ChAMP: 450k Chip Analysis Methylation Pipeline
The Illumina Infinium HumanMethylation450 BeadChip is a new platform for high-throughput DNA methylation analysis. Several methods for normalization and processing of these data have been published recently. Here we present an integrated analysis pipeline offering a choice of the most popular normal...
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| Vydané v: | Bioinformatics Ročník 30; číslo 3; s. 428 - 430 |
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| Hlavní autori: | , , , , , , |
| Médium: | Journal Article |
| Jazyk: | English |
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England
Oxford University Press
01.02.2014
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| ISSN: | 1367-4803, 1367-4811, 1367-4811, 1460-2059 |
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| Abstract | The Illumina Infinium HumanMethylation450 BeadChip is a new platform for high-throughput DNA methylation analysis. Several methods for normalization and processing of these data have been published recently. Here we present an integrated analysis pipeline offering a choice of the most popular normalization methods while also introducing new methods for calling differentially methylated regions and detecting copy number aberrations.
Availability and implementation: ChAMP is implemented as a Bioconductor package in R. The package and the vignette can be downloaded at bioconductor.org
Contact: tiffany.morris@ucl.ac.uk |
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| AbstractList | The Illumina Infinium HumanMethylation450 BeadChip is a new platform for high-throughput DNA methylation analysis. Several methods for normalization and processing of these data have been published recently. Here we present an integrated analysis pipeline offering a choice of the most popular normalization methods while also introducing new methods for calling differentially methylated regions and detecting copy number aberrations.
ChAMP is implemented as a Bioconductor package in R. The package and the vignette can be downloaded at bioconductor.org The Illumina Infinium HumanMethylation450 BeadChip is a new platform for high-throughput DNA methylation analysis. Several methods for normalization and processing of these data have been published recently. Here we present an integrated analysis pipeline offering a choice of the most popular normalization methods while also introducing new methods for calling differentially methylated regions and detecting copy number aberrations. Availability and implementation: ChAMP is implemented as a Bioconductor package in R. The package and the vignette can be downloaded at bioconductor.org Contact: tiffany.morris@ucl.ac.uk The Illumina Infinium HumanMethylation450 BeadChip is a new platform for high-throughput DNA methylation analysis. Several methods for normalization and processing of these data have been published recently. Here we present an integrated analysis pipeline offering a choice of the most popular normalization methods while also introducing new methods for calling differentially methylated regions and detecting copy number aberrations. Availability and implementation: ChAMP is implemented as a Bioconductor package in R. The package and the vignette can be downloaded at bioconductor.org Contact: tiffany.morris@ucl.ac.uk The Illumina Infinium HumanMethylation450 BeadChip is a new platform for high-throughput DNA methylation analysis. Several methods for normalization and processing of these data have been published recently. Here we present an integrated analysis pipeline offering a choice of the most popular normalization methods while also introducing new methods for calling differentially methylated regions and detecting copy number aberrations.UNLABELLEDThe Illumina Infinium HumanMethylation450 BeadChip is a new platform for high-throughput DNA methylation analysis. Several methods for normalization and processing of these data have been published recently. Here we present an integrated analysis pipeline offering a choice of the most popular normalization methods while also introducing new methods for calling differentially methylated regions and detecting copy number aberrations.ChAMP is implemented as a Bioconductor package in R. The package and the vignette can be downloaded at bioconductor.orgAVAILABILITY AND IMPLEMENTATIONChAMP is implemented as a Bioconductor package in R. The package and the vignette can be downloaded at bioconductor.org The Illumina Infinium HumanMethylation450 BeadChip is a new platform for high-throughput DNA methylation analysis. Several methods for normalization and processing of these data have been published recently. Here we present an integrated analysis pipeline offering a choice of the most popular normalization methods while also introducing new methods for calling differentially methylated regions and detecting copy number aberrations.Availability and implementation: ChAMP is implemented as a Bioconductor package in R. The package and the vignette can be downloaded at bioconductor.orgContact: tiffany.morris super(c)l.ac.uk |
| Author | Wojdacz, Tomasz K. Morris, Tiffany J. Teschendorff, Andrew E. Chakravarthy, Ankur R. Butcher, Lee M. Feber, Andrew Beck, Stephan |
| Author_xml | – sequence: 1 givenname: Tiffany J. surname: Morris fullname: Morris, Tiffany J. – sequence: 2 givenname: Lee M. surname: Butcher fullname: Butcher, Lee M. – sequence: 3 givenname: Andrew surname: Feber fullname: Feber, Andrew – sequence: 4 givenname: Andrew E. surname: Teschendorff fullname: Teschendorff, Andrew E. – sequence: 5 givenname: Ankur R. surname: Chakravarthy fullname: Chakravarthy, Ankur R. – sequence: 6 givenname: Tomasz K. surname: Wojdacz fullname: Wojdacz, Tomasz K. – sequence: 7 givenname: Stephan surname: Beck fullname: Beck, Stephan |
| BackLink | https://www.ncbi.nlm.nih.gov/pubmed/24336642$$D View this record in MEDLINE/PubMed |
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| Title | ChAMP: 450k Chip Analysis Methylation Pipeline |
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