WIsH: who is the host? Predicting prokaryotic hosts from metagenomic phage contigs

WIsH predicts prokaryotic hosts of phages from their genomic sequences. It achieves 63% mean accuracy when predicting the host genus among 20 genera for 3 kbp-long phage contigs. Over the best current tool, WisH shows much improved accuracy on phage sequences of a few kbp length and runs hundreds of...

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Bibliographic Details
Published in:	Bioinformatics (Oxford, England) Vol. 33; no. 19; pp. 3113 - 3114
Main Authors:	Galiez, Clovis, Siebert, Matthias, Enault, François, Vincent, Jonathan, Söding, Johannes
Format:	Journal Article
Language:	English
Published:	England Oxford University Press (OUP) 01.10.2017 Oxford University Press
Subjects:	Applications Notes Archaea - virology Artificial Intelligence Bacteria - virology Bacteriology Bacteriophages - genetics Biodiversity and Ecology Computer Science Contig Mapping Environmental Sciences Genetics Global Changes Life Sciences Machine Learning Metagenomics - methods Microbiology and Parasitology Populations and Evolution Protistology Software
ISSN:	1367-4803, 1367-4811, 1367-4811
Online Access:	Get full text
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