plant metabolism. Studies have shown that plants can influence their microbiome by secreting various metabolites and, in turn, the microbiome may also impact the metabolome of the host plant. However, not much is known about the communications between the interacting partners to impact their phenotypic changes. In this article, we review the patterns and potential underlying mechanisms of interactions between PSMs and plant microbiomes. We describe the recent developments in analytical approaches and methods in this field. The applications of these new methods and approaches have increased our understanding of the relationships between PSMs and plant microbiomes. Though the current studies have primarily focused on model organisms, the methods and results obtained so far should help future studies of agriculturally important plants and facilitate the development of methods to manipulate PSMs-microbiome interactions with predictive outcomes for sustainable crop productions. |
| Author | Gao, Chunsheng Cheng, Yi Li, Zhimin Guo, Litao Pang, Zhiqiang Chen, Jia Wang, Tuhong Xu, Jianping |
| AuthorAffiliation | 3 College of Life Sciences, University of Chinese Academy of Sciences , Beijing , China 2 CAS Key Laboratory of Tropical Plant Resources and Sustainable Use, Xishuangbanna Tropical Botanical Garden, Chinese Academy of Sciences , Kunming , China 1 Institute of Bast Fiber Crops and Center of Southern Economic Crops, Chinese Academy of Agricultural Sciences , Changsha , China 4 Department of Biology, McMaster University , Hamilton, ON , Canada |
| AuthorAffiliation_xml | – name: 1 Institute of Bast Fiber Crops and Center of Southern Economic Crops, Chinese Academy of Agricultural Sciences , Changsha , China – name: 4 Department of Biology, McMaster University , Hamilton, ON , Canada – name: 2 CAS Key Laboratory of Tropical Plant Resources and Sustainable Use, Xishuangbanna Tropical Botanical Garden, Chinese Academy of Sciences , Kunming , China – name: 3 College of Life Sciences, University of Chinese Academy of Sciences , Beijing , China |
| Author_xml | – sequence: 1 givenname: Zhiqiang surname: Pang fullname: Pang, Zhiqiang – sequence: 2 givenname: Jia surname: Chen fullname: Chen, Jia – sequence: 3 givenname: Tuhong surname: Wang fullname: Wang, Tuhong – sequence: 4 givenname: Chunsheng surname: Gao fullname: Gao, Chunsheng – sequence: 5 givenname: Zhimin surname: Li fullname: Li, Zhimin – sequence: 6 givenname: Litao surname: Guo fullname: Guo, Litao – sequence: 7 givenname: Jianping surname: Xu fullname: Xu, Jianping – sequence: 8 givenname: Yi surname: Cheng fullname: Cheng, Yi |
| BackLink | https://www.ncbi.nlm.nih.gov/pubmed/33737943$$D View this record in MEDLINE/PubMed |
| BookMark | eNp1Uk1vEzEQtVAR_aB3TmglLlwSbI_XXnNAqiIKlVKB-JC4WbZ3Njhs7LDeFPHv8ZJQtZXwZSzPmzfPM--UHMUUkZBnjM4BGv2q2_Z5zilnc8kZV_IROWFSipmQ_NvRnfsxOc95TcupKdVaPSHHAAqUFnBCFssQf4S4qj72No7VZ_Qptnb4XV3jaF3qw4i5srE95K-DH5ILaYP5dXVRfcKbgL-eksed7TOeH-IZ-Xr59svi_Wz54d3V4mI583Utx5mzjHdKcM8sOFdrJ7pWSy6htbTVbUNBt1ZR2zTWgULaoKNCoeToNfdCwBm52vO2ya7NdgibItQkG8zfhzSsjB3G4Hs0DijnXoJwgMILcFxZW_sSOTDmWOF6s-fa7twGW49xHGx_j_R-JobvZpVujNKS0aYpBC8PBEP6ucM8mk3IHvsyJky7bHhNQYCSYur14gF0nXZDLKMywFVZpWR1XVDP7yq6lfJvVwVA94CygpwH7G4hjJrJEWZyhJkcYfaOKCXyQYkPox1Dmv4U-v8X_gE_H7oM |
| CitedBy_id | crossref_primary_10_1093_pcp_pcad012 crossref_primary_10_3390_agronomy13112782 crossref_primary_10_3390_insects16020114 crossref_primary_10_1016_j_indcrop_2025_121116 crossref_primary_10_1016_j_scitotenv_2022_154302 crossref_primary_10_3390_plants13131746 crossref_primary_10_1016_j_watres_2024_122585 crossref_primary_10_1111_nph_19401 crossref_primary_10_1016_j_scitotenv_2024_174395 crossref_primary_10_1111_pce_70019 crossref_primary_10_1371_journal_pone_0313948 crossref_primary_10_1016_j_plaphy_2023_108070 crossref_primary_10_3389_fmicb_2024_1448301 crossref_primary_10_1007_s11104_023_06220_2 crossref_primary_10_1016_j_phyplu_2025_100754 crossref_primary_10_1128_msystems_00120_22 crossref_primary_10_1111_1758_2229_70150 crossref_primary_10_1371_journal_pone_0282316 crossref_primary_10_3389_fpls_2024_1363063 crossref_primary_10_3389_fpls_2025_1599450 crossref_primary_10_1016_j_soilbio_2024_109343 crossref_primary_10_1111_1462_2920_16382 crossref_primary_10_3390_plants13020319 crossref_primary_10_3389_fpls_2022_920813 crossref_primary_10_1128_spectrum_03831_22 crossref_primary_10_3390_horticulturae10101074 crossref_primary_10_3390_metabo11120879 crossref_primary_10_3389_fmicb_2023_1235708 crossref_primary_10_3390_microorganisms9122504 crossref_primary_10_3389_fmicb_2021_744094 crossref_primary_10_1016_j_bcab_2024_103445 crossref_primary_10_1016_j_foodchem_2023_136859 crossref_primary_10_3390_ijms26072878 crossref_primary_10_1016_j_indcrop_2025_121341 crossref_primary_10_1111_pce_15534 crossref_primary_10_3390_ijms25031652 crossref_primary_10_1128_aem_02287_23 crossref_primary_10_1371_journal_pone_0316676 crossref_primary_10_1007_s00344_024_11548_9 crossref_primary_10_1016_j_micres_2023_127527 crossref_primary_10_1186_s40168_024_01888_9 crossref_primary_10_1093_ismejo_wrae223 crossref_primary_10_3389_fpls_2022_1042375 crossref_primary_10_3390_ijms25020750 crossref_primary_10_3389_fmicb_2025_1524703 crossref_primary_10_3390_plants11141820 crossref_primary_10_1007_s00425_024_04459_2 crossref_primary_10_1038_s41598_024_83506_0 crossref_primary_10_3390_metabo13060759 crossref_primary_10_3390_molecules28010141 crossref_primary_10_1016_j_bej_2024_109345 crossref_primary_10_3390_cancers16213612 crossref_primary_10_1007_s11104_025_07594_1 crossref_primary_10_1155_ijm_1349429 crossref_primary_10_1016_j_foreco_2021_119857 crossref_primary_10_1155_ijm_4388417 crossref_primary_10_3390_plants12193479 crossref_primary_10_1016_j_jfp_2023_100103 crossref_primary_10_1093_bbb_zbac191 crossref_primary_10_3390_pr13010120 crossref_primary_10_1111_oik_09352 crossref_primary_10_1016_j_tim_2024_11_011 crossref_primary_10_3389_fpls_2022_921008 crossref_primary_10_3389_fpls_2023_1048762 crossref_primary_10_1016_j_envint_2024_109116 crossref_primary_10_1016_j_fochx_2025_102720 crossref_primary_10_1128_spectrum_02385_21 crossref_primary_10_3389_fpls_2022_827369 crossref_primary_10_1038_s41467_024_49643_w crossref_primary_10_1111_1462_2920_16015 crossref_primary_10_1111_pbi_14305 crossref_primary_10_3390_metabo14040231 crossref_primary_10_1016_j_bcab_2022_102572 crossref_primary_10_1016_j_ejbt_2025_07_005 crossref_primary_10_3389_fpls_2022_1032480 crossref_primary_10_3389_fmicb_2022_1073922 crossref_primary_10_7717_peerj_19124 crossref_primary_10_1016_j_sajb_2022_04_028 crossref_primary_10_1186_s40793_024_00628_8 crossref_primary_10_3390_plants10112245 crossref_primary_10_1007_s11274_025_04339_1 crossref_primary_10_3390_foods13020308 crossref_primary_10_3390_molecules27196392 crossref_primary_10_1038_s41598_024_61817_6 crossref_primary_10_1016_j_indcrop_2024_119227 crossref_primary_10_1007_s13199_023_00925_9 crossref_primary_10_1016_j_micpath_2025_107333 crossref_primary_10_1016_j_jfp_2023_100210 crossref_primary_10_54187_jnrs_1522818 crossref_primary_10_1007_s00425_024_04338_w crossref_primary_10_1073_pnas_2310134120 crossref_primary_10_3389_fmicb_2024_1477465 crossref_primary_10_1093_jambio_lxaf124 crossref_primary_10_3389_fmicb_2024_1374199 crossref_primary_10_1016_j_hsr_2023_100115 crossref_primary_10_1186_s40793_024_00618_w crossref_primary_10_3390_ijms23179877 crossref_primary_10_3389_fpls_2023_1271490 crossref_primary_10_1186_s12870_024_05952_2 crossref_primary_10_3390_metabo12010022 crossref_primary_10_1016_j_indcrop_2023_117617 crossref_primary_10_1128_spectrum_03076_23 crossref_primary_10_1007_s12374_022_09371_4 crossref_primary_10_1093_plphys_kiae605 crossref_primary_10_3390_molecules29153582 crossref_primary_10_1093_jambio_lxad178 crossref_primary_10_1177_1934578X251315026 crossref_primary_10_1186_s40168_022_01387_9 crossref_primary_10_3390_jof8111142 crossref_primary_10_1111_ppl_70397 crossref_primary_10_1038_s41598_023_45937_z crossref_primary_10_3389_fmicb_2024_1468627 crossref_primary_10_1111_1751_7915_14372 crossref_primary_10_3389_fchem_2024_1385844 crossref_primary_10_3389_fmicb_2023_1199907 crossref_primary_10_3389_fmicb_2023_1220431 crossref_primary_10_53365_nrfhh_206024 crossref_primary_10_1111_plb_13724 crossref_primary_10_3389_fpls_2024_1369754 crossref_primary_10_3389_fpls_2025_1578662 crossref_primary_10_3390_f13101702 crossref_primary_10_1016_j_arabjc_2023_104881 crossref_primary_10_1016_j_molp_2022_09_007 crossref_primary_10_3389_fpls_2025_1564704 crossref_primary_10_1016_j_phytochem_2024_114004 crossref_primary_10_1038_s41598_023_33676_0 crossref_primary_10_3389_fpls_2025_1620460 crossref_primary_10_1016_j_pbi_2022_102227 crossref_primary_10_1007_s00203_022_03321_x crossref_primary_10_3390_plants12152815 crossref_primary_10_1007_s42773_025_00434_6 crossref_primary_10_3389_ffunb_2023_1141963 crossref_primary_10_1016_j_fochx_2025_102773 crossref_primary_10_1186_s40538_023_00444_1 crossref_primary_10_1002_csc2_70145 crossref_primary_10_1093_treephys_tpad067 crossref_primary_10_5511_plantbiotechnology_25_0504a crossref_primary_10_1007_s00425_025_04748_4 crossref_primary_10_1134_S000368382303016X crossref_primary_10_1007_s42398_025_00357_9 crossref_primary_10_1111_jen_13342 crossref_primary_10_1016_j_scitotenv_2022_158697 crossref_primary_10_3390_microorganisms10061218 crossref_primary_10_3389_fpls_2024_1325048 crossref_primary_10_1007_s11030_025_11191_w crossref_primary_10_3390_molecules27185972 crossref_primary_10_3389_fpls_2022_936252 crossref_primary_10_1016_j_envpol_2022_119365 crossref_primary_10_1186_s13213_025_01802_0 crossref_primary_10_1002_ppp3_10404 crossref_primary_10_1093_jambio_lxad036 crossref_primary_10_3390_horticulturae7110451 crossref_primary_10_3390_plants12203519 crossref_primary_10_3390_su14148329 crossref_primary_10_1016_j_csbj_2023_01_032 crossref_primary_10_1016_j_copbio_2021_06_016 crossref_primary_10_1016_j_scitotenv_2024_170145 crossref_primary_10_1093_bbb_zbab106 crossref_primary_10_3389_fmicb_2024_1183024 crossref_primary_10_1080_15422119_2025_2493849 crossref_primary_10_1093_femsre_fuad007 crossref_primary_10_3390_microorganisms11040879 crossref_primary_10_1007_s00344_024_11237_7 crossref_primary_10_1007_s44372_025_00273_6 crossref_primary_10_3389_fpls_2024_1505199 crossref_primary_10_3389_fhort_2025_1656887 crossref_primary_10_7554_eLife_84988 crossref_primary_10_1038_s43016_022_00636_2 crossref_primary_10_1007_s10653_023_01823_1 crossref_primary_10_1016_j_chemosphere_2024_143397 crossref_primary_10_3390_pr12061208 crossref_primary_10_1111_1541_4337_13397 crossref_primary_10_17221_254_2023_PSE crossref_primary_10_1016_j_pedsph_2025_09_017 crossref_primary_10_1016_j_scitotenv_2022_157132 crossref_primary_10_1038_s42003_024_06907_x crossref_primary_10_3390_plants13030364 crossref_primary_10_1016_j_indcrop_2022_115944 crossref_primary_10_1016_j_sajb_2024_05_053 crossref_primary_10_1016_j_micres_2025_128314 crossref_primary_10_1007_s00374_024_01886_x crossref_primary_10_1093_plphys_kiaf349 crossref_primary_10_3389_fpls_2023_1219366 crossref_primary_10_3389_fpls_2022_1044896 crossref_primary_10_3389_fmicb_2021_775665 crossref_primary_10_1016_j_scitotenv_2024_175766 crossref_primary_10_1111_1462_2920_16308 crossref_primary_10_1128_spectrum_02800_22 crossref_primary_10_3390_agronomy15030706 crossref_primary_10_1016_j_jinsphys_2025_104856 crossref_primary_10_1007_s10526_023_10190_w crossref_primary_10_1007_s11104_025_07291_z crossref_primary_10_1007_s11104_024_07020_y crossref_primary_10_1186_s13213_022_01696_2 crossref_primary_10_1007_s11104_022_05369_6 crossref_primary_10_1016_j_micpath_2022_105805 crossref_primary_10_26538_tjnpr_v9i7_33 crossref_primary_10_3390_molecules29040860 crossref_primary_10_1016_j_postharvbio_2023_112298 crossref_primary_10_1021_acsbiomedchemau_5c00069 crossref_primary_10_1007_s12161_024_02673_y crossref_primary_10_3390_beverages10010001 crossref_primary_10_1007_s00248_023_02262_2 crossref_primary_10_1007_s11368_024_03922_7 crossref_primary_10_1016_j_scitotenv_2021_152498 crossref_primary_10_1111_pbi_13950 crossref_primary_10_1016_j_scitotenv_2023_168940 crossref_primary_10_1111_nph_19479 crossref_primary_10_3390_agronomy14040669 crossref_primary_10_3389_fmicb_2021_781316 crossref_primary_10_3389_fmicb_2022_1000033 crossref_primary_10_3389_fsufs_2023_1253735 crossref_primary_10_1111_nph_18709 crossref_primary_10_1007_s00253_022_12159_8 crossref_primary_10_3390_plants13202888 crossref_primary_10_3390_vetsci11080375 crossref_primary_10_1186_s12934_023_02234_8 crossref_primary_10_1186_s40168_024_01885_y crossref_primary_10_1093_jpe_rtaf069 crossref_primary_10_1016_j_scienta_2025_114290 crossref_primary_10_1186_s40168_023_01504_2 crossref_primary_10_3390_microorganisms10112193 crossref_primary_10_1038_s42003_024_06259_6 crossref_primary_10_3390_metabo13020140 crossref_primary_10_3389_fpls_2023_1272363 crossref_primary_10_1016_j_bcab_2025_103536 crossref_primary_10_1016_j_scienta_2022_111610 crossref_primary_10_3390_agronomy15071598 crossref_primary_10_3389_fmicb_2023_1128956 crossref_primary_10_1080_00224561_2025_2505386 crossref_primary_10_1016_j_rhisph_2025_101181 crossref_primary_10_3390_ijms25073926 crossref_primary_10_48130_abd_0025_0005 crossref_primary_10_1016_j_apsoil_2025_106119 crossref_primary_10_3390_f13081338 crossref_primary_10_3390_ijms26052277 crossref_primary_10_3389_fmicb_2022_954489 crossref_primary_10_1007_s42729_023_01272_w crossref_primary_10_1016_j_soilbio_2022_108753 crossref_primary_10_1111_1541_4337_13103 crossref_primary_10_1128_msystems_00707_25 crossref_primary_10_3390_microorganisms10091814 crossref_primary_10_1016_j_indcrop_2025_121726 crossref_primary_10_1021_acs_jafc_5c04824 crossref_primary_10_1007_s11816_023_00883_0 crossref_primary_10_1111_jam_15591 crossref_primary_10_1186_s12866_025_04089_y crossref_primary_10_1016_j_envexpbot_2023_105300 crossref_primary_10_3389_fpls_2022_908669 crossref_primary_10_1007_s00049_025_00419_8 crossref_primary_10_1007_s13199_025_01049_y crossref_primary_10_1080_15440478_2023_2198275 crossref_primary_10_3390_ijms232314787 crossref_primary_10_1016_j_scitotenv_2024_171278 crossref_primary_10_3389_fpls_2022_930340 crossref_primary_10_3389_fmicb_2022_992823 crossref_primary_10_3390_microorganisms13061337 crossref_primary_10_3389_fpls_2022_938865 crossref_primary_10_1007_s11104_022_05729_2 crossref_primary_10_1038_s41598_025_16496_2 crossref_primary_10_1007_s11104_024_06676_w crossref_primary_10_1080_11263504_2025_2541733 crossref_primary_10_1016_j_ygeno_2022_110471 crossref_primary_10_1016_j_ecoenv_2023_114624 crossref_primary_10_1080_07391102_2023_2209648 crossref_primary_10_1128_spectrum_01184_24 crossref_primary_10_1007_s00203_021_02644_5 crossref_primary_10_1111_nph_20206 crossref_primary_10_1111_raq_12778 crossref_primary_10_1007_s11274_025_04335_5 crossref_primary_10_1038_s41598_024_79192_7 crossref_primary_10_1111_ppl_14314 crossref_primary_10_1038_s41598_024_66161_3 crossref_primary_10_1016_j_molstruc_2024_140578 crossref_primary_10_1016_j_scitotenv_2023_165654 crossref_primary_10_2144_btn_2023_0083 crossref_primary_10_1007_s11240_025_03010_9 crossref_primary_10_1016_j_rhisph_2024_100920 crossref_primary_10_1099_mgen_0_001181 crossref_primary_10_1111_pce_15473 crossref_primary_10_1007_s11104_024_07102_x crossref_primary_10_1111_pce_15471 crossref_primary_10_1016_j_indcrop_2024_118779 crossref_primary_10_3390_plants11050613 crossref_primary_10_1007_s11101_022_09806_3 crossref_primary_10_1111_1365_2745_70064 crossref_primary_10_1111_brv_70003 crossref_primary_10_3389_fmicb_2022_899563 crossref_primary_10_1016_j_apsoil_2024_105564 crossref_primary_10_1002_jemt_24564 crossref_primary_10_3389_fpls_2025_1631066 crossref_primary_10_1016_j_plana_2025_100183 crossref_primary_10_1016_j_scienta_2022_111151 crossref_primary_10_3390_life14010159 crossref_primary_10_1038_s41467_024_52679_7 crossref_primary_10_1186_s40168_024_02000_x crossref_primary_10_1002_sae2_70044 crossref_primary_10_3389_fpls_2022_1005711 crossref_primary_10_1016_j_biocontrol_2023_105373 crossref_primary_10_1016_j_micres_2024_127798 crossref_primary_10_1016_j_micpath_2025_107587 crossref_primary_10_1111_ppl_14284 crossref_primary_10_1080_21645698_2025_2559489 crossref_primary_10_32604_biocell_2022_019291 crossref_primary_10_1016_j_apsoil_2023_105171 crossref_primary_10_14720_aas_2022_118_2_2416 crossref_primary_10_1007_s11051_025_06226_0 crossref_primary_10_1111_eea_13195 crossref_primary_10_3390_f16040574 crossref_primary_10_1186_s12866_024_03409_y crossref_primary_10_1016_j_jmgm_2025_109105 crossref_primary_10_1080_03235408_2024_2368112 crossref_primary_10_3390_jof10100679 crossref_primary_10_1016_j_rhisph_2022_100476 crossref_primary_10_1094_PHYTO_02_24_0054_KC crossref_primary_10_3389_fmicb_2023_1187982 crossref_primary_10_3390_agriculture15070768 crossref_primary_10_3389_fmicb_2024_1482952 crossref_primary_10_1016_j_scitotenv_2023_168627 crossref_primary_10_1038_s43705_023_00323_8 crossref_primary_10_3389_fpls_2022_936747 crossref_primary_10_3390_plants14142238 crossref_primary_10_3390_microorganisms12091780 crossref_primary_10_1016_j_teac_2021_e00130 crossref_primary_10_1016_j_indcrop_2021_114293 crossref_primary_10_1111_1462_2920_16231 crossref_primary_10_1093_ismejo_wrae144 crossref_primary_10_3390_microorganisms12020405 crossref_primary_10_1016_j_pbi_2024_102620 crossref_primary_10_1016_j_jplph_2023_154141 crossref_primary_10_3390_microorganisms9091901 crossref_primary_10_3389_fmicb_2023_1088532 crossref_primary_10_3390_plants13162309 crossref_primary_10_1007_s11104_025_07422_6 crossref_primary_10_1016_j_indcrop_2024_120129 crossref_primary_10_1002_cbdv_202301273 crossref_primary_10_1016_j_indcrop_2024_120248 crossref_primary_10_1002_sae2_12063 crossref_primary_10_1016_j_micres_2022_127097 crossref_primary_10_1016_j_micres_2025_128141 crossref_primary_10_1016_j_toxicon_2024_107812 crossref_primary_10_1038_s41564_024_01781_z crossref_primary_10_1016_j_rhisph_2022_100480 crossref_primary_10_1016_j_phytochem_2023_113963 crossref_primary_10_3389_fmicb_2025_1558567 crossref_primary_10_1139_cjfr_2024_0069 crossref_primary_10_3389_fsufs_2024_1354468 crossref_primary_10_1007_s10886_023_01452_z crossref_primary_10_1007_s12298_023_01365_x crossref_primary_10_1186_s43170_023_00167_1 crossref_primary_10_3390_life13091898 crossref_primary_10_3390_plants13172343 crossref_primary_10_1016_j_bcp_2023_115915 crossref_primary_10_1016_j_sajb_2023_05_049 crossref_primary_10_3390_plants12183240 crossref_primary_10_1016_j_indcrop_2021_114169 crossref_primary_10_3389_fmicb_2022_840078 crossref_primary_10_1186_s40168_023_01525_x crossref_primary_10_1111_ppl_14195 crossref_primary_10_3389_fpls_2023_1250020 crossref_primary_10_1016_j_biotechadv_2025_108520 crossref_primary_10_1017_S0007485322000359 crossref_primary_10_1128_aem_01003_22 crossref_primary_10_3390_ph17010067 crossref_primary_10_1002_pca_3448 crossref_primary_10_3390_microorganisms12081534 crossref_primary_10_1038_s41564_023_01379_x crossref_primary_10_3390_agronomy13051211 crossref_primary_10_1186_s40793_024_00653_7 crossref_primary_10_1007_s00425_024_04521_z crossref_primary_10_1016_j_rhisph_2022_100490 crossref_primary_10_1371_journal_pone_0277101 crossref_primary_10_1007_s41204_025_00444_6 crossref_primary_10_3389_fmicb_2024_1408622 crossref_primary_10_1016_j_micres_2024_127688 crossref_primary_10_1111_mpp_70144 crossref_primary_10_3389_fmicb_2022_955647 crossref_primary_10_3389_fpls_2021_774994 crossref_primary_10_3389_fpls_2022_1023696 crossref_primary_10_3390_ijms242316774 crossref_primary_10_1016_j_envexpbot_2023_105633 crossref_primary_10_3389_fpls_2022_1062107 crossref_primary_10_48130_mpb_0024_0011 |
| Cites_doi | 10.3390/jof6040312 10.1186/s12870-016-0767-7 10.1038/s41598-018-30150-0 10.1038/s41467-019-10927-1 10.1007/s13199-020-00690-z 10.1371/journal.pone.0146555 10.1016/j.cell.2018.09.055 10.1016/j.mib.2019.09.006 10.1128/mSystems.00645-19 10.1007/s10886-017-0898-9 10.1111/nph.15361 10.1038/nature21417 10.3389/fpls.2019.01741 10.3390/ijms19030672 10.1038/s41396-020-00759-z 10.1214/12-AOAS597 10.1007/978-3-030-19318-8_7 10.3389/fmicb.2019.00925 10.1007/978-94-017-9291-2_7 10.1111/mec.12421 10.1134/S1021443718020073 10.1111/1462-2920.13602 10.1016/j.phymed.2019.153081 10.1093/pcp/pcz076 10.1038/s41564-018-0129-3 10.1038/s41589-018-0019-2 10.1016/j.tplants.2016.01.005 10.1002/cbdv.201900299 10.1186/s12859-016-1344-7 10.1016/j.ymeth.2018.04.029 10.1016/j.tplants.2019.11.004 10.1007/s00425-007-0530-2 10.1186/s40659-019-0246-3 10.1016/j.jfma.2018.09.007 10.1093/aob/mct067 10.3390/molecules23040762 10.1111/pce.13708 10.1146/annurev-biochem-061516-044952 10.1038/s41598-019-47329-8 10.1126/science.aau6389 10.1016/j.cell.2020.01.013 10.1007/978-1-4939-7819-9_17 10.1016/j.tplants.2020.03.014 10.1007/978-3-319-90484-9_12 10.1371/journal.pbio.2003862 10.1104/pp.19.00535 10.3389/fevo.2019.00238 10.1371/journal.pcbi.1004226 10.1007/s00248-018-1214-0 10.1073/pnas.1722335115 10.1186/s40168-019-0677-7 10.1371/journal.pbio.2006352 10.1002/ps.5507 10.1371/journal.pone.0056457 10.1038/s41396-019-0375-2 10.1021/acs.analchem.9b02948 10.1016/j.tplants.2020.08.005 10.1016/j.semcancer.2020.02.007 10.1021/acs.analchem.9b00789 10.1104/pp.16.01302 10.1093/femsec/fiy118 10.1038/s41579-018-0116-y 10.1128/mSystems.00013-15 10.1016/j.apsoil.2014.06.011 10.1038/s41467-018-06429-1 10.1002/ps.5440 10.1007/978-1-4939-7819-9_19 10.1007/s10886-016-0787-7 10.1104/pp.15.01020 10.1016/j.plaphy.2018.07.016 10.1111/nph.13325 10.1128/mSystems.00127-16 10.1371/journal.pgen.1004283 10.1111/1758-2229.12816 10.1039/c7np00057j 10.1007/s42398-018-0011-5 10.3389/fpls.2017.02223 10.1128/mSystems.00579-19 10.1186/s40168-019-0775-6 10.1111/1365-2745.13441 10.1093/bioinformatics/btv349 10.1016/j.tplants.2019.12.013 10.1016/j.soilbio.2017.12.011 10.1038/s41590-018-0121-3 10.1016/j.mib.2019.09.013 10.1371/journal.pcbi.1002687 10.1186/s40168-016-0213-y 10.1186/s12859-016-1230-3 10.1073/pnas.1907500116 10.1016/j.micres.2019.126395 10.1186/2042-5783-1-4 10.1016/j.tplants.2018.09.006 10.1016/j.plaphy.2020.02.026 10.1038/s41522-020-0122-5 10.3389/fpls.2020.00408 10.1186/s13059-018-1450-0 10.1371/journal.pcbi.1002606 10.1186/s40168-019-0727-1 10.1016/j.tplants.2017.09.003 10.1016/j.chom.2020.03.004 10.1128/AEM.00305-19 10.1016/j.chom.2014.02.005 10.12688/f1000research.21796.1 10.1039/c8an01581c 10.1093/bioinformatics/btx754 10.1007/s11427-019-9521-2 10.3389/fpls.2019.01758 10.1038/s41575-019-0258-z 10.1073/pnas.1912130117 10.1007/s11427-019-9579-6 10.1111/nph.16223 10.1186/s40168-016-0220-z 10.1038/nrmicro.2016.15 10.3390/jof6040206 10.1111/tpj.13639 10.1038/s41587-019-0104-4 10.3389/fpls.2018.00114 10.1094/mpmi-20-12-1512 10.1007/978-3-319-90484-9_16 10.1038/s41396-017-0035-3 10.1073/pnas.1820691116 10.1016/j.mib.2017.03.009 10.1038/s41467-018-05122-7 10.1007/s13238-020-00724-8 10.1038/nplants.2015.51 10.3389/fmicb.2013.00400 10.1093/mp/sst080 10.1016/j.envpol.2019.113709 10.1371/journal.pcbi.1004075 10.1111/nph.15538 10.1016/j.jare.2019.03.004 10.1007/s00299-019-02447-5 10.1146/annurev-ecolsys-110617-062406 10.1186/s12859-019-2965-4 10.1016/bs.abr.2016.11.003 10.1093/bioinformatics/btaa188 10.1016/j.scitotenv.2019.05.220 10.1073/pnas.1805944115 10.1186/s40168-018-0605-2 10.1016/j.chom.2019.07.009 10.1038/s41598-017-17110-w 10.1073/pnas.1818604116 10.1016/j.tplants.2019.01.008 10.1186/s40168-018-0537-x 10.3389/fmicb.2019.02686 10.1016/j.tplants.2019.12.004 10.1093/nar/gkx295 10.1038/ismej.2015.235 10.1007/s00248-019-01376-w 10.1186/s12859-016-1037-2 10.1002/cem.2900 10.1007/s11104-012-1361-x 10.1016/j.chom.2015.01.001 10.1111/2041-210x.12399 10.1111/1462-2920.14683 10.1007/s00253-008-1760-3 10.3389/fpls.2019.01448 10.1038/s41564-019-0664-6 10.1016/j.mib.2019.10.010 10.1177/1099800420903083 10.1016/j.jare.2019.03.003 10.1093/aobpla/plaa002 10.1073/pnas.1116053109 10.1016/j.phytochem.2014.09.021 10.1126/science.aaz5192 10.1007/s11101-018-9591-z 10.5511/plantbiotechnology.14.0917a 10.1016/j.pbi.2020.02.005 10.1016/j.jare.2019.03.005 10.3389/fpls.2017.02124 10.1038/srep42335 10.1073/pnas.1523580113 10.4161/psb.4.8.9047 10.1016/j.chroma.2016.01.078 10.1016/j.indcrop.2018.06.033 10.1016/j.chom.2015.01.011 10.1111/1462-2920.14599 10.1105/tpc.19.00320 10.3389/fpls.2019.01313 10.1093/bioinformatics/btv401 10.1016/j.tplants.2020.09.008 10.1126/science.aaa8764 10.1186/s40694-019-0071-z 10.1186/s40168-017-0304-4 10.7717/peerj.2584 10.1111/nph.13423 10.1080/14786419.2019.1579810 10.1104/pp.111.180224 10.1016/j.molp.2019.05.006 10.3390/microorganisms8030355 10.1016/j.cell.2018.10.020 10.1016/j.plantsci.2019.05.016 10.1080/17429145.2019.1640294 10.1073/pnas.1618584114 10.1111/nph.14973 10.1371/journal.pbio.3000534 10.1021/acs.analchem.7b01381 10.1038/nbt.3703 10.1111/1365-2745.12626 10.1371/journal.pbio.2003962 10.1038/nmeth.f.303 10.1093/gigascience/giz083 10.1094/mpmi-10-17-0253-r 10.1126/science.aaw9285 10.1007/s00442-019-04435-8 10.1038/s41589-019-0287-5 10.1104/pp.108.130369 10.1038/s41592-019-0616-3 10.1016/j.tplants.2018.05.003 10.1126/science.1205438 10.1007/s00049-018-0252-x 10.1016/j.scitotenv.2019.07.354 10.1016/j.copbio.2013.09.012 10.1038/srep06727 10.1016/j.cell.2018.02.024 10.1098/rspb.2020.0403 10.1094/MPMI-01-15-0016-R 10.1111/1462-2920.12724 10.1094/mpmi-05-10-0115 10.1016/j.pbi.2020.01.005 10.1038/nmeth.2604 10.1016/j.tplants.2016.06.005 10.1016/j.cell.2020.02.016 10.1038/srep41766 10.1038/s41586-020-2778-7 10.1093/bioinformatics/btz824 10.1186/2049-2618-1-17 10.1016/j.scitotenv.2016.09.120 10.1073/pnas.1807275115 10.3389/fmicb.2020.566613) |
| ContentType | Journal Article |
| Copyright | Copyright © 2021 Pang, Chen, Wang, Gao, Li, Guo, Xu and Cheng. 2021. This work is licensed under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. Copyright © 2021 Pang, Chen, Wang, Gao, Li, Guo, Xu and Cheng. 2021 Pang, Chen, Wang, Gao, Li, Guo, Xu and Cheng |
| Copyright_xml | – notice: Copyright © 2021 Pang, Chen, Wang, Gao, Li, Guo, Xu and Cheng. – notice: 2021. This work is licensed under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. – notice: Copyright © 2021 Pang, Chen, Wang, Gao, Li, Guo, Xu and Cheng. 2021 Pang, Chen, Wang, Gao, Li, Guo, Xu and Cheng |
| DBID | AAYXX CITATION NPM 3V. 7X2 8FE 8FH 8FK ABUWG AEUYN AFKRA ATCPS AZQEC BBNVY BENPR BHPHI CCPQU DWQXO GNUQQ HCIFZ LK8 M0K M7P PHGZM PHGZT PIMPY PKEHL PQEST PQGLB PQQKQ PQUKI PRINS 7X8 5PM DOA |
| DOI | 10.3389/fpls.2021.621276 |
| DatabaseName | CrossRef PubMed ProQuest Central (Corporate) Agricultural Science Collection ProQuest SciTech Collection ProQuest Natural Science Collection ProQuest Central (Alumni) (purchase pre-March 2016) ProQuest Central (Alumni) ProQuest One Sustainability ProQuest Central UK/Ireland Agricultural & Environmental Science Collection ProQuest Central Essentials Biological Science Collection AUTh Library subscriptions: ProQuest Central Natural Science Collection ProQuest One Community College ProQuest Central Korea ProQuest Central Student SciTech Premium Collection ProQuest Biological Science Collection Agriculture Science Database Biological Science Database ProQuest Central Premium ProQuest One Academic Publicly Available Content Database ProQuest One Academic Middle East (New) ProQuest One Academic Eastern Edition (DO NOT USE) ProQuest One Applied & Life Sciences ProQuest One Academic (retired) ProQuest One Academic UKI Edition ProQuest Central China MEDLINE - Academic PubMed Central (Full Participant titles) DOAJ Open Access Full Text |
| DatabaseTitle | CrossRef PubMed Agricultural Science Database Publicly Available Content Database ProQuest Central Student ProQuest One Academic Middle East (New) ProQuest Central Essentials ProQuest Central (Alumni Edition) SciTech Premium Collection ProQuest One Community College ProQuest Natural Science Collection ProQuest Central China ProQuest Central ProQuest One Applied & Life Sciences ProQuest One Sustainability Natural Science Collection ProQuest Central Korea Agricultural & Environmental Science Collection Biological Science Collection ProQuest Central (New) ProQuest Biological Science Collection ProQuest One Academic Eastern Edition Agricultural Science Collection Biological Science Database ProQuest SciTech Collection ProQuest One Academic UKI Edition ProQuest One Academic ProQuest One Academic (New) ProQuest Central (Alumni) MEDLINE - Academic |
| DatabaseTitleList | MEDLINE - Academic Agricultural Science Database PubMed CrossRef |
| Database_xml | – sequence: 1 dbid: DOA name: DOAJ Open Access Full Text url: https://www.doaj.org/ sourceTypes: Open Website – sequence: 2 dbid: NPM name: PubMed url: http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed sourceTypes: Index Database – sequence: 3 dbid: PIMPY name: Publicly Available Content Database url: http://search.proquest.com/publiccontent sourceTypes: Aggregation Database |
| DeliveryMethod | fulltext_linktorsrc |
| Discipline | Botany |
| EISSN | 1664-462X |
| ExternalDocumentID | oai_doaj_org_article_b3022c634b3e4c43b27aa5c3b22311b1 PMC7961088 33737943 10_3389_fpls_2021_621276 |
| Genre | Journal Article Review |
| GrantInformation_xml | – fundername: Chinese Academy of Agricultural Sciences – fundername: Natural Sciences and Engineering Research Council of Canada |
| GroupedDBID | 5VS 9T4 AAFWJ AAKDD AAYXX ACGFO ACGFS ADBBV ADRAZ AENEX AFPKN ALMA_UNASSIGNED_HOLDINGS AOIJS BCNDV CITATION EBD ECGQY GROUPED_DOAJ GX1 HYE KQ8 M48 M~E OK1 PGMZT RNS RPM ACXDI IPNFZ NPM RIG 3V. 7X2 8FE 8FH 8FK ABUWG AEUYN AFKRA ATCPS AZQEC BBNVY BENPR BHPHI CCPQU DWQXO GNUQQ HCIFZ LK8 M0K M7P PHGZM PHGZT PIMPY PKEHL PQEST PQGLB PQQKQ PQUKI PRINS 7X8 5PM |
| ID | FETCH-LOGICAL-c556t-ba12f742c1a3bb59b4fd96263da0d9d8039da70a88ab37e08eb047e62ec92c443 |
| IEDL.DBID | DOA |
| ISICitedReferencesCount | 443 |
| ISICitedReferencesURI | http://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=Summon&SrcAuth=ProQuest&DestLinkType=CitingArticles&DestApp=WOS_CPL&KeyUT=000629148500001&url=https%3A%2F%2Fcvtisr.summon.serialssolutions.com%2F%23%21%2Fsearch%3Fho%3Df%26include.ft.matches%3Dt%26l%3Dnull%26q%3D |
| ISSN | 1664-462X |
| IngestDate | Fri Oct 03 12:45:34 EDT 2025 Thu Aug 21 18:28:41 EDT 2025 Wed Oct 01 14:00:00 EDT 2025 Fri Nov 21 21:43:48 EST 2025 Thu Apr 03 07:05:39 EDT 2025 Sat Nov 29 05:33:32 EST 2025 Tue Nov 18 20:41:42 EST 2025 |
| IsDoiOpenAccess | true |
| IsOpenAccess | true |
| IsPeerReviewed | true |
| IsScholarly | true |
| Keywords | VOCs pathogens rhizobia SynCom root exudates multi-omics endophytes phytohormones |
| Language | English |
| License | Copyright © 2021 Pang, Chen, Wang, Gao, Li, Guo, Xu and Cheng. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
| LinkModel | DirectLink |
| MergedId | FETCHMERGED-LOGICAL-c556t-ba12f742c1a3bb59b4fd96263da0d9d8039da70a88ab37e08eb047e62ec92c443 |
| Notes | ObjectType-Article-1 SourceType-Scholarly Journals-1 ObjectType-Feature-2 content type line 14 ObjectType-Review-3 content type line 23 Edited by: Roberta Marra, University of Naples Federico II, Italy This article was submitted to Plant Pathogen Interactions, a section of the journal Frontiers in Plant Science Reviewed by: Emilio Guerrieri, Istituto per la Protezione Sostenibile delle Piante (CNR), Italy; Anwar Hussain, Abdul Wali Khan University Mardan, Pakistan |
| OpenAccessLink | https://doaj.org/article/b3022c634b3e4c43b27aa5c3b22311b1 |
| PMID | 33737943 |
| PQID | 3273896155 |
| PQPubID | 7426805 |
| ParticipantIDs | doaj_primary_oai_doaj_org_article_b3022c634b3e4c43b27aa5c3b22311b1 pubmedcentral_primary_oai_pubmedcentral_nih_gov_7961088 proquest_miscellaneous_2503437641 proquest_journals_3273896155 pubmed_primary_33737943 crossref_primary_10_3389_fpls_2021_621276 crossref_citationtrail_10_3389_fpls_2021_621276 |
| PublicationCentury | 2000 |
| PublicationDate | 2021-03-02 |
| PublicationDateYYYYMMDD | 2021-03-02 |
| PublicationDate_xml | – month: 03 year: 2021 text: 2021-03-02 day: 02 |
| PublicationDecade | 2020 |
| PublicationPlace | Switzerland |
| PublicationPlace_xml | – name: Switzerland – name: Lausanne |
| PublicationTitle | Frontiers in plant science |
| PublicationTitleAlternate | Front Plant Sci |
| PublicationYear | 2021 |
| Publisher | Frontiers Media SA Frontiers Media S.A |
| Publisher_xml | – name: Frontiers Media SA – name: Frontiers Media S.A |
| References | Huang (B84) 2018; 23 Noirot-Gros (B158) 2020; 11 Bakker (B5) 2018; 172 Kozuka (B106) 2020; 182 Herrera Paredes (B79) 2018; 16 Carvalhais (B24) 2017; 37 Górniak (B71) 2019; 18 Iannucci (B86) 2017; 8 Xu (B215) 2018; 115 Okutani (B159) 2020; 43 Masuda (B139) 2018 Lundberg (B125) 2018; 115 Tian (B196) 2020; 12 Lamichhane (B109) 2018; 149 Pangesti (B162) 2016; 42 McGregor (B140) 2020; 36 van der Kloet (B201) 2016; 17 Nilsson (B155) 2019; 17 Kong (B99) 2018; 9 Helletsgruber (B78) 2017; 43 Etalo (B53) Zhang (B224) 2007; 226 You (B218) 2020; 233 Doornbos (B43) 2011; 24 Chen (B27) 2020; 6 Ilhan (B87) 2020; 6 Zhou (B231) 2019; 10 Lavelle (B111) 2020; 17 Lenzewski (B113) 2018; 218 Gargallo-Garriga (B67) 2018; 8 Ray (B172) 2019 Taghinasab (B194) 2020; 8 Kang (B94) 2019; 14 Liu (B116) 2019; 24 Faust (B60) 2012; 8 Venturi (B204) 2016; 21 Bulgarelli (B16) 2015; 17 Maggini (B129) 2017; 7 Masteling (B138) 2019; 49 Ni (B154) 2020; 36 Farré-Armengol (B59) 2016; 21 Ray (B173) 2019; 10 Zhang (B226) 2020; 6 Liu (B117) 2020; 25 Millet (B146) 2019; 6 Bont (B12) 2020; 108 Bennett (B7) 2020; 25 Wang (B210) 2020; 27 Chen (B29) 2019; 118 Kurtz (B108) 2015; 11 Garcia-Lemos (B66) 2020; 11 Carvalhais (B23) 2014; 84 Dudenhöffer (B46) 2016; 104 Raza (B174) 2020; 287 Lu (B123) 2017; 86 Duan (B44) 2015 Bakker (B4) 2018; 19 Trda (B199) 2019; 10 Davis (B40) 2018; 6 Ahmad (B1) 2011; 157 Kamutando (B93) 2019; 77 Huang (B83) 2019; 364 Ullrich (B200) 2019; 64 Edwards (B51) 2018; 16 Melnik (B144) 2017; 89 Morton (B148) 2019; 16 Nasir (B151) 2019; 286 Haney (B75) 2015; 1 Pagnani (B161) 2018; 123 Bakker (B3) 2012; 360 Guerrieri (B73) 2019; 75 Holmer (B81) 2017 Voges (B207) 2019; 116 Wasternack (B211) 2013; 111 Tian (B197) 2014; 108 Boachon (B9); 31 Chen (B32) 2013; 6 Sugiyama (B192) 2014; 31 Pascale (B163) 2020; 10 Kessler (B95) 2018; 49 Cotton (B39) 2019; 13 Lucaciu (B124) 2019; 10 Youens-Clark (B219) 2019; 8 McHardy (B141) 2013; 1 Verbeek (B205) 2019; 190 Peñuelas (B165) 2014; 4 Caporaso (B19) 2010; 7 Furtado (B64) 2019; 85 Liu (B118) 2017; 7 Huang (B85) 2017; 7 Lock (B121) 2013; 7 Smilde (B185) 2017; 31 Rajniak (B171) 2018; 14 Jacoby (B89) 2020; 9 White (B213) 2017; 19 Zhang (B223) 2018; 118 Dubey (B45) 2020; 150 Edgar (B49) 2013; 10 Sasse (B178) 2018; 23 Buza (B18) 2019; 20 Sugiyama (B191) 2019; 19 Köberl (B97) 2013; 4 Perez-Jaramillo (B166) 2019; 7 Zhou (B230) 2020; 55 Varoquaux (B203) 2019 Korenblum (B102) 2019; 75 Nemet (B153) 2020; 180 Stassen (B187) 2020; 26 Stefanowicz (B188) 2017; 574 Tidke (B198) 2019 Lovell (B122) 2015; 11 Castrillo (B25) 2017; 543 Maggini (B130) 2020; 25 Stringlis (B189) 2019; 60 Finkel (B62) 2019; 17 Reshef (B175) 2011; 334 Ortíz-Castro (B160) 2009; 4 Rodriguez (B176) 2019; 12 Gevers (B70) 2014; 15 Shtark (B184) 2018; 65 Petriacq (B168) 2017; 92 Nasir (B150) 2020; 25 Contreras-Cornejo (B38) 2009; 149 Hill (B80) 2017; 5 Peter (B167) 2019 McIver (B142) 2018; 34 Naylor (B152) 2017; 8 Zhou (B229) 2020; 180 Friedman (B63) 2012; 8 Carvalhais (B22) 2013; 8 Carrion (B20) 2019; 366 Li (B114) 2016; 113 Nascimento (B149) 2018; 9 Hartman (B77) 2017; 5 Isah (B88) 2019; 52 Schlechter (B181) 2019; 19 Kostic (B105) 2015; 17 Boughton (B13) 2018 Koprivova (B101) 2019; 116 Zhang (B225) 2019; 37 Schulz-Bohm (B182) 2018; 12 Pini (B170) 2017; 174 Schütz (B183) 2019; 7 Dhariwal (B42) 2017; 45 Schenkel (B180) 2019 Wang (B208) 2019 Weiss (B212) 2016; 10 Noecker (B156) 2019; 4 Edgar (B50) 2015; 31 Lebeis (B112) 2015; 349 Mao (B134) 2016; 18 Kosmacz (B104) 2020; 55 Vives-Peris (B206) 2020; 39 Korenblum (B103) 2020; 117 Maggini (B127); 34 de Vries (B41) 2020; 368 Koh (B98) 2018; 175 Chen (B30) 2019; 62 Yang (B216) 2018; 23 Hansen (B76) 2014; 23 Chen (B31) 2020; 258 Gargallo-Garriga (B68) 2016; 16 Schandry (B179) 2020; 25 Greenblum (B72) 2012; 109 Fang (B58) 2015; 31 Fabiańska (B55) 2019; 221 Burdon (B17) 2018; 28 Zheng (B228) 2018; 19 Sokol (B186) 2019; 221 Kniskern (B96) 2007; 20 Mehmood (B143) 2020; 12 Geier (B69) 2020; 5 Bhattacharjee (B8) 2020; 5 Larsen (B110) 2011; 1 Chen (B34) 2020; 8 Broekgaarden (B15) 2015; 169 Duncan (B47) 2019; 144 Noecker (B157) 2016; 1 Boachon (B10); 15 Wang (B209) 2019; 62 Chen (B28) 2019; 683 Durán (B48) 2018; 175 Magnúsdóttir (B132) 2017; 35 Pei (B164) 2020; 12 Etalo (B54); 35 Piasecka (B169) 2015; 206 Jacoby (B90) 2018; 31 Hu (B82) 2018; 9 Compant (B37) 2019; 19 Zhalnina (B221) 2018; 3 Mallick (B133) 2019; 10 Szoboszlay (B193) 2016; 11 Stringlis (B190) 2018; 115 Maggini (B131) 2018; 94 Cheng (B35) 2019; 26 Comeau (B36) 2017; 2 Amicucci (B2) 2019; 91 Yang (B217) 2019; 693 Tahir (B195) 2019 Brader (B14) 2014; 27 Escudero-Martinez (B52) 2019; 49 Battin (B6) 2016; 14 Misra (B147) 2020; 22 Jha (B91) 2018; 1 Zhan (B222) 2019; 16 Liang (B115) 2019; 91 Mendes-Soares (B145) 2016; 17 Chen (B33) 2020; 10 Liu (B119) 2019; 49 Zhang (B227) 2017; 5 Luo (B126) 2016; 1437 Gweon (B74) 2015; 6 Williams (B214) 2020; 225 Zhou (B232) 2018; 130 Garcia (B65) 2015; 208 Kong (B100) 2020; 15 Maggini (B128); 9 Chen (B26) 2018; 19 Fang (B57) 2019; 24 Rognes (B177) 2016; 4 Yuan (B220) 2018; 6 Bodenhausen (B11) 2014; 10 Liu (B120) 2020 Van Deynze (B202) 2018; 16 Fakhri (B56) 2020 Massalha (B136) 2017; 114 Mariano (B135) 2016; 17 Mastan (B137) 2019; 78 Carvalhais (B21) 2015; 28 Kai (B92) 2009; 81 Finkel (B61) 2020; 587 Kudjordjie (B107) 2019; 7 |
| References_xml | – volume: 6 year: 2020 ident: B27 article-title: Sphinganine-analog mycotoxins (SAMs): chemical structures, bioactivities, and genetic controls. publication-title: J. Fungi. doi: 10.3390/jof6040312 – volume: 16 year: 2016 ident: B68 article-title: Shifts in plant foliar and floral metabolomes in response to the suppression of the associated microbiota. publication-title: BMC Plant Biol. doi: 10.1186/s12870-016-0767-7 – volume: 8 year: 2018 ident: B67 article-title: Root exudate metabolomes change under drought and show limited capacity for recovery. publication-title: Sci. Rep. doi: 10.1038/s41598-018-30150-0 – volume: 10 year: 2019 ident: B133 article-title: Predictive metabolomic profiling of microbial communities using amplicon or metagenomic sequences. publication-title: Nat. Commun. doi: 10.1038/s41467-019-10927-1 – volume: 12 start-page: 149 year: 2020 ident: B143 article-title: Yucasin and cinnamic acid inhibit iaa and flavonoids biosynthesis minimizing interaction between maize and endophyteaspergillus nomius. publication-title: Symbiosis doi: 10.1007/s13199-020-00690-z – volume: 11 year: 2016 ident: B193 article-title: The effect of root exudate 7,4’-dihydroxyflavone and naringenin on soil bacterial community structure. publication-title: PLoS One doi: 10.1371/journal.pone.0146555 – volume: 175 start-page: 947.e17 year: 2018 ident: B98 article-title: Microbially produced imidazole propionate impairs insulin signaling through mtorc1. publication-title: Cell doi: 10.1016/j.cell.2018.09.055 – volume: 49 start-page: 26 year: 2019 ident: B138 article-title: Harnessing the microbiome to control plant parasitic weeds. publication-title: Curr. Opin. Microbiol. doi: 10.1016/j.mib.2019.09.006 – volume: 5 year: 2020 ident: B8 article-title: Visualizing microbial community dynamics via a controllable soil environment. publication-title: Msystems doi: 10.1128/mSystems.00645-19 – volume: 43 start-page: 1073 year: 2017 ident: B78 article-title: Epiphytic bacteria alter floral scent emissions. publication-title: J. Chem. Ecol. doi: 10.1007/s10886-017-0898-9 – volume: 221 start-page: 233 year: 2019 ident: B186 article-title: Evidence for the primacy of living root inputs, not root or shoot litter, in forming soil organic carbon. publication-title: New Phytol. doi: 10.1111/nph.15361 – volume: 543 start-page: 513 year: 2017 ident: B25 article-title: Root microbiota drive direct integration of phosphate stress and immunity. publication-title: Nature doi: 10.1038/nature21417 – volume: 10 year: 2020 ident: B163 article-title: Modulation of the root microbiome by plant molecules: the basis for targeted disease suppression and plant growth promotion. publication-title: Front. Plant Sci. doi: 10.3389/fpls.2019.01741 – volume: 19 year: 2018 ident: B26 article-title: Core microbiome of medicinal plant salvia miltiorrhiza seed: a rich reservoir of beneficial microbes for secondary metabolism? publication-title: Int. J. Mol. Sci. doi: 10.3390/ijms19030672 – volume: 15 start-page: 397 year: 2020 ident: B100 article-title: Achieving similar root microbiota composition in neighbouring plants through airborne signalling. publication-title: ISME J. doi: 10.1038/s41396-020-00759-z – volume: 7 start-page: 523 year: 2013 ident: B121 article-title: Joint and individual variation explained (jive) for integrated analysis of multiple data types. publication-title: Ann. Appl. Stat. doi: 10.1214/12-AOAS597 – year: 2019 ident: B195 article-title: Metabolomic approaches in plant research publication-title: Essentials of Bioinformatics, Volume III: In Silico Life Sciences: Agriculture doi: 10.1007/978-3-030-19318-8_7 – volume: 10 year: 2019 ident: B173 article-title: Endophytic consortium with diverse gene-regulating capabilities of benzylisoquinoline alkaloids biosynthetic pathway can enhance endogenous morphine biosynthesis in papaver somniferum. publication-title: Front. Microbiol. doi: 10.3389/fmicb.2019.00925 – year: 2015 ident: B44 article-title: Metabolite qualitative methods and the introduction of metabolomics database publication-title: Plant metabolomics: Methods and applications doi: 10.1007/978-94-017-9291-2_7 – volume: 23 start-page: 1473 year: 2014 ident: B76 article-title: The impact of microbial symbionts on host plant utilization by herbivorous insects. publication-title: Mol. Ecol. doi: 10.1111/mec.12421 – volume: 65 start-page: 151 year: 2018 ident: B184 article-title: Strigolactones as regulators of symbiotrophy of plants and microorganisms. publication-title: Russ. J. Plant Physiol. doi: 10.1134/S1021443718020073 – volume: 19 start-page: 1391 year: 2017 ident: B213 article-title: Root isoflavonoids and hairy root transformation influence key bacterial taxa in the soybean rhizosphere. publication-title: Environ. Microbiol. doi: 10.1111/1462-2920.13602 – volume: 64 year: 2019 ident: B200 article-title: Comparison between tumors in plants and human beings: mechanisms of tumor development and therapy with secondary plant metabolites. publication-title: Phytomedicine doi: 10.1016/j.phymed.2019.153081 – volume: 60 start-page: 1405 year: 2019 ident: B189 article-title: The age of coumarins in plant-microbe interactions. publication-title: Plant Cell Physiol. doi: 10.1093/pcp/pcz076 – volume: 3 start-page: 470 year: 2018 ident: B221 article-title: Dynamic root exudate chemistry and microbial substrate preferences drive patterns in rhizosphere microbial community assembly. publication-title: Nat. Microbiol. doi: 10.1038/s41564-018-0129-3 – volume: 14 start-page: 442 year: 2018 ident: B171 article-title: Biosynthesis of redox-active metabolites in response to iron deficiency in plants. publication-title: Nat. Chem. Biol. doi: 10.1038/s41589-018-0019-2 – volume: 21 start-page: 187 year: 2016 ident: B204 article-title: Signaling in the rhizosphere. publication-title: Trends Plant Sci. doi: 10.1016/j.tplants.2016.01.005 – volume: 16 year: 2019 ident: B222 article-title: Biotransformation of huperzine b by a fungal endophyte of huperzia serrata. publication-title: Chem. Biodivers. doi: 10.1002/cbdv.201900299 – volume: 17 year: 2016 ident: B135 article-title: Simba: a web tool for managing bacterial genome assembly generated by ion pgm sequencing technology. publication-title: BMC Bioinformatics doi: 10.1186/s12859-016-1344-7 – volume: 149 start-page: 3 year: 2018 ident: B109 article-title: Gut metabolome meets microbiome: a methodological perspective to understand the relationship between host and microbe. publication-title: Methods doi: 10.1016/j.ymeth.2018.04.029 – volume: 25 start-page: 176 year: 2020 ident: B179 article-title: Allelopathic plants: models for studying plant–interkingdom interactions. publication-title: Trends Plant Sci. doi: 10.1016/j.tplants.2019.11.004 – volume: 226 start-page: 839 year: 2007 ident: B224 article-title: Rhizobacterial volatile emissions regulate auxin homeostasis and cell expansion in Arabidopsis. publication-title: Planta doi: 10.1007/s00425-007-0530-2 – volume: 52 year: 2019 ident: B88 article-title: Stress and defense responses in plant secondary metabolites production. publication-title: Biol. Res. doi: 10.1186/s40659-019-0246-3 – volume: 118 start-page: S10 year: 2019 ident: B29 article-title: Metabolome analysis for investigating host-gut microbiota interactions. publication-title: J. Formos. Med. Assoc. doi: 10.1016/j.jfma.2018.09.007 – volume: 111 start-page: 1021 year: 2013 ident: B211 article-title: Jasmonates: biosynthesis, perception, signal transduction and action in plant stress response, growth and development. An update to the 2007 review in annals of botany. publication-title: Ann. Bot. doi: 10.1093/aob/mct067 – volume: 23 year: 2018 ident: B216 article-title: Response of plant secondary metabolites to environmental factors. publication-title: Molecules doi: 10.3390/molecules23040762 – volume: 43 start-page: 1036 year: 2020 ident: B159 article-title: Rhizosphere modelling reveals spatiotemporal distribution of daidzein shaping soybean rhizosphere bacterial community. publication-title: Plant Cell Environ. doi: 10.1111/pce.13708 – volume: 86 start-page: 277 year: 2017 ident: B123 article-title: Metabolite measurement: pitfalls to avoid and practices to follow. publication-title: Annu. Rev. Biochem. doi: 10.1146/annurev-biochem-061516-044952 – volume: 9 ident: B128 article-title: The influence of echinacea purpurea leaf microbiota on chicoric acid level. publication-title: Sci. Rep. doi: 10.1038/s41598-019-47329-8 – volume: 364 year: 2019 ident: B83 article-title: A specialized metabolic network selectively modulates Arabidopsis root microbiota. publication-title: Science doi: 10.1126/science.aau6389 – volume: 180 start-page: 440.e18 year: 2020 ident: B229 article-title: Co-incidence of damage and microbial patterns controls localized immune responses in roots. publication-title: Cell doi: 10.1016/j.cell.2020.01.013 – year: 2018 ident: B13 article-title: Mass spectrometry imaging (msi) for plant metabolomics publication-title: Plant Metabolomics: Methods and Protocols doi: 10.1007/978-1-4939-7819-9_17 – volume: 25 start-page: 733 year: 2020 ident: B117 article-title: Microbiome-mediated stress resistance in plants. publication-title: Trends Plant Sci. doi: 10.1016/j.tplants.2020.03.014 – year: 2019 ident: B198 article-title: Current understanding and future perspectives of endophytic microbes vis-a-vis production of secondary metabolites publication-title: Endophytes and Secondary Metabolites doi: 10.1007/978-3-319-90484-9_12 – volume: 16 year: 2018 ident: B51 article-title: Compositional shifts in root-associated bacterial and archaeal microbiota track the plant life cycle in field-grown rice. publication-title: PLoS Biol. doi: 10.1371/journal.pbio.2003862 – volume: 182 start-page: 1114 year: 2020 ident: B106 article-title: Regulation of sugar and storage oil metabolism by phytochrome during de-etiolation. publication-title: Plant Physiol. doi: 10.1104/pp.19.00535 – volume: 7 year: 2019 ident: B183 article-title: Conversions of benzoxazinoids and downstream metabolites by soil microorganisms. publication-title: Front. Ecol. Evol. doi: 10.3389/fevo.2019.00238 – volume: 11 year: 2015 ident: B108 article-title: Sparse and compositionally robust inference of microbial ecological networks. publication-title: PLoS Comput. Biol. doi: 10.1371/journal.pcbi.1004226 – volume: 77 start-page: 191 year: 2019 ident: B93 article-title: The functional potential of the rhizospheric microbiome of an invasive tree species, acacia dealbata. publication-title: Microb. Ecol. doi: 10.1007/s00248-018-1214-0 – volume: 115 start-page: E5213 year: 2018 ident: B190 article-title: Myb72-dependent coumarin exudation shapes root microbiome assembly to promote plant health. publication-title: Proc. Natl. Acad. Sci. U.S.A. doi: 10.1073/pnas.1722335115 – volume: 7 year: 2019 ident: B107 article-title: Maize synthesized benzoxazinoids affect the host associated microbiome. publication-title: Microbiome doi: 10.1186/s40168-019-0677-7 – volume: 16 year: 2018 ident: B202 article-title: Nitrogen fixation in a landrace of maize is supported by a mucilage-associated diazotrophic microbiota. publication-title: PLoS Biol. doi: 10.1371/journal.pbio.2006352 – volume: 75 start-page: 2455 year: 2019 ident: B73 article-title: Role and exploitation of underground chemical signaling in plants. publication-title: Pest Manag. Sci. doi: 10.1002/ps.5507 – volume: 8 year: 2013 ident: B22 article-title: Activation of the jasmonic acid plant defence pathway alters the composition of rhizosphere bacterial communities. publication-title: PLoS One doi: 10.1371/journal.pone.0056457 – volume: 13 start-page: 1647 year: 2019 ident: B39 article-title: Metabolic regulation of the maize rhizobiome by benzoxazinoids. publication-title: ISME J. doi: 10.1038/s41396-019-0375-2 – volume: 91 start-page: 14424 year: 2019 ident: B115 article-title: Strategy for intercorrelation identification between metabolome and microbiome. publication-title: Anal. Chem. doi: 10.1021/acs.analchem.9b02948 – volume: 25 start-page: 1184 year: 2020 ident: B150 article-title: Does karrikin signaling shape the rhizomicrobiome via the strigolactone biosynthetic pathway? publication-title: Trends Plant Sci. doi: 10.1016/j.tplants.2020.08.005 – year: 2020 ident: B56 article-title: Modulation of dysregulated cancer metabolism by plant secondary metabolites: a mechanistic review. publication-title: Semin. Cancer Biol. doi: 10.1016/j.semcancer.2020.02.007 – volume: 91 start-page: 7254 year: 2019 ident: B2 article-title: Strategy for structural elucidation of polysaccharides: elucidation of a maize mucilage that harbors diazotrophic bacteria. publication-title: Anal. Chem. doi: 10.1021/acs.analchem.9b00789 – volume: 174 start-page: 1289 year: 2017 ident: B170 article-title: Bacterial biosensors for in vivo spatiotemporal mapping of root secretion. publication-title: Plant Physiol. doi: 10.1104/pp.16.01302 – volume: 94 start-page: 1 year: 2018 ident: B131 article-title: Antagonism and antibiotic resistance drive a species-specific plant microbiota differentiation in echinacea spp. publication-title: FEMS Microbiol. Ecol. doi: 10.1093/femsec/fiy118 – volume: 17 start-page: 95 year: 2019 ident: B155 article-title: Mycobiome diversity: high-throughput sequencing and identification of fungi. publication-title: Nat. Rev. Microbiol. doi: 10.1038/s41579-018-0116-y – volume: 1 year: 2016 ident: B157 article-title: Metabolic model-based integration of microbiome taxonomic and metabolomic profiles elucidates mechanistic links between ecological and metabolic variation. publication-title: mSystems doi: 10.1128/mSystems.00013-15 – volume: 84 start-page: 1 year: 2014 ident: B23 article-title: Plant defence inducers rapidly influence the diversity of bacterial communities in a potting mix. publication-title: Appl. Soil Ecol. doi: 10.1016/j.apsoil.2014.06.011 – volume: 9 year: 2018 ident: B99 article-title: Plant neighbor detection and allelochemical response are driven by root-secreted signaling chemicals. publication-title: Nat. Commun. doi: 10.1038/s41467-018-06429-1 – volume: 75 start-page: 2378 year: 2019 ident: B102 article-title: Phytobiome metabolism: beneficial soil microbes steer crop plants’ secondary metabolism. publication-title: Pest. Manag. Sci. doi: 10.1002/ps.5440 – year: 2018 ident: B139 article-title: Live single-cell mass spectrometry (lsc-ms) for plant metabolomics publication-title: Plant Metabolomics: Methods and Protocols doi: 10.1007/978-1-4939-7819-9_19 – volume: 42 start-page: 1212 year: 2016 ident: B162 article-title: Jasmonic acid and ethylene signaling pathways regulate glucosinolate levels in plants during rhizobacteria-induced systemic resistance against a leaf-chewing herbivore. publication-title: J. Chem. Ecol. doi: 10.1007/s10886-016-0787-7 – volume: 169 start-page: 2371 year: 2015 ident: B15 article-title: Ethylene: traffic controller on hormonal crossroads to defense. publication-title: Plant Physiol. doi: 10.1104/pp.15.01020 – volume: 130 start-page: 473 year: 2018 ident: B232 article-title: Endophytic Pseudomonas induces metabolic flux changes that enhance medicinal sesquiterpenoid accumulation in atractylodes lancea. publication-title: Plant Physiol. Biochem. doi: 10.1016/j.plaphy.2018.07.016 – volume: 206 start-page: 948 year: 2015 ident: B169 article-title: Secondary metabolites in plant innate immunity: conserved function of divergent chemicals. publication-title: New Phytol. doi: 10.1111/nph.13325 – volume: 2 year: 2017 ident: B36 article-title: Microbiome helper: a custom and streamlined workflow for microbiome research. publication-title: mSystems doi: 10.1128/mSystems.00127-16 – volume: 10 year: 2014 ident: B11 article-title: A synthetic community approach reveals plant genotypes affecting the phyllosphere microbiota. publication-title: PLoS Genet. doi: 10.1371/journal.pgen.1004283 – volume: 12 start-page: 160 year: 2020 ident: B196 article-title: The role of rhizodeposits in shaping rhizomicrobiome. publication-title: Environ. Microbiol. Rep. doi: 10.1111/1758-2229.12816 – volume: 35 start-page: 398 ident: B54 article-title: Modulation of plant chemistry by beneficial root microbiota. publication-title: Nat. Prod. Rep. doi: 10.1039/c7np00057j – volume: 1 start-page: 25 year: 2018 ident: B91 article-title: Mechanistic insights on plant root colonization by bacterial endophytes: a symbiotic relationship for sustainable agriculture. publication-title: Environ. Sustain. doi: 10.1007/s42398-018-0011-5 – volume: 8 year: 2017 ident: B152 article-title: Drought stress and root-associated bacterial communities. publication-title: Front. Plant Sci. doi: 10.3389/fpls.2017.02223 – volume: 4 year: 2019 ident: B156 article-title: Defining and evaluating microbial contributions to metabolite variation in microbiome-metabolome association studies. publication-title: mSystems doi: 10.1128/mSystems.00579-19 – volume: 8 year: 2020 ident: B34 article-title: Root ethylene mediates rhizosphere microbial community reconstruction when chemically detecting cyanide produced by neighbouring plants. publication-title: Microbiome doi: 10.1186/s40168-019-0775-6 – volume: 108 start-page: 2611 year: 2020 ident: B12 article-title: Heritable variation in root secondary metabolites is associated with recent climate. publication-title: J. Ecol. doi: 10.1111/1365-2745.13441 – volume: 31 start-page: 3172 year: 2015 ident: B58 article-title: Cclasso: correlation inference for compositional data through lasso. publication-title: Bioinformatics doi: 10.1093/bioinformatics/btv349 – volume: 25 start-page: 223 year: 2020 ident: B130 article-title: Promoting model systems of microbiota-medicinal plant interactions. publication-title: Trends Plant Sci. doi: 10.1016/j.tplants.2019.12.013 – volume: 118 start-page: 178 year: 2018 ident: B223 article-title: Co-occurrence patterns of soybean rhizosphere microbiome at a continental scale. publication-title: Soil Biol. Biochem. doi: 10.1016/j.soilbio.2017.12.011 – volume: 19 start-page: 776 year: 2018 ident: B4 article-title: Integration of multi-omics data and deep phenotyping enables prediction of cytokine responses. publication-title: Nat. Immunol. doi: 10.1038/s41590-018-0121-3 – volume: 49 start-page: 34 year: 2019 ident: B52 article-title: Tracing the evolutionary routes of plant–microbiota interactions. publication-title: Curr. Opin. Microbiol. doi: 10.1016/j.mib.2019.09.013 – volume: 8 year: 2012 ident: B63 article-title: Inferring correlation networks from genomic survey data. publication-title: PLoS Comput. Biol. doi: 10.1371/journal.pcbi.1002687 – volume: 5 year: 2017 ident: B80 article-title: Evolution of gut microbiota composition from birth to 24 weeks in the infantmet cohort. publication-title: Microbiome doi: 10.1186/s40168-016-0213-y – volume: 17 year: 2016 ident: B145 article-title: Mminte: an application for predicting metabolic interactions among the microbial species in a community. publication-title: BMC Bioinformatics doi: 10.1186/s12859-016-1230-3 – year: 2019 ident: B203 article-title: Transcriptomic analysis of field-droughted sorghum from seedling to maturity reveals biotic and metabolic responses. publication-title: Proc Natl Acad Sci U S A. doi: 10.1073/pnas.1907500116 – volume: 233 year: 2020 ident: B218 article-title: Isolation and characterization of Burkholderia cenocepacia CR318, a phosphate solubilizing bacterium promoting corn growth. publication-title: Microbiol. Res. doi: 10.1016/j.micres.2019.126395 – volume: 1 year: 2011 ident: B110 article-title: Predicted relative metabolomic turnover (prmt): determining metabolic turnover from a coastal marine metagenomic dataset. publication-title: Microb. Inform. Exp. doi: 10.1186/2042-5783-1-4 – volume: 24 start-page: 83 year: 2019 ident: B57 article-title: Exploring the diversity of plant metabolism. publication-title: Trends Plant Sci. doi: 10.1016/j.tplants.2018.09.006 – volume: 150 start-page: 39 year: 2020 ident: B45 article-title: Plant surface metabolites as potent antifungal agents. publication-title: Plant Physiol. Biochem. doi: 10.1016/j.plaphy.2020.02.026 – volume: 6 year: 2020 ident: B87 article-title: Temporospatial shifts in the human gut microbiome and metabolome after gastric bypass surgery. publication-title: NPJ Biofilms Microbiomes. doi: 10.1038/s41522-020-0122-5 – volume: 11 year: 2020 ident: B158 article-title: Functional imaging of microbial interactions with tree roots using a microfluidics setup. publication-title: Front. Plant Sci. doi: 10.3389/fpls.2020.00408 – volume: 19 year: 2018 ident: B228 article-title: Hmmufotu: an hmm and phylogenetic placement based ultra-fast taxonomic assignment and otu picking tool for microbiome amplicon sequencing studies. publication-title: Genome Biol. doi: 10.1186/s13059-018-1450-0 – volume: 8 year: 2012 ident: B60 article-title: Microbial co-occurrence relationships in the human microbiome. publication-title: PLoS Comput. Biol. doi: 10.1371/journal.pcbi.1002606 – volume: 7 year: 2019 ident: B166 article-title: Deciphering rhizosphere microbiome assembly of wild and modern common bean (Phaseolus vulgaris) in native and agricultural soils from colombia. publication-title: Microbiome doi: 10.1186/s40168-019-0727-1 – volume: 23 start-page: 25 year: 2018 ident: B178 article-title: Feed your friends: do plant exudates shape the root microbiome? publication-title: Trends Plant Sci. doi: 10.1016/j.tplants.2017.09.003 – volume: 27 start-page: 601.e7 year: 2020 ident: B210 article-title: An Arabidopsis secondary metabolite directly targets expression of the bacterial type iii secretion system to inhibit bacterial virulence. publication-title: Cell Host Microbe doi: 10.1016/j.chom.2020.03.004 – volume: 85 year: 2019 ident: B64 article-title: Bacterial and fungal endophytic microbiomes of salicornia europaea. publication-title: Appl. Environ. Microbiol. doi: 10.1128/AEM.00305-19 – volume: 15 start-page: 382 year: 2014 ident: B70 article-title: The treatment-naive microbiome in new-onset crohn’s disease. publication-title: Cell Host Microbe. doi: 10.1016/j.chom.2014.02.005 – volume: 9 year: 2020 ident: B89 article-title: Recent advances in the role of plant metabolites in shaping the root microbiome [version 1; peer review: 3 approved]. publication-title: F1000Res doi: 10.12688/f1000research.21796.1 – volume: 144 start-page: 782 year: 2019 ident: B47 article-title: Advances in mass spectrometry based single-cell metabolomics. publication-title: Analyst doi: 10.1039/c8an01581c – volume: 34 start-page: 1235 year: 2018 ident: B142 article-title: Biobakery: a meta’omic analysis environment. publication-title: Bioinformatics doi: 10.1093/bioinformatics/btx754 – volume: 62 start-page: 947 year: 2019 ident: B30 article-title: Recently duplicated sesterterpene (c25) gene clusters in Arabidopsis thaliana modulate root microbiota. publication-title: Sci. China Life Sci. doi: 10.1007/s11427-019-9521-2 – volume: 10 year: 2020 ident: B33 article-title: Jasmonic acid, not salicyclic acid restricts endophytic root colonization of rice. publication-title: Front. Plant Sci. doi: 10.3389/fpls.2019.01758 – volume: 17 start-page: 223 year: 2020 ident: B111 article-title: Gut microbiota-derived metabolites as key actors in inflammatory bowel disease. publication-title: Nat. Rev. Gastroenterol. Hepatol. doi: 10.1038/s41575-019-0258-z – volume: 117 start-page: 3874 year: 2020 ident: B103 article-title: Rhizosphere microbiome mediates systemic root metabolite exudation by root-to-root signaling. publication-title: Proc. Natl. Acad. Sci. U.S.A. doi: 10.1073/pnas.1912130117 – volume: 62 start-page: 1111 year: 2019 ident: B209 article-title: Plant specialized metabolites modulate root microbiomes. publication-title: Sci. China Life Sci. doi: 10.1007/s11427-019-9579-6 – volume: 225 start-page: 1899 year: 2020 ident: B214 article-title: Plant root exudation under drought: implications for ecosystem functioning. publication-title: New Phytol. doi: 10.1111/nph.16223 – volume: 5 year: 2017 ident: B77 article-title: Deciphering composition and function of the root microbiome of a legume plant. publication-title: Microbiome doi: 10.1186/s40168-016-0220-z – volume: 14 start-page: 251 year: 2016 ident: B6 article-title: The ecology and biogeochemistry of stream biofilms. publication-title: Nat. Rev. Microbiol. doi: 10.1038/nrmicro.2016.15 – volume: 6 year: 2020 ident: B226 article-title: Fungal-nematode interactions: diversity, ecology and biocontrol prospects in agriculture. publication-title: J. Fungi. doi: 10.3390/jof6040206 – volume: 92 start-page: 147 year: 2017 ident: B168 article-title: Metabolite profiling of non-sterile rhizosphere soil. publication-title: Plant J. doi: 10.1111/tpj.13639 – volume: 37 start-page: 676 year: 2019 ident: B225 article-title: Nrt1.1b is associated with root microbiota composition and nitrogen use in field-grown rice. publication-title: Nat. Biotechnol. doi: 10.1038/s41587-019-0104-4 – volume: 9 year: 2018 ident: B149 article-title: Ethylene and 1-aminocyclopropane-1-carboxylate (acc) in plant–bacterial interactions. publication-title: Front. Plant Sci. doi: 10.3389/fpls.2018.00114 – volume: 20 start-page: 1512 year: 2007 ident: B96 article-title: Salicylic acid and jasmonic acid signaling defense pathways reduce natural bacterial diversity on Arabidopsis thaliana. publication-title: Mol. Plant Microbe Interact. doi: 10.1094/mpmi-20-12-1512 – year: 2019 ident: B172 article-title: A thorough comprehension of host endophytic interaction entailing the biospherical benefits: a metabolomic perspective publication-title: Endophytes and Secondary Metabolites doi: 10.1007/978-3-319-90484-9_16 – volume: 12 start-page: 1252 year: 2018 ident: B182 article-title: Calling from distance: attraction of soil bacteria by plant root volatiles. publication-title: ISME J. doi: 10.1038/s41396-017-0035-3 – volume: 116 start-page: 12558 year: 2019 ident: B207 article-title: Plant-derived coumarins shape the composition of an Arabidopsis synthetic root microbiome. publication-title: Proc. Natl. Acad. Sci. U.S.A. doi: 10.1073/pnas.1820691116 – volume: 37 start-page: 42 year: 2017 ident: B24 article-title: Jasmonic acid signalling and the plant holobiont. publication-title: Curr. Opin. Microbiol. doi: 10.1016/j.mib.2017.03.009 – volume: 9 year: 2018 ident: B82 article-title: Root exudate metabolites drive plant-soil feedbacks on growth and defense by shaping the rhizosphere microbiota. publication-title: Nat. Commun. doi: 10.1038/s41467-018-05122-7 – year: 2020 ident: B120 article-title: A practical guide to amplicon and metagenomic analysis of microbiome data. publication-title: Protein Cell doi: 10.1007/s13238-020-00724-8 – ident: B53 article-title: Laser ablation electrospray ionization-mass spectrometry imaging (laesi-ms) for spatially resolved plant metabolomics publication-title: Plant Metabolomics: Methods and Protocols – volume: 1 year: 2015 ident: B75 article-title: Associations with rhizosphere bacteria can confer an adaptive advantage to plants. publication-title: Nat. Plants doi: 10.1038/nplants.2015.51 – volume: 4 year: 2013 ident: B97 article-title: The microbiome of medicinal plants: diversity and importance for plant growth, quality and health. publication-title: Front. Microbiol. doi: 10.3389/fmicb.2013.00400 – volume: 6 start-page: 1769 year: 2013 ident: B32 article-title: A novel integrated method for large-scale detection, identification, and quantification of widely targeted metabolites: application in the study of rice metabolomics. publication-title: Mol. Plant. doi: 10.1093/mp/sst080 – volume: 258 year: 2020 ident: B31 article-title: Host identity determines plant associated resistomes. publication-title: Environ. Pollut. doi: 10.1016/j.envpol.2019.113709 – volume: 11 year: 2015 ident: B122 article-title: Proportionality: a valid alternative to correlation for relative data. publication-title: PLoS Comput. Biol. doi: 10.1371/journal.pcbi.1004075 – volume: 221 start-page: 2123 year: 2019 ident: B55 article-title: Plant-mediated effects of soil phosphorus on the root-associated fungal microbiota in Arabidopsis thaliana. publication-title: New Phytol. doi: 10.1111/nph.15538 – volume: 19 start-page: 29 year: 2019 ident: B37 article-title: A review on the plant microbiome: ecology, functions, and emerging trends in microbial application. publication-title: J. Adv. Res. doi: 10.1016/j.jare.2019.03.004 – volume: 39 start-page: 3 year: 2020 ident: B206 article-title: Root exudates: from plant to rhizosphere and beyond. publication-title: Plant Cell Rep. doi: 10.1007/s00299-019-02447-5 – volume: 49 start-page: 115 year: 2018 ident: B95 article-title: Plant secondary metabolite diversity and species interactions. publication-title: Annu. Rev. Ecol. Evol. Syst. doi: 10.1146/annurev-ecolsys-110617-062406 – volume: 20 year: 2019 ident: B18 article-title: Imap: an integrated bioinformatics and visualization pipeline for microbiome data analysis. publication-title: BMC Bioinformatics doi: 10.1186/s12859-019-2965-4 – year: 2017 ident: B81 article-title: Commonalities in symbiotic plant-microbe signalling publication-title: Advances in Botanical Research doi: 10.1016/bs.abr.2016.11.003 – volume: 36 start-page: 3493 year: 2020 ident: B154 article-title: M2ia: a web server for microbiome and metabolome integrative analysis. publication-title: Bioinformatics doi: 10.1093/bioinformatics/btaa188 – volume: 683 start-page: 202 year: 2019 ident: B28 article-title: Enrichment of soil rare bacteria in root by an invasive plant ageratina adenophora. publication-title: Sci. Total Environ. doi: 10.1016/j.scitotenv.2019.05.220 – volume: 115 start-page: 5629 year: 2018 ident: B125 article-title: Root-exuded coumarin shapes the root microbiome. publication-title: Proc. Natl. Acad. Sci. U.S.A. doi: 10.1073/pnas.1805944115 – volume: 6 year: 2018 ident: B40 article-title: Simple statistical identification and removal of contaminant sequences in marker-gene and metagenomics data. publication-title: Microbiome doi: 10.1186/s40168-018-0605-2 – volume: 26 start-page: 183 year: 2019 ident: B35 article-title: Plant-microbe interactions facing environmental challenge. publication-title: Cell Host Microbe. doi: 10.1016/j.chom.2019.07.009 – volume: 7 year: 2017 ident: B129 article-title: Plant-endophytes interaction influences the secondary metabolism in echinacea purpurea (l.) moench: an in vitro model. publication-title: Sci. Rep. doi: 10.1038/s41598-017-17110-w – volume: 116 start-page: 15735 year: 2019 ident: B101 article-title: Root-specific camalexin biosynthesis controls the plant growth-promoting effects of multiple bacterial strains. publication-title: Proc. Natl. Acad. Sci. U.S.A. doi: 10.1073/pnas.1818604116 – volume: 24 start-page: 187 year: 2019 ident: B116 article-title: Plant defense by voc-induced microbial priming. publication-title: Trends Plant Sci. doi: 10.1016/j.tplants.2019.01.008 – volume: 6 year: 2018 ident: B220 article-title: Root exudates drive the soil-borne legacy of aboveground pathogen infection. publication-title: Microbiome doi: 10.1186/s40168-018-0537-x – volume: 10 year: 2019 ident: B231 article-title: Patterns of PCR amplification artifacts of the fungal barcode marker in a hybrid mushroom. publication-title: Front. Microbiol. doi: 10.3389/fmicb.2019.02686 – volume: 25 start-page: 226 year: 2020 ident: B7 article-title: A model for nitrogen fixation in cereal crops. publication-title: Trends Plant Sci. doi: 10.1016/j.tplants.2019.12.004 – volume: 45 start-page: W180 year: 2017 ident: B42 article-title: Microbiomeanalyst: a web-based tool for comprehensive statistical, visual and meta-analysis of microbiome data. publication-title: Nucleic Acids Res. doi: 10.1093/nar/gkx295 – volume: 10 start-page: 1669 year: 2016 ident: B212 article-title: Correlation detection strategies in microbial data sets vary widely in sensitivity and precision. publication-title: ISME J. doi: 10.1038/ismej.2015.235 – volume: 78 start-page: 914 year: 2019 ident: B137 article-title: Functional fungal endophytes in coleus forskohlii regulate labdane diterpene biosynthesis for elevated forskolin accumulation in roots. publication-title: Microb. Ecol. doi: 10.1007/s00248-019-01376-w – volume: 17 year: 2016 ident: B201 article-title: Separating common from distinctive variation. publication-title: BMC Bioinformatics doi: 10.1186/s12859-016-1037-2 – volume: 31 year: 2017 ident: B185 article-title: Common and distinct components in data fusion. publication-title: J. Chemom. doi: 10.1002/cem.2900 – volume: 360 start-page: 1 year: 2012 ident: B3 article-title: Harnessing the rhizosphere microbiome through plant breeding and agricultural management. publication-title: Plant Soil. doi: 10.1007/s11104-012-1361-x – volume: 17 start-page: 260 year: 2015 ident: B105 article-title: The dynamics of the human infant gut microbiome in development and in progression toward type 1 diabetes. publication-title: Cell Host Microbe. doi: 10.1016/j.chom.2015.01.001 – volume: 6 start-page: 973 year: 2015 ident: B74 article-title: Pipits: an automated pipeline for analyses of fungal internal transcribed spacer sequences from the illumina sequencing platform. publication-title: Methods Ecol. Evol. doi: 10.1111/2041-210x.12399 – year: 2019 ident: B208 article-title: A genomic island in a plant beneficial rhizobacterium encodes novel antimicrobial fatty acids and a self-protection shield to enhance its competition. publication-title: Environ. Microbiol. doi: 10.1111/1462-2920.14683 – volume: 81 start-page: 1001 year: 2009 ident: B92 article-title: Bacterial volatiles and their action potential. publication-title: Appl. Microbiol. Biotechnol. doi: 10.1007/s00253-008-1760-3 – volume: 10 year: 2019 ident: B199 article-title: Dual mode of the saponin aescin in plant protection: antifungal agent and plant defense elicitor. publication-title: Front. Plant Sci. doi: 10.3389/fpls.2019.01448 – volume: 5 start-page: 498 year: 2020 ident: B69 article-title: Spatial metabolomics of in situ host–microbe interactions at the micrometre scale. publication-title: Nat. Microbiol. doi: 10.1038/s41564-019-0664-6 – volume: 49 start-page: 97 year: 2019 ident: B119 article-title: Reductionist synthetic community approaches in root microbiome research. publication-title: Curr. Opin. Microbiol. doi: 10.1016/j.mib.2019.10.010 – volume: 22 start-page: 561 year: 2020 ident: B147 article-title: The connection and disconnection between microbiome and metabolome: a critical appraisal in clinical research. publication-title: Biol. Res. Nurs. doi: 10.1177/1099800420903083 – volume: 19 start-page: 57 year: 2019 ident: B181 article-title: Driving factors of epiphytic bacterial communities: a review. publication-title: J. Adv. Res. doi: 10.1016/j.jare.2019.03.003 – volume: 12 year: 2020 ident: B164 article-title: Root flavonoids are related to enhanced amf colonization of an invasive tree. publication-title: AoB Plants doi: 10.1093/aobpla/plaa002 – volume: 109 start-page: 594 year: 2012 ident: B72 article-title: Metagenomic systems biology of the human gut microbiome reveals topological shifts associated with obesity and inflammatory bowel disease. publication-title: Proc. Natl. Acad. Sci. U.S.A. doi: 10.1073/pnas.1116053109 – volume: 108 start-page: 95 year: 2014 ident: B197 article-title: The fungal leaf endophyte paraconiothyrium variabile specifically metabolizes the host-plant metabolome for its own benefit. publication-title: Phytochemistry doi: 10.1016/j.phytochem.2014.09.021 – volume: 368 year: 2020 ident: B41 article-title: Harnessing rhizosphere microbiomes for drought-resilient crop production. publication-title: Science doi: 10.1126/science.aaz5192 – volume: 18 start-page: 241 year: 2019 ident: B71 article-title: Comprehensive review of antimicrobial activities of plant flavonoids. publication-title: Phytochem. Rev. doi: 10.1007/s11101-018-9591-z – volume: 31 start-page: 431 year: 2014 ident: B192 article-title: Flavonoids in plant rhizospheres: secretion, fate and their effects on biological communication. publication-title: Plant Biotechnol. doi: 10.5511/plantbiotechnology.14.0917a – volume: 55 start-page: 47 year: 2020 ident: B104 article-title: Towards a functional understanding of the plant metabolome. publication-title: Curr. Opin. Plant Biol. doi: 10.1016/j.pbi.2020.02.005 – volume: 19 start-page: 67 year: 2019 ident: B191 article-title: The soybean rhizosphere: metabolites, microbes, and beyond-a review. publication-title: J. Adv. Res. doi: 10.1016/j.jare.2019.03.005 – volume: 8 year: 2017 ident: B86 article-title: Evolution of the crop rhizosphere: impact of domestication on root exudates in tetraploid wheat (Triticum turgidum l.). publication-title: Front. Plant Sci. doi: 10.3389/fpls.2017.02124 – volume: 7 year: 2017 ident: B85 article-title: Alleviation of drought stress by mycorrhizas is related to increased root h2o2 efflux in trifoliate orange. publication-title: Sci Rep. doi: 10.1038/srep42335 – volume: 113 start-page: 6496 year: 2016 ident: B114 article-title: Root exudates drive interspecific facilitation by enhancing nodulation and n2 fixation. publication-title: Proc. Natl. Acad. Sci. U.S.A. doi: 10.1073/pnas.1523580113 – volume: 4 start-page: 701 year: 2009 ident: B160 article-title: The role of microbial signals in plant growth and development. publication-title: Plant Signal. Behav. doi: 10.4161/psb.4.8.9047 – volume: 1437 start-page: 127 year: 2016 ident: B126 article-title: Optimization of large-scale pseudotargeted metabolomics method based on liquid chromatography–mass spectrometry. publication-title: J. Chromatogr. A doi: 10.1016/j.chroma.2016.01.078 – volume: 123 start-page: 75 year: 2018 ident: B161 article-title: Plant growth-promoting rhizobacteria (pgpr) in cannabis sativa ‘finola’ cultivation: an alternative fertilization strategy to improve plant growth and quality characteristics. publication-title: Indust. Crops Prod. doi: 10.1016/j.indcrop.2018.06.033 – volume: 17 start-page: 392 year: 2015 ident: B16 article-title: Structure and function of the bacterial root microbiota in wild and domesticated barley. publication-title: Cell Host Microbe. doi: 10.1016/j.chom.2015.01.011 – year: 2019 ident: B180 article-title: Linking soil’s volatilome to microbes and plant roots highlights the importance of microbes as emitters of belowground volatile signals. publication-title: Environ. Microbiol. doi: 10.1111/1462-2920.14599 – volume: 31 start-page: 2947 ident: B9 article-title: A promiscuous cyp706a3 reduces terpene volatile emission from Arabidopsis flowers, affecting florivores and the floral microbiome. publication-title: Plant Cell doi: 10.1105/tpc.19.00320 – volume: 10 year: 2019 ident: B124 article-title: A bioinformatics guide to plant microbiome analysis. publication-title: Front. Plant Sci. doi: 10.3389/fpls.2019.01313 – volume: 31 start-page: 3476 year: 2015 ident: B50 article-title: Error filtering, pair assembly and error correction for next-generation sequencing reads. publication-title: Bioinformatics doi: 10.1093/bioinformatics/btv401 – volume: 26 start-page: 169 year: 2020 ident: B187 article-title: Coumarin communication along the microbiome–root–shoot axis. publication-title: Trends Plant Sci. doi: 10.1016/j.tplants.2020.09.008 – volume: 349 start-page: 860 year: 2015 ident: B112 article-title: Plant microbiome. Salicylic acid modulates colonization of the root microbiome by specific bacterial taxa. publication-title: Science doi: 10.1126/science.aaa8764 – volume: 6 year: 2019 ident: B146 article-title: Increasing access to microfluidics for studying fungi and other branched biological structures. publication-title: Fungal Biol. Biotechnol. doi: 10.1186/s40694-019-0071-z – volume: 5 year: 2017 ident: B227 article-title: Huanglongbing impairs the rhizosphere-to-rhizoplane enrichment process of the citrus root-associated microbiome. publication-title: Microbiome doi: 10.1186/s40168-017-0304-4 – volume: 4 year: 2016 ident: B177 article-title: Vsearch: a versatile open source tool for metagenomics. publication-title: PeerJ. doi: 10.7717/peerj.2584 – volume: 208 start-page: 79 year: 2015 ident: B65 article-title: Molecular signals required for the establishment and maintenance of ectomycorrhizal symbioses. publication-title: New Phytol. doi: 10.1111/nph.13423 – volume: 34 start-page: 2232 ident: B127 article-title: Volatile profile of echinacea purpurea plants after in vitro endophyte infection. publication-title: Nat. Prod. Res. doi: 10.1080/14786419.2019.1579810 – volume: 157 start-page: 317 year: 2011 ident: B1 article-title: Benzoxazinoid metabolites regulate innate immunity against aphids and fungi in maize. publication-title: Plant Physiol. doi: 10.1104/pp.111.180224 – volume: 12 start-page: 804 year: 2019 ident: B176 article-title: Systems biology of plant-microbiome interactions. publication-title: Mol. Plant doi: 10.1016/j.molp.2019.05.006 – volume: 8 year: 2020 ident: B194 article-title: Cannabis microbiome and the role of endophytes in modulating the production of secondary metabolites: an overview. publication-title: Microorganisms doi: 10.3390/microorganisms8030355 – volume: 175 start-page: 973.e14 year: 2018 ident: B48 article-title: Microbial interkingdom interactions in roots promote Arabidopsis survival. publication-title: Cell doi: 10.1016/j.cell.2018.10.020 – volume: 286 start-page: 118 year: 2019 ident: B151 article-title: Strigolactones shape the rhizomicrobiome in rice (Oryza sativa). publication-title: Plant Sci. doi: 10.1016/j.plantsci.2019.05.016 – volume: 14 start-page: 416 year: 2019 ident: B94 article-title: Integrated phytohormone production by the plant growth-promoting rhizobacterium Bacillus tequilensis SSB07 induced thermotolerance in soybean. publication-title: J. Plant Interact. doi: 10.1080/17429145.2019.1640294 – volume: 114 start-page: 4549 year: 2017 ident: B136 article-title: Live imaging of root-bacteria interactions in a microfluidics setup. publication-title: Proc. Natl. Acad. Sci. U.S.A. doi: 10.1073/pnas.1618584114 – volume: 218 start-page: 131 year: 2018 ident: B113 article-title: Dynamics of oxygen and carbon dioxide in rhizospheres of lobelia dortmanna – a planar optode study of belowground gas exchange between plants and sediment. publication-title: New Phytol. doi: 10.1111/nph.14973 – volume: 17 year: 2019 ident: B62 article-title: The effects of soil phosphorus content on plant microbiota are driven by the plant phosphate starvation response. publication-title: PLoS Biol. doi: 10.1371/journal.pbio.3000534 – volume: 89 start-page: 7549 year: 2017 ident: B144 article-title: Coupling targeted and untargeted mass spectrometry for metabolome-microbiome-wide association studies of human fecal samples. publication-title: Anal. Chem. doi: 10.1021/acs.analchem.7b01381 – volume: 35 start-page: 81 year: 2017 ident: B132 article-title: Generation of genome-scale metabolic reconstructions for 773 members of the human gut microbiota. publication-title: Nat. Biotechnol. doi: 10.1038/nbt.3703 – volume: 104 start-page: 1566 year: 2016 ident: B46 article-title: Systemic enrichment of antifungal traits in the rhizosphere microbiome after pathogen attack. publication-title: J. Ecol. doi: 10.1111/1365-2745.12626 – volume: 16 year: 2018 ident: B79 article-title: Design of synthetic bacterial communities for predictable plant phenotypes. publication-title: PLoS Biol. doi: 10.1371/journal.pbio.2003962 – volume: 7 start-page: 335 year: 2010 ident: B19 article-title: Qiime allows analysis of high-throughput community sequencing data. publication-title: Nat. Methods doi: 10.1038/nmeth.f.303 – volume: 8 year: 2019 ident: B219 article-title: Imicrobe: tools and data-dreaiven discovery platform for the microbiome sciences. publication-title: Gigascience doi: 10.1093/gigascience/giz083 – volume: 31 start-page: 803 year: 2018 ident: B90 article-title: Exometabolomic profiling of bacterial strains as cultivated using Arabidopsis root extract as the sole carbon source. publication-title: Mol. Plant Microbe Interact. doi: 10.1094/mpmi-10-17-0253-r – volume: 366 start-page: 606 year: 2019 ident: B20 article-title: Pathogen-induced activation of disease-suppressive functions in the endophytic root microbiome. publication-title: Science doi: 10.1126/science.aaw9285 – volume: 190 start-page: 619 year: 2019 ident: B205 article-title: Soil-mediated impacts of an invasive thistle inhibit the recruitment of certain native plants. publication-title: Oecologia doi: 10.1007/s00442-019-04435-8 – volume: 15 start-page: 583 ident: B10 article-title: Natural fumigation as a mechanism for volatile transport between flower organs. publication-title: Nat. Chem. Biol. doi: 10.1038/s41589-019-0287-5 – volume: 149 start-page: 1579 year: 2009 ident: B38 article-title: Trichoderma virens, a plant beneficial fungus, enhances biomass production and promotes lateral root growth through an auxin-dependent mechanism in Arabidopsis. publication-title: Plant Physiol. doi: 10.1104/pp.108.130369 – volume: 16 start-page: 1306 year: 2019 ident: B148 article-title: Learning representations of microbe-metabolite interactions. publication-title: Nat. Methods doi: 10.1038/s41592-019-0616-3 – year: 2019 ident: B167 publication-title: Antimicrobial and Anti-Quorum Sensing Activities of Medicinal Plants. – volume: 23 start-page: 559 year: 2018 ident: B84 article-title: Roles of plant-associated microbiota in traditional herbal medicine. publication-title: Trends Plant Sci. doi: 10.1016/j.tplants.2018.05.003 – volume: 334 start-page: 1518 year: 2011 ident: B175 article-title: Detecting novel associations in large data sets. publication-title: Science doi: 10.1126/science.1205438 – volume: 28 start-page: 11 year: 2018 ident: B17 article-title: Bacteria colonising penstemon digitalis show volatile and tissue-specific responses to a natural concentration range of the floral volatile linalool. publication-title: Chemoecology doi: 10.1007/s00049-018-0252-x – volume: 693 year: 2019 ident: B217 article-title: Significant alterations in soil fungal communities along a chronosequence of spartina alterniflora invasion in a chinese yellow sea coastal wetland. publication-title: Sci. Total Environ. doi: 10.1016/j.scitotenv.2019.07.354 – volume: 27 start-page: 30 year: 2014 ident: B14 article-title: Metabolic potential of endophytic bacteria. publication-title: Curr. Opin. Biotechnol. doi: 10.1016/j.copbio.2013.09.012 – volume: 4 year: 2014 ident: B165 article-title: Removal of floral microbiota reduces floral terpene emissions. publication-title: Sci. Rep. doi: 10.1038/srep06727 – volume: 172 start-page: 1178 year: 2018 ident: B5 article-title: The soil-borne legacy. publication-title: Cell doi: 10.1016/j.cell.2018.02.024 – volume: 287 year: 2020 ident: B174 article-title: Bacterial community richness shifts the balance between volatile organic compound-mediated microbe–pathogen and microbe–plant interactions. publication-title: Proc. R. Soc. B Biol. Sci. doi: 10.1098/rspb.2020.0403 – volume: 28 start-page: 1049 year: 2015 ident: B21 article-title: Linking jasmonic acid signaling, root exudates, and rhizosphere microbiomes. publication-title: Mol. Plant Microbe Interact. doi: 10.1094/MPMI-01-15-0016-R – volume: 18 start-page: 525 year: 2016 ident: B134 article-title: Microbiome–metabolome analysis reveals unhealthy alterations in the composition and metabolism of ruminal microbiota with increasing dietary grain in a goat model. publication-title: Environ. Microbiol. doi: 10.1111/1462-2920.12724 – volume: 24 start-page: 395 year: 2011 ident: B43 article-title: Effects of jasmonic acid, ethylene, and salicylic acid signaling on the rhizosphere bacterial community of Arabidopsis thaliana. publication-title: Mol. Plant Microbe Interact. doi: 10.1094/mpmi-05-10-0115 – volume: 55 start-page: 1 year: 2020 ident: B230 article-title: More is better: the diversity of terpene metabolism in plants. publication-title: Curr. Opin. Plant Biol. doi: 10.1016/j.pbi.2020.01.005 – volume: 10 start-page: 996 year: 2013 ident: B49 article-title: Uparse: highly accurate otu sequences from microbial amplicon reads. publication-title: Nat. Methods doi: 10.1038/nmeth.2604 – volume: 21 start-page: 854 year: 2016 ident: B59 article-title: Bidirectional interaction between phyllospheric microbiotas and plant volatile emissions. publication-title: Trends Plant Sci. doi: 10.1016/j.tplants.2016.06.005 – volume: 180 start-page: 862.e22 year: 2020 ident: B153 article-title: A cardiovascular disease-linked gut microbial metabolite acts via adrenergic receptors. publication-title: Cell doi: 10.1016/j.cell.2020.02.016 – volume: 7 year: 2017 ident: B118 article-title: Effects of jasmonic acid signalling on the wheat microbiome differ between body sites. publication-title: Sci. Rep. doi: 10.1038/srep41766 – volume: 587 start-page: 103 year: 2020 ident: B61 article-title: A single bacterial genus maintains root growth in a complex microbiome. publication-title: Nature doi: 10.1038/s41586-020-2778-7 – volume: 36 start-page: 1840 year: 2020 ident: B140 article-title: Mdine: a model to estimate differential co-occurrence networks in microbiome studies. publication-title: Bioinformatics doi: 10.1093/bioinformatics/btz824 – volume: 1 year: 2013 ident: B141 article-title: Integrative analysis of the microbiome and metabolome of the human intestinal mucosal surface reveals exquisite inter-relationships. publication-title: Microbiome doi: 10.1186/2049-2618-1-17 – volume: 574 start-page: 938 year: 2017 ident: B188 article-title: Few effects of invasive plants reynoutria japonica, rudbeckia laciniata and solidago gigantea on soil physical and chemical properties. publication-title: Sci. Total Environ. doi: 10.1016/j.scitotenv.2016.09.120 – volume: 115 year: 2018 ident: B215 article-title: Drought delays development of the sorghum root microbiome and enriches for monoderm bacteria. publication-title: Proc. Natl. Acad. Sci. U.S.A. doi: 10.1073/pnas.1807275115 – volume: 11 year: 2020 ident: B66 article-title: Identification of root-associated bacteria that influence plant physiology, increase seed germination, or promote growth of the christmas tree species Abies nordmanniana. publication-title: Front. Microbiol. doi: 10.3389/fmicb.2020.566613) |
| SSID | ssj0000500997 |
| Score | 2.687726 |
| SecondaryResourceType | review_article |
| Snippet | Plant secondary metabolites (PSMs) play many roles including defense against pathogens, pests, and herbivores; response to environmental stresses, and... |
| SourceID | doaj pubmedcentral proquest pubmed crossref |
| SourceType | Open Website Open Access Repository Aggregation Database Index Database Enrichment Source |
| StartPage | 621276 |
| SubjectTerms | Chromatography Corn Environmental stress Fourier transforms Genomes Herbivores Host plants Mass spectrometry Metabolism Metabolites Microbiomes multi-omics NMR Nuclear magnetic resonance Pests phytohormones Plant metabolism Plant Science rhizobia root exudates Scientific imaging Secondary metabolites Software Sustainable agriculture SynCom VOCs |
| SummonAdditionalLinks | – databaseName: Biological Science Database dbid: M7P link: http://cvtisr.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwpV3Nb9UwDLdg7MCF74_CQEXiwqG8tEmblgvaJiYObJoESLtF-XDHk0b7eO2Q9t8TN3mFh9AunCo1aevGdmLHzs8Ar6UmFK-KZdpxk4nC5pnWrM2cX5s1SpQWQ7EJeXJSn501p3HDbYhplZs5cZqoXW9pj3zB6QxJQ1G096sfGVWNouhqLKFxE24RSkIxpe6dznssrCQDSIbopPfFmkW7uiCM7iJ_WxG0ebW1Gk2g_f-yNP9OmPxjBTq6-7-034M70fZM94Ow3Icb2D2A3YPe24dXD-HwUyijkFIdozH9TJ6y0-ur9BhHLyl0VnlIdedi-_EyQDh9x-Fdup-GGMMj-Hr04cvhxyyWWMhsWVZjZnRetJJYpLkxZWNE6xoCqHGaucbVjDdOS6brWhsukdVomJBYFWibwgrBH8NO13f4FFKCPC5ty5n2PiersM5bRIaC1Y5g8XgCi81QKxvxx6kMxoXyfggxRxFzFDFHBeYk8GZ-YhWwN67pe0Dcm_sRavZ0o1-fq6iEynBvsdiKC8NRWMFNIbUurb96Kzc3eQJ7G_6pqMqD-s28BF7NzV4JKbKiO-wvPSH-_4SfqoV_xZMgKjMlnEtOKHwJyC0h2iJ1u6VbfpuAvqX_rF8Fnl1P1nO4TQMxJcYVe7Azri_xBezan-NyWL-cNOIXI8oUkA priority: 102 providerName: ProQuest |
| Title | Linking Plant Secondary Metabolites and Plant Microbiomes: A Review |
| URI | https://www.ncbi.nlm.nih.gov/pubmed/33737943 https://www.proquest.com/docview/3273896155 https://www.proquest.com/docview/2503437641 https://pubmed.ncbi.nlm.nih.gov/PMC7961088 https://doaj.org/article/b3022c634b3e4c43b27aa5c3b22311b1 |
| Volume | 12 |
| WOSCitedRecordID | wos000629148500001&url=https%3A%2F%2Fcvtisr.summon.serialssolutions.com%2F%23%21%2Fsearch%3Fho%3Df%26include.ft.matches%3Dt%26l%3Dnull%26q%3D |
| hasFullText | 1 |
| inHoldings | 1 |
| isFullTextHit | |
| isPrint | |
| journalDatabaseRights | – providerCode: PRVAON databaseName: DOAJ Open Access Full Text customDbUrl: eissn: 1664-462X dateEnd: 99991231 omitProxy: false ssIdentifier: ssj0000500997 issn: 1664-462X databaseCode: DOA dateStart: 20100101 isFulltext: true titleUrlDefault: https://www.doaj.org/ providerName: Directory of Open Access Journals – providerCode: PRVHPJ databaseName: ROAD: Directory of Open Access Scholarly Resources customDbUrl: eissn: 1664-462X dateEnd: 99991231 omitProxy: false ssIdentifier: ssj0000500997 issn: 1664-462X databaseCode: M~E dateStart: 20100101 isFulltext: true titleUrlDefault: https://road.issn.org providerName: ISSN International Centre – providerCode: PRVPQU databaseName: Agriculture Science Database customDbUrl: eissn: 1664-462X dateEnd: 99991231 omitProxy: false ssIdentifier: ssj0000500997 issn: 1664-462X databaseCode: M0K dateStart: 20110301 isFulltext: true titleUrlDefault: https://search.proquest.com/agriculturejournals providerName: ProQuest – providerCode: PRVPQU databaseName: Biological Science Database customDbUrl: eissn: 1664-462X dateEnd: 99991231 omitProxy: false ssIdentifier: ssj0000500997 issn: 1664-462X databaseCode: M7P dateStart: 20110301 isFulltext: true titleUrlDefault: http://search.proquest.com/biologicalscijournals providerName: ProQuest – providerCode: PRVPQU databaseName: ProQuest Central (subscription) customDbUrl: eissn: 1664-462X dateEnd: 99991231 omitProxy: false ssIdentifier: ssj0000500997 issn: 1664-462X databaseCode: BENPR dateStart: 20110301 isFulltext: true titleUrlDefault: https://www.proquest.com/central providerName: ProQuest – providerCode: PRVPQU databaseName: Publicly Available Content Database customDbUrl: eissn: 1664-462X dateEnd: 99991231 omitProxy: false ssIdentifier: ssj0000500997 issn: 1664-462X databaseCode: PIMPY dateStart: 20110301 isFulltext: true titleUrlDefault: http://search.proquest.com/publiccontent providerName: ProQuest |
| link | http://cvtisr.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwrV1Lj9MwEB7BsgcuiDdZlipIXDiEOrETJ9y2q65A0CriIZWT5VdEpSVdtdmV9sJvZybOVi1CcOHiSBknsT-PMzOy_Q3AK6mJxatgiXbcJCKzaaI1axKHtll76aX1IdmEnM_LxaKqd1J90Z6wQA8cgBsbjlbGFlwY7oUV3GRS69ziFT2T1PSBD5PVTjAVWL3J9ZFhXRKjsGrcXJwTO3eWvimI1LzYs0M9Xf-ffMzft0ru2J6z-3BvcBrjk9DYB3DLtw_hcLJCx-76EZx-DPkPYkpA1MWfKcR1en0dz3yHQ0yHjDexbt0gny0D99IPv3kbn8RhceAxfD2bfjl9lwy5ERKb50WXGJ1mjSRsNTcmr4xoXEXMMk4zV7mS8cppyXRZasOlZ6U3TEhfZN5WmRWCP4GDdtX6ZxATV3FuG840Bous8GXaeM-8YKUjPjsewfgGKWUH4nDKX3GuMIAgbBVhqwhbFbCN4PX2iYtAmvGXuhMCf1uP6K77G6gEalAC9S8liOD4ZujUMAc3itOpo4rWXSN4uRXj7KElEd361SU2BPsn8B8r8BVPw0hvW8K55ESfF4Hc04G9pu5L2uX3nqFb4mfx9330P_r2HO4SXP2-t-wYDrr1pX8Bh_aqW27WI7gtF-UI7kym8_rTqJ8EWM7YByplTeXPKcrr97P62y9bqw0Q |
| linkProvider | Directory of Open Access Journals |
| linkToHtml | http://cvtisr.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMw1V1Lb9QwEB6VbSV64f0IFAgSHDiEdWInTpAQagtVV91drUSR2lPwK2WlkiybFLR_it-IJy9YhHrrgVOk2EnGzueZscf-BuAFF8jiFRFPaCo9FijfE4Jknra2WRhuuDJNsgk-ncYnJ8lsA352Z2FwW2WnE2tFrQuFa-RDimdIEoyivVt88zBrFEZXuxQaDSyOzOqHnbKVb0fv7f99GQQHH473D702q4CnwjCqPCn8IOMolaBSholkmU6Qk0ULohMdE5powYmIYyEpNyQ2kjBuosCoJFCMUfvea7DJEOwD2JyNJrPTflWHhOhy8SYeamd_yTBbnCMreOC_jpBMPVqzf3WagH_5tn9v0fzD5h3c_N966xbcaL1rd7cZDrdhw-R3YGuvsB7w6i7sj5tEES5maqrcj7gWoMVy5U5MZccCnsYuXZHrtnwyb0iqvpryjbvrNlGUe_DpShpwHwZ5kZuH4CKpc6gySoSdVZPIxH5mDDGMxBqJ_6gDw-7XpqplWMdEH-epnWkhGFIEQ4pgSBswOPCqf2LRsItcUncP0dLXQ17w-kaxPEtbNZNKan0yFVEmqWGKURlwIUJlr9aP96XvwE6Hl7RVVmX6GywOPO-LrZrB2JHITXFhBbHtY9YYMfuKBw00e0ko5RR5Bh3ga6BdE3W9JJ9_qanMuf2stXOPLhfrGVw_PJ6M0_FoevQYtrFT6m2AwQ4MquWFeQJb6ns1L5dP2_HowuerBvUv0qFzvA |
| openUrl | ctx_ver=Z39.88-2004&ctx_enc=info%3Aofi%2Fenc%3AUTF-8&rfr_id=info%3Asid%2Fsummon.serialssolutions.com&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Ajournal&rft.genre=article&rft.atitle=Linking+Plant+Secondary+Metabolites+and+Plant+Microbiomes%3A+A+Review&rft.jtitle=Frontiers+in+plant+science&rft.au=Zhiqiang+Pang&rft.au=Zhiqiang+Pang&rft.au=Zhiqiang+Pang&rft.au=Jia+Chen&rft.date=2021-03-02&rft.pub=Frontiers+Media+S.A&rft.eissn=1664-462X&rft.volume=12&rft_id=info:doi/10.3389%2Ffpls.2021.621276&rft.externalDBID=DOA&rft.externalDocID=oai_doaj_org_article_b3022c634b3e4c43b27aa5c3b22311b1 |
| thumbnail_l | http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/lc.gif&issn=1664-462X&client=summon |
| thumbnail_m | http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/mc.gif&issn=1664-462X&client=summon |
| thumbnail_s | http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/sc.gif&issn=1664-462X&client=summon |