WIsH: who is the host? Predicting prokaryotic hosts from metagenomic phage contigs

WIsH predicts prokaryotic hosts of phages from their genomic sequences. It achieves 63% mean accuracy when predicting the host genus among 20 genera for 3 kbp-long phage contigs. Over the best current tool, WisH shows much improved accuracy on phage sequences of a few kbp length and runs hundreds of...

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Published in:Bioinformatics (Oxford, England) Vol. 33; no. 19; pp. 3113 - 3114
Main Authors: Galiez, Clovis, Siebert, Matthias, Enault, François, Vincent, Jonathan, Söding, Johannes
Format: Journal Article
Language:English
Published: England Oxford University Press (OUP) 01.10.2017
Oxford University Press
Subjects:
Applications Notes
Archaea - virology
Artificial Intelligence
Bacteria - virology
Bacteriology
Bacteriophages - genetics
Biodiversity and Ecology
Computer Science
Contig Mapping
Environmental Sciences
Genetics
Global Changes
Life Sciences
Machine Learning
Metagenomics - methods
Microbiology and Parasitology
Populations and Evolution
Protistology
Software
ISSN:1367-4803, 1367-4811, 1367-4811
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Abstract WIsH predicts prokaryotic hosts of phages from their genomic sequences. It achieves 63% mean accuracy when predicting the host genus among 20 genera for 3 kbp-long phage contigs. Over the best current tool, WisH shows much improved accuracy on phage sequences of a few kbp length and runs hundreds of times faster, making it suited for metagenomics studies. OpenMP-parallelized GPL-licensed C ++ code available at https://github.com/soedinglab/wish. clovis.galiez@mpibpc.mpg.de or soeding@mpibpc.mpg.de. Supplementary data are available at Bioinformatics online.
AbstractList WIsH predicts prokaryotic hosts of phages from their genomic sequences. It achieves 63% mean accuracy when predicting the host genus among 20 genera for 3 kbp-long phage contigs. Over the best current tool, WisH shows much improved accuracy on phage sequences of a few kbp length and runs hundreds of times faster, making it suited for metagenomics studies.SUMMARYWIsH predicts prokaryotic hosts of phages from their genomic sequences. It achieves 63% mean accuracy when predicting the host genus among 20 genera for 3 kbp-long phage contigs. Over the best current tool, WisH shows much improved accuracy on phage sequences of a few kbp length and runs hundreds of times faster, making it suited for metagenomics studies.OpenMP-parallelized GPL-licensed C ++ code available at https://github.com/soedinglab/wish.AVAILABILITY AND IMPLEMENTATIONOpenMP-parallelized GPL-licensed C ++ code available at https://github.com/soedinglab/wish.clovis.galiez@mpibpc.mpg.de or soeding@mpibpc.mpg.de.CONTACTclovis.galiez@mpibpc.mpg.de or soeding@mpibpc.mpg.de.Supplementary data are available at Bioinformatics online.SUPPLEMENTARY INFORMATIONSupplementary data are available at Bioinformatics online.
WIsH predicts prokaryotic hosts of phages from their genomic sequences. It achieves 63% mean accuracy when predicting the host genus among 20 genera for 3 kbp-long phage contigs. Over the best current tool, WisH shows much improved accuracy on phage sequences of a few kbp length and runs hundreds of times faster, making it suited for metagenomics studies. OpenMP-parallelized GPL-licensed C ++ code available at https://github.com/soedinglab/wish. clovis.galiez@mpibpc.mpg.de or soeding@mpibpc.mpg.de. Supplementary data are available at Bioinformatics online.
Author Siebert, Matthias
Galiez, Clovis
Vincent, Jonathan
Söding, Johannes
Enault, François
AuthorAffiliation 1 Quantitative and Computational Biology Group, Max-Planck Institute for Biophysical Chemistry, 37077 Göttingen, Germany
2 Université Clermont Auvergne, CNRS, LMGE, Clermont-Ferrand, France
AuthorAffiliation_xml – name: 2 Université Clermont Auvergne, CNRS, LMGE, Clermont-Ferrand, France
– name: 1 Quantitative and Computational Biology Group, Max-Planck Institute for Biophysical Chemistry, 37077 Göttingen, Germany
Author_xml – sequence: 1
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BackLink https://www.ncbi.nlm.nih.gov/pubmed/28957499$$D View this record in MEDLINE/PubMed
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Cites_doi 10.3389/fmicb.2014.00714
10.1093/nar/gkw1002
10.1038/nature19094
10.1038/nrmicro1163
10.3389/fcimb.2014.00039
10.1093/nar/gku1207
10.1038/nrmicro1750
10.1016/j.cub.2014.07.046
10.1038/nrmicro3330
10.1093/nar/gkw1092
10.1038/ismej.2016.89
10.3390/v8050116
10.1093/femsre/fuv048
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References Bolduc (2023020206472456000_btx383-B2) 2016; 11
De Paepe (2023020206472456000_btx383-B4) 2014; 4
Ahlgren (2023020206472456000_btx383-B1) 2016; 45
Edwards (2023020206472456000_btx383-B5) 2016; 40
Lehahn (2023020206472456000_btx383-B8) 2014; 24
Edwards (2023020206472456000_btx383-B6) 2005; 3
Paez-Espino (2023020206472456000_btx383-B9) 2016; 536
Brister (2023020206472456000_btx383-B3) 2015; 43(D1)
Smits (2023020206472456000_btx383-B10) 2014; 5
Villarroel (2023020206472456000_btx383-B12) 2016; 8
Kanehisa (2023020206472456000_btx383-B7) 2017; 45(D1)
Yarza (2023020206472456000_btx383-B13) 2014; 12
Suttle (2023020206472456000_btx383-B11) 2007; 5
References_xml – volume: 5
  start-page: 714.
  year: 2014
  ident: 2023020206472456000_btx383-B10
  article-title: Assembly of viral genomes from metagenomes
  publication-title: Front. Microbiol
  doi: 10.3389/fmicb.2014.00714
– volume: 45
  start-page: 39
  year: 2016
  ident: 2023020206472456000_btx383-B1
  article-title: Alignment-free d2* oligonucleotide frequency dissimilarity measure improves prediction of hosts from metagenomically-derived viral sequences
  publication-title: Nucleic Acids Res
  doi: 10.1093/nar/gkw1002
– volume: 536
  start-page: 425
  year: 2016
  ident: 2023020206472456000_btx383-B9
  article-title: Uncovering earth14.virome
  publication-title: Nature
  doi: 10.1038/nature19094
– volume: 3
  start-page: 504
  year: 2005
  ident: 2023020206472456000_btx383-B6
  article-title: Viral metagenomics
  publication-title: Nat. Rev. Microbiol
  doi: 10.1038/nrmicro1163
– volume: 4
  start-page: 39.
  year: 2014
  ident: 2023020206472456000_btx383-B4
  article-title: Bacteriophages: an underestimated role in human and animal health?
  publication-title: Front. Cell. Infect. Microbiol
  doi: 10.3389/fcimb.2014.00039
– volume: 43(D1)
  start-page: D571
  year: 2015
  ident: 2023020206472456000_btx383-B3
  article-title: Ncbi viral genomes resource
  publication-title: Nucleic Acids Res
  doi: 10.1093/nar/gku1207
– volume: 5
  start-page: 801
  year: 2007
  ident: 2023020206472456000_btx383-B11
  article-title: Marine viruses - major players in the global ecosystem
  publication-title: Nat. Rev. Microbiol
  doi: 10.1038/nrmicro1750
– volume: 24
  start-page: 2041
  year: 2014
  ident: 2023020206472456000_btx383-B8
  article-title: Decoupling physical from biological processes to assess the impact of viruses on a mesoscale algal bloom
  publication-title: Curr. Biol
  doi: 10.1016/j.cub.2014.07.046
– volume: 12
  start-page: 635
  year: 2014
  ident: 2023020206472456000_btx383-B13
  article-title: Uniting the classification of cultured and uncultured bacteria and archaea using 16s rrna gene sequences
  publication-title: Nat. Rev. Microbiol
  doi: 10.1038/nrmicro3330
– volume: 45(D1)
  start-page: D353
  year: 2017
  ident: 2023020206472456000_btx383-B7
  article-title: Kegg: new perspectives on genomes, pathways, diseases and drugs
  publication-title: Nucleic Acids Res
  doi: 10.1093/nar/gkw1092
– volume: 11
  start-page: 7
  year: 2016
  ident: 2023020206472456000_btx383-B2
  article-title: ivirus: facilitating new insights in viral ecology with software and community data sets imbedded in a cyberinfrastructure
  publication-title: ISME J
  doi: 10.1038/ismej.2016.89
– volume: 8
  start-page: 116.
  year: 2016
  ident: 2023020206472456000_btx383-B12
  article-title: Hostphinder: a phage host prediction tool
  publication-title: Viruses
  doi: 10.3390/v8050116
– volume: 40
  start-page: 258
  year: 2016
  ident: 2023020206472456000_btx383-B5
  article-title: Computational approaches to predict bacteriophage–host relationships
  publication-title: FEMS Microbiol. Rev
  doi: 10.1093/femsre/fuv048
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Snippet WIsH predicts prokaryotic hosts of phages from their genomic sequences. It achieves 63% mean accuracy when predicting the host genus among 20 genera for 3...
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SubjectTerms Applications Notes
Archaea - virology
Artificial Intelligence
Bacteria - virology
Bacteriology
Bacteriophages - genetics
Biodiversity and Ecology
Computer Science
Contig Mapping
Environmental Sciences
Genetics
Global Changes
Life Sciences
Machine Learning
Metagenomics - methods
Microbiology and Parasitology
Populations and Evolution
Protistology
Software
Title WIsH: who is the host? Predicting prokaryotic hosts from metagenomic phage contigs
URI https://www.ncbi.nlm.nih.gov/pubmed/28957499
https://www.proquest.com/docview/1945224166
https://hal.science/hal-02088265
https://pubmed.ncbi.nlm.nih.gov/PMC5870724
Volume 33
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