IBS: an illustrator for the presentation and visualization of biological sequences

Biological sequence diagrams are fundamental for visualizing various functional elements in protein or nucleotide sequences that enable a summarization and presentation of existing information as well as means of intuitive new discoveries. Here, we present a software package called illustrator of bi...

Ausführliche Beschreibung

Gespeichert in:

Bibliographische Detailangaben
Veröffentlicht in:	Bioinformatics Jg. 31; H. 20; S. 3359 - 3361
Hauptverfasser:	Liu, Wenzhong, Xie, Yubin, Ma, Jiyong, Luo, Xiaotong, Nie, Peng, Zuo, Zhixiang, Lahrmann, Urs, Zhao, Qi, Zheng, Yueyuan, Zhao, Yong, Xue, Yu, Ren, Jian
Format:	Journal Article
Sprache:	Englisch
Veröffentlicht:	England Oxford University Press 15.10.2015
Schlagworte:	Applications Notes Bioinformatics Biological Computational Biology - methods Computer Graphics Exports Gene Expression Profiling Genes Humans Java (programming language) Molecular Sequence Annotation - methods Nucleotides Online Packages Proteins Software
ISSN:	1367-4803, 1367-4811, 1367-4811, 1460-2059
Online-Zugang:	Volltext
Tags:	Tag hinzufügen Keine Tags, Fügen Sie den ersten Tag hinzu!

Abstract	Biological sequence diagrams are fundamental for visualizing various functional elements in protein or nucleotide sequences that enable a summarization and presentation of existing information as well as means of intuitive new discoveries. Here, we present a software package called illustrator of biological sequences (IBS) that can be used for representing the organization of either protein or nucleotide sequences in a convenient, efficient and precise manner. Multiple options are provided in IBS, and biological sequences can be manipulated, recolored or rescaled in a user-defined mode. Also, the final representational artwork can be directly exported into a publication-quality figure. Availability and implementation: The standalone package of IBS was implemented in JAVA, while the online service was implemented in HTML5 and JavaScript. Both the standalone package and online service are freely available at http://ibs.biocuckoo.org. Contact: renjian.sysu@gmail.com or xueyu@hust.edu.cn Supplementary information: Supplementary data are available at Bioinformatics online.
AbstractList	Biological sequence diagrams are fundamental for visualizing various functional elements in protein or nucleotide sequences that enable a summarization and presentation of existing information as well as means of intuitive new discoveries. Here, we present a software package called illustrator of biological sequences (IBS) that can be used for representing the organization of either protein or nucleotide sequences in a convenient, efficient and precise manner. Multiple options are provided in IBS, and biological sequences can be manipulated, recolored or rescaled in a user-defined mode. Also, the final representational artwork can be directly exported into a publication-quality figure.Availability and implementation: The standalone package of IBS was implemented in JAVA, while the online service was implemented in HTML5 and JavaScript. Both the standalone package and online service are freely available at http://ibs.biocuckoo.org. Supplementary information: Supplementary data are available at Bioinformatics online. Biological sequence diagrams are fundamental for visualizing various functional elements in protein or nucleotide sequences that enable a summarization and presentation of existing information as well as means of intuitive new discoveries. Here, we present a software package called illustrator of biological sequences (IBS) that can be used for representing the organization of either protein or nucleotide sequences in a convenient, efficient and precise manner. Multiple options are provided in IBS, and biological sequences can be manipulated, recolored or rescaled in a user-defined mode. Also, the final representational artwork can be directly exported into a publication-quality figure.UNLABELLEDBiological sequence diagrams are fundamental for visualizing various functional elements in protein or nucleotide sequences that enable a summarization and presentation of existing information as well as means of intuitive new discoveries. Here, we present a software package called illustrator of biological sequences (IBS) that can be used for representing the organization of either protein or nucleotide sequences in a convenient, efficient and precise manner. Multiple options are provided in IBS, and biological sequences can be manipulated, recolored or rescaled in a user-defined mode. Also, the final representational artwork can be directly exported into a publication-quality figure.The standalone package of IBS was implemented in JAVA, while the online service was implemented in HTML5 and JavaScript. Both the standalone package and online service are freely available at http://ibs.biocuckoo.org.AVAILABILITY AND IMPLEMENTATIONThe standalone package of IBS was implemented in JAVA, while the online service was implemented in HTML5 and JavaScript. Both the standalone package and online service are freely available at http://ibs.biocuckoo.org.renjian.sysu@gmail.com or xueyu@hust.edu.cnCONTACTrenjian.sysu@gmail.com or xueyu@hust.edu.cnSupplementary data are available at Bioinformatics online.SUPPLEMENTARY INFORMATIONSupplementary data are available at Bioinformatics online. Biological sequence diagrams are fundamental for visualizing various functional elements in protein or nucleotide sequences that enable a summarization and presentation of existing information as well as means of intuitive new discoveries. Here, we present a software package called illustrator of biological sequences (IBS) that can be used for representing the organization of either protein or nucleotide sequences in a convenient, efficient and precise manner. Multiple options are provided in IBS, and biological sequences can be manipulated, recolored or rescaled in a user-defined mode. Also, the final representational artwork can be directly exported into a publication-quality figure. Availability and implementation: The standalone package of IBS was implemented in JAVA, while the online service was implemented in HTML5 and JavaScript. Both the standalone package and online service are freely available at http://ibs.biocuckoo.org. Contact: renjian.sysu@gmail.com or xueyu@hust.edu.cn Supplementary information: Supplementary data are available at Bioinformatics online. Biological sequence diagrams are fundamental for visualizing various functional elements in protein or nucleotide sequences that enable a summarization and presentation of existing information as well as means of intuitive new discoveries. Here, we present a software package called illustrator of biological sequences (IBS) that can be used for representing the organization of either protein or nucleotide sequences in a convenient, efficient and precise manner. Multiple options are provided in IBS, and biological sequences can be manipulated, recolored or rescaled in a user-defined mode. Also, the final representational artwork can be directly exported into a publication-quality figure. Availability and implementation: The standalone package of IBS was implemented in JAVA, while the online service was implemented in HTML5 and JavaScript. Both the standalone package and online service are freely available at http://ibs.biocuckoo.org. Contact: renjian.sysu@gmail.com or xueyu@hust.edu.cn Supplementary information: Supplementary data are available at Bioinformatics online. Biological sequence diagrams are fundamental for visualizing various functional elements in protein or nucleotide sequences that enable a summarization and presentation of existing information as well as means of intuitive new discoveries. Here, we present a software package called illustrator of biological sequences (IBS) that can be used for representing the organization of either protein or nucleotide sequences in a convenient, efficient and precise manner. Multiple options are provided in IBS, and biological sequences can be manipulated, recolored or rescaled in a user-defined mode. Also, the final representational artwork can be directly exported into a publication-quality figure. The standalone package of IBS was implemented in JAVA, while the online service was implemented in HTML5 and JavaScript. Both the standalone package and online service are freely available at http://ibs.biocuckoo.org. renjian.sysu@gmail.com or xueyu@hust.edu.cn Supplementary data are available at Bioinformatics online.
Author	Zhao, Qi Ren, Jian Ma, Jiyong Xie, Yubin Zheng, Yueyuan Nie, Peng Zuo, Zhixiang Luo, Xiaotong Xue, Yu Liu, Wenzhong Lahrmann, Urs Zhao, Yong
Author_xml	– sequence: 1 givenname: Wenzhong surname: Liu fullname: Liu, Wenzhong – sequence: 2 givenname: Yubin surname: Xie fullname: Xie, Yubin – sequence: 3 givenname: Jiyong surname: Ma fullname: Ma, Jiyong – sequence: 4 givenname: Xiaotong surname: Luo fullname: Luo, Xiaotong – sequence: 5 givenname: Peng surname: Nie fullname: Nie, Peng – sequence: 6 givenname: Zhixiang surname: Zuo fullname: Zuo, Zhixiang – sequence: 7 givenname: Urs surname: Lahrmann fullname: Lahrmann, Urs – sequence: 8 givenname: Qi surname: Zhao fullname: Zhao, Qi – sequence: 9 givenname: Yueyuan surname: Zheng fullname: Zheng, Yueyuan – sequence: 10 givenname: Yong surname: Zhao fullname: Zhao, Yong – sequence: 11 givenname: Yu surname: Xue fullname: Xue, Yu – sequence: 12 givenname: Jian surname: Ren fullname: Ren, Jian
BackLink	https://www.ncbi.nlm.nih.gov/pubmed/26069263$$D View this record in MEDLINE/PubMed
BookMark	eNqNkl9PHCEUxYmxUdf2I2jm0ZdV4A4w1MREN2pNTJr0zzNhGWaXhoUVZjZpP71sRje1L_UJAr977oF7Jmg_xGAROiH4nGAJF3MXXehiWunemXwx7zfA6R46IsDFtG4I2d_tMRyiSc6_MMYMM36ADinHXFIOR-jbw833z5UOlfN-yH3SfUxVka36pa3WyWYb-tIhhsK01cblQXv3ZzyJXVVc-LhwRvsq26fBBmPzR_Sh0z7bTy_rMfp5d_tj9mX6-PX-YXb9ODWshn5qukYaLaWgVMoGpDXQcm46CwJaISQzkkPd6pYJTueMyg5aZknHaixrQy0co6tRdz3MV7Y1xWnSXq2TW-n0W0Xt1Nub4JZqETeqZpI1UhSBsxeBFIv33KuVy8Z6r4ONQ1ZECAwcJGfvQIFJIjBp3oFSAnXDyVb19O8X7Ky_jqcAbARMijkn2-0QgtU2BuptDNQYg1J3-U-dceMYy0c4_5_qZ-27wcY
CitedBy_id	crossref_primary_10_3389_fpls_2019_01590 crossref_primary_10_3390_v10070367 crossref_primary_10_1007_s00427_020_00659_4 crossref_primary_10_1093_nar_gkab615 crossref_primary_10_7554_eLife_29985 crossref_primary_10_1371_journal_ppat_1010345 crossref_primary_10_1093_plphys_kiad153 crossref_primary_10_3390_biology13010024 crossref_primary_10_3390_ani13030362 crossref_primary_10_1038_s41438_021_00587_y crossref_primary_10_1111_imcb_12158 crossref_primary_10_1093_hr_uhae052 crossref_primary_10_1186_s12870_018_1608_7 crossref_primary_10_1371_journal_pone_0154237 crossref_primary_10_3390_plants12213706 crossref_primary_10_1371_journal_pone_0200357 crossref_primary_10_1016_j_cbd_2025_101632 crossref_primary_10_1016_j_gene_2023_147259 crossref_primary_10_1093_plphys_kiae350 crossref_primary_10_1093_nar_gkaa899 crossref_primary_10_1186_s12870_023_04075_4 crossref_primary_10_1016_j_ijbiomac_2024_129745 crossref_primary_10_7554_eLife_74322 crossref_primary_10_1186_s43897_023_00063_2 crossref_primary_10_3390_ijms222111721 crossref_primary_10_1038_s41598_018_23846_w crossref_primary_10_1016_j_tips_2016_06_003 crossref_primary_10_1007_s00294_018_0851_7 crossref_primary_10_1016_j_heliyon_2023_e23272 crossref_primary_10_1016_j_ijbiomac_2019_01_090 crossref_primary_10_1038_s41598_018_25008_4 crossref_primary_10_3390_genes14030662 crossref_primary_10_1080_07391102_2024_2435056 crossref_primary_10_1111_cmi_13341 crossref_primary_10_1111_tpj_14351 crossref_primary_10_1007_s11011_022_01024_2 crossref_primary_10_1371_journal_pone_0274716 crossref_primary_10_3389_fmicb_2022_849084 crossref_primary_10_1089_thy_2016_0101 crossref_primary_10_1113_JP278006 crossref_primary_10_1007_s00294_022_01249_9 crossref_primary_10_1093_jxb_erac514 crossref_primary_10_1093_pcp_pcae127 crossref_primary_10_3389_fcell_2020_562940 crossref_primary_10_1534_genetics_118_300731 crossref_primary_10_1111_pbr_12739 crossref_primary_10_1016_j_enzmictec_2020_109698 crossref_primary_10_3390_cancers13112513 crossref_primary_10_7554_eLife_84492 crossref_primary_10_1038_s41598_023_33226_8 crossref_primary_10_3389_fpls_2018_01836 crossref_primary_10_1007_s00253_022_12167_8 crossref_primary_10_1073_pnas_2219029120 crossref_primary_10_1128_jvi_00268_23 crossref_primary_10_1242_jcs_260337 crossref_primary_10_1101_gr_278796_123 crossref_primary_10_1038_s41598_019_41936_1 crossref_primary_10_1080_17460913_2024_2389750 crossref_primary_10_1111_jop_13613 crossref_primary_10_3390_ijms241511992 crossref_primary_10_1007_s13258_018_0775_0 crossref_primary_10_3390_ijms19041216 crossref_primary_10_1111_jnc_14918 crossref_primary_10_3390_insects14070580 crossref_primary_10_1016_j_ajhg_2016_08_018 crossref_primary_10_1038_s41467_018_04557_2 crossref_primary_10_1080_09168451_2020_1771539 crossref_primary_10_1242_jcs_221390 crossref_primary_10_1007_s00438_025_02240_y crossref_primary_10_1007_s11240_020_01896_1 crossref_primary_10_1016_j_plantsci_2022_111541 crossref_primary_10_1111_cge_13894 crossref_primary_10_3389_fgene_2022_824049 crossref_primary_10_1111_1744_7917_13432 crossref_primary_10_1093_plphys_kiac278 crossref_primary_10_1093_hmg_ddad171 crossref_primary_10_1002_mgg3_2175 crossref_primary_10_1101_gr_278264_123 crossref_primary_10_1016_j_ijbiomac_2020_11_009 crossref_primary_10_1128_iai_00085_23 crossref_primary_10_3390_vaccines11020304 crossref_primary_10_3389_fgene_2022_916672 crossref_primary_10_3389_fmars_2022_817868 crossref_primary_10_1016_j_pestbp_2018_11_017 crossref_primary_10_1007_s12035_020_01981_8 crossref_primary_10_1186_s12967_018_1466_y crossref_primary_10_1016_j_micpath_2021_104879 crossref_primary_10_1007_s10142_022_00828_w crossref_primary_10_1038_srep34595 crossref_primary_10_1007_s12298_021_01025_y crossref_primary_10_1073_pnas_2322974121 crossref_primary_10_1186_s12866_024_03262_z crossref_primary_10_1007_s00424_016_1896_4 crossref_primary_10_1186_s40694_021_00121_8 crossref_primary_10_3389_fpls_2020_00245 crossref_primary_10_1016_j_jip_2020_107498 crossref_primary_10_3389_fmicb_2022_1051013 crossref_primary_10_1186_s12864_020_6618_9 crossref_primary_10_3389_fmicb_2021_730045 crossref_primary_10_1016_j_virusres_2020_198003 crossref_primary_10_3389_fphys_2021_633301 crossref_primary_10_3390_ijms222011075 crossref_primary_10_3390_pathogens12010113 crossref_primary_10_1094_MPMI_03_19_0079_R crossref_primary_10_1371_journal_pone_0248318 crossref_primary_10_1002_acn3_51679 crossref_primary_10_1186_s12864_018_5151_6 crossref_primary_10_3389_fmicb_2018_02927 crossref_primary_10_1002_smll_202205531 crossref_primary_10_1128_msystems_00196_20 crossref_primary_10_3390_ani11020584 crossref_primary_10_3390_antiox12061150 crossref_primary_10_3390_ijms252111342 crossref_primary_10_1186_s12967_023_03877_2 crossref_primary_10_3390_cells12131704 crossref_primary_10_1007_s42995_022_00151_0 crossref_primary_10_3389_fnagi_2023_1114022 crossref_primary_10_3389_fcimb_2024_1327780 crossref_primary_10_1016_j_plaphy_2019_06_006 crossref_primary_10_1016_j_ejmg_2020_104085 crossref_primary_10_1111_mpp_12803 crossref_primary_10_3390_ijms23169282 crossref_primary_10_3390_ijms231810431 crossref_primary_10_1139_bcb_2017_0322 crossref_primary_10_1111_cge_13874 crossref_primary_10_1016_j_virol_2022_08_013 crossref_primary_10_1038_s41598_023_30827_1 crossref_primary_10_1186_s12862_018_1288_9 crossref_primary_10_1038_s41467_024_51512_5 crossref_primary_10_1109_TCBB_2017_2665542 crossref_primary_10_1016_j_fsi_2018_02_029 crossref_primary_10_1007_s00299_023_03030_9 crossref_primary_10_1016_j_gene_2019_01_008 crossref_primary_10_1016_j_mimet_2017_11_008 crossref_primary_10_1093_bib_bbaa386 crossref_primary_10_3390_ijms222413294 crossref_primary_10_1093_hmg_ddx377 crossref_primary_10_1016_j_ebiom_2021_103309 crossref_primary_10_1111_nph_15182 crossref_primary_10_1038_s41598_020_78018_6 crossref_primary_10_1038_s41467_021_23686_9 crossref_primary_10_1094_MPMI_35_3 crossref_primary_10_3389_fnmol_2022_901682 crossref_primary_10_1007_s00277_022_04773_3 crossref_primary_10_1007_s11738_025_03792_7 crossref_primary_10_1016_j_str_2021_01_010 crossref_primary_10_1186_s12902_023_01388_1 crossref_primary_10_1038_s41598_025_10551_8 crossref_primary_10_1371_journal_pone_0304842 crossref_primary_10_1016_j_cbd_2019_100626 crossref_primary_10_1016_j_jgar_2019_12_008 crossref_primary_10_1186_s12864_019_5968_7 crossref_primary_10_1016_j_dci_2020_103962 crossref_primary_10_1016_j_aquatox_2020_105464 crossref_primary_10_1080_13102818_2023_2238833 crossref_primary_10_1093_hmg_ddac276 crossref_primary_10_1128_spectrum_00150_22 crossref_primary_10_1126_science_aaf5316 crossref_primary_10_1139_cjps_2018_0156 crossref_primary_10_3390_ijms24129872 crossref_primary_10_1016_j_parkreldis_2021_01_014 crossref_primary_10_3390_microorganisms9112287 crossref_primary_10_1074_jbc_M116_740787 crossref_primary_10_1007_s11356_018_3516_7 crossref_primary_10_1007_s13562_025_00964_x crossref_primary_10_32604_biocell_2022_015784 crossref_primary_10_1182_bloodadvances_2022007725 crossref_primary_10_1371_journal_pone_0221180 crossref_primary_10_3390_agronomy13030936 crossref_primary_10_1186_s12862_017_1099_4 crossref_primary_10_1093_ee_nvy095 crossref_primary_10_26508_lsa_202301944 crossref_primary_10_3389_fpls_2016_01775 crossref_primary_10_1007_s00438_020_01685_7 crossref_primary_10_1038_s41598_022_18517_w crossref_primary_10_3389_fpls_2019_01058 crossref_primary_10_1016_j_gene_2017_07_034 crossref_primary_10_1128_msphere_00816_23 crossref_primary_10_3389_fpls_2020_00214 crossref_primary_10_1016_j_cbd_2019_01_008 crossref_primary_10_1136_jmg_2023_109288 crossref_primary_10_1080_15592324_2020_1780404 crossref_primary_10_1038_s41467_018_03511_6 crossref_primary_10_3389_fmolb_2020_626595 crossref_primary_10_3389_fimmu_2022_905628 crossref_primary_10_3390_v16020252 crossref_primary_10_1016_j_ijbiomac_2024_129913 crossref_primary_10_1016_j_meegid_2017_08_004 crossref_primary_10_1016_j_meegid_2017_08_002 crossref_primary_10_1016_j_plaphy_2024_109281 crossref_primary_10_1128_spectrum_02634_24 crossref_primary_10_1074_jbc_M117_799247 crossref_primary_10_1093_pcp_pcaf033 crossref_primary_10_1038_s41598_019_40949_0 crossref_primary_10_1016_j_tcsw_2019_100032 crossref_primary_10_1128_jb_00462_21 crossref_primary_10_1093_nar_gkae973 crossref_primary_10_3748_wjg_v22_i39_8684 crossref_primary_10_1002_ajmg_a_38722 crossref_primary_10_1007_s12298_020_00759_5 crossref_primary_10_1007_s11033_018_4212_x crossref_primary_10_1016_j_csbj_2020_11_024 crossref_primary_10_3389_fcell_2021_686894 crossref_primary_10_3390_horticulturae10040310 crossref_primary_10_1016_j_psj_2022_102449 crossref_primary_10_1242_dmm_049437 crossref_primary_10_1134_S1022795425700693 crossref_primary_10_3389_fmicb_2022_856106 crossref_primary_10_1128_AEM_01124_18 crossref_primary_10_1371_journal_pone_0192250 crossref_primary_10_1016_j_gene_2019_100024 crossref_primary_10_1016_j_fsi_2018_04_052 crossref_primary_10_1111_cge_12982 crossref_primary_10_3390_ijms26062526 crossref_primary_10_3390_insects13030282 crossref_primary_10_1007_s10126_024_10363_3 crossref_primary_10_1007_s10142_022_00932_x crossref_primary_10_3390_ijms22189802 crossref_primary_10_3390_ijms20061361 crossref_primary_10_1042_BSR20222230 crossref_primary_10_1002_ajmg_a_61518 crossref_primary_10_1016_j_molcel_2023_07_015 crossref_primary_10_1016_j_fsi_2018_03_034 crossref_primary_10_1038_srep32673 crossref_primary_10_1111_cge_12835 crossref_primary_10_1007_s00436_016_5371_0 crossref_primary_10_1111_cge_13927 crossref_primary_10_3390_ijms24098090 crossref_primary_10_1099_mgen_0_001045 crossref_primary_10_3389_fgene_2024_1435622 crossref_primary_10_1111_mpp_13116 crossref_primary_10_1016_j_jspr_2023_102096 crossref_primary_10_3390_pathogens9030232 crossref_primary_10_3390_molecules27207063 crossref_primary_10_3389_fvets_2022_833183 crossref_primary_10_3390_ijms24043193 crossref_primary_10_1007_s13562_017_0424_8 crossref_primary_10_1038_s41598_020_76725_8 crossref_primary_10_1007_s12298_022_01220_5 crossref_primary_10_1016_j_gene_2018_12_049 crossref_primary_10_3390_genes10060445 crossref_primary_10_3390_v12101068 crossref_primary_10_3390_genes10121004 crossref_primary_10_1016_j_psj_2023_102488 crossref_primary_10_1016_j_bbamcr_2024_119843 crossref_primary_10_1186_s12864_019_6389_3 crossref_primary_10_1016_j_plantsci_2016_02_012 crossref_primary_10_1016_j_gene_2022_146807 crossref_primary_10_1038_s41598_018_29086_2 crossref_primary_10_3389_fnins_2019_00604 crossref_primary_10_1002_arch_22052 crossref_primary_10_1186_s40168_023_01601_2 crossref_primary_10_1016_j_cbpa_2024_111664 crossref_primary_10_1038_srep41031 crossref_primary_10_1128_mbio_00216_25 crossref_primary_10_3390_ijms241814359 crossref_primary_10_3390_v15040909 crossref_primary_10_1002_ajmg_a_38630 crossref_primary_10_1002_ps_6232 crossref_primary_10_1007_s10750_018_3521_3 crossref_primary_10_1016_j_compbiomed_2025_110144 crossref_primary_10_1038_s41598_019_44494_8 crossref_primary_10_1016_j_cub_2019_05_038 crossref_primary_10_3390_biology11040539 crossref_primary_10_1186_s12864_017_4054_2 crossref_primary_10_3390_biology12081059 crossref_primary_10_3389_fnins_2022_1006594 crossref_primary_10_3389_fmicb_2021_682306 crossref_primary_10_1002_2211_5463_12832 crossref_primary_10_3390_plants8120591 crossref_primary_10_1139_gen_2024_0089 crossref_primary_10_1007_s13762_023_04940_7 crossref_primary_10_3389_fgene_2021_737194 crossref_primary_10_1007_s00299_020_02595_z crossref_primary_10_1007_s00401_019_01963_8 crossref_primary_10_1016_j_jia_2023_12_036 crossref_primary_10_1007_s00705_022_05394_x crossref_primary_10_3897_imafungus_16_147558 crossref_primary_10_1111_cge_13918 crossref_primary_10_1038_s41477_022_01282_z crossref_primary_10_1002_pro_4282 crossref_primary_10_1016_j_ecoenv_2017_11_017 crossref_primary_10_1107_S2059798320010207 crossref_primary_10_1111_1755_0998_70009 crossref_primary_10_1007_s10126_025_10417_0 crossref_primary_10_1016_j_ygeno_2020_05_010 crossref_primary_10_1007_s11240_024_02959_3 crossref_primary_10_7717_peerj_10646 crossref_primary_10_1002_prot_25981 crossref_primary_10_1007_s12026_021_09224_1 crossref_primary_10_1016_j_molliq_2021_116586 crossref_primary_10_3389_fmars_2022_821603 crossref_primary_10_1016_j_sajb_2024_07_029 crossref_primary_10_3389_fgene_2022_938639 crossref_primary_10_3390_md22060287 crossref_primary_10_1093_nar_gkac120 crossref_primary_10_1016_j_gene_2024_148558 crossref_primary_10_1186_s12862_021_01774_0 crossref_primary_10_1042_BCJ20200145 crossref_primary_10_1186_s13071_020_04050_0 crossref_primary_10_3389_fmicb_2018_01309 crossref_primary_10_3389_fpls_2019_01332 crossref_primary_10_1038_s41598_017_05974_x crossref_primary_10_3390_ijms25189836 crossref_primary_10_1038_s41598_020_72769_y crossref_primary_10_3389_fmars_2020_604878 crossref_primary_10_1186_s12864_025_11609_7 crossref_primary_10_3390_biom12111566 crossref_primary_10_3390_genes11121435 crossref_primary_10_1186_s12864_024_11115_2 crossref_primary_10_3390_insects11010029 crossref_primary_10_1074_jbc_RA117_000849 crossref_primary_10_7717_peerj_8539 crossref_primary_10_3390_ijms26083853 crossref_primary_10_1080_15384101_2016_1183845 crossref_primary_10_1186_s13023_025_03540_7 crossref_primary_10_3389_fpls_2023_1175552 crossref_primary_10_1016_S2095_3119_20_63465_7 crossref_primary_10_1007_s11816_022_00752_2 crossref_primary_10_1038_srep34309 crossref_primary_10_3389_fimmu_2025_1529654 crossref_primary_10_1016_j_ijbiomac_2020_02_038 crossref_primary_10_1186_s12964_024_01566_1 crossref_primary_10_1007_s10930_018_9804_8 crossref_primary_10_1111_mpp_70017 crossref_primary_10_1111_tpj_13719 crossref_primary_10_3389_fimmu_2018_02525 crossref_primary_10_3390_plants13010008 crossref_primary_10_1016_j_ygeno_2021_12_003 crossref_primary_10_3389_fcell_2024_1394531 crossref_primary_10_3390_genes13050760 crossref_primary_10_1016_j_mce_2016_02_013 crossref_primary_10_1186_s13148_019_0784_0 crossref_primary_10_1186_s12864_021_07906_6 crossref_primary_10_3390_genes12081139 crossref_primary_10_1002_jbmr_3348 crossref_primary_10_1007_s00294_022_01250_2 crossref_primary_10_1080_01652176_2024_2318198 crossref_primary_10_1186_s12864_021_08022_1 crossref_primary_10_1016_j_heares_2021_108329 crossref_primary_10_1007_s42770_024_01379_x crossref_primary_10_1038_s41467_025_62932_2 crossref_primary_10_1093_bib_bbaa408 crossref_primary_10_1186_s13007_019_0428_6 crossref_primary_10_1016_j_bbamcr_2017_09_013 crossref_primary_10_1093_jas_skz096 crossref_primary_10_1038_s41467_020_15440_4 crossref_primary_10_1073_pnas_2416282122 crossref_primary_10_3390_plants14182862 crossref_primary_10_3389_fendo_2023_1232569 crossref_primary_10_3389_fpls_2017_01842 crossref_primary_10_1007_s00705_022_05428_4 crossref_primary_10_12688_f1000research_14541_1 crossref_primary_10_3389_fcimb_2022_880813 crossref_primary_10_1038_s41467_020_15112_3 crossref_primary_10_1016_j_ibmb_2021_103565 crossref_primary_10_3389_fcell_2021_676214 crossref_primary_10_1038_s41467_018_08242_2 crossref_primary_10_1186_s12864_022_08926_6 crossref_primary_10_1016_j_ccell_2023_06_010 crossref_primary_10_1155_2021_4045819 crossref_primary_10_1186_s12864_016_3214_0 crossref_primary_10_1016_j_cbpc_2021_109118 crossref_primary_10_1111_1462_2920_14522 crossref_primary_10_1111_imb_12963 crossref_primary_10_1186_s12864_022_08894_x crossref_primary_10_1042_BCJ20200675 crossref_primary_10_3389_fmolb_2022_794715 crossref_primary_10_7554_eLife_57640 crossref_primary_10_1007_s00705_023_05872_w crossref_primary_10_1016_j_hal_2024_102655 crossref_primary_10_1016_j_ijbiomac_2018_08_125 crossref_primary_10_1016_j_bbagen_2018_06_017 crossref_primary_10_1002_ijc_33330 crossref_primary_10_1093_brain_awab018 crossref_primary_10_1111_febs_15833 crossref_primary_10_1186_s40168_024_01963_1 crossref_primary_10_3389_fmicb_2018_02212 crossref_primary_10_3389_fmolb_2020_575077 crossref_primary_10_1096_fj_201900056RR crossref_primary_10_1016_j_ympev_2022_107554 crossref_primary_10_1186_s12870_021_03340_8 crossref_primary_10_1016_j_fm_2024_104710 crossref_primary_10_1016_j_scienta_2023_112622 crossref_primary_10_1016_j_jcv_2021_105056 crossref_primary_10_1139_cjm_2019_0129 crossref_primary_10_1016_j_cub_2021_01_010 crossref_primary_10_3389_fcimb_2025_1645525 crossref_primary_10_1007_s11240_021_02150_y crossref_primary_10_1038_s41598_021_86041_4 crossref_primary_10_1111_ppl_70043 crossref_primary_10_3389_fpls_2021_809666 crossref_primary_10_3390_genes14040931 crossref_primary_10_1016_j_ecoenv_2018_05_030 crossref_primary_10_1016_j_pmpp_2015_08_004 crossref_primary_10_3390_genes13020314 crossref_primary_10_3390_genes15121555 crossref_primary_10_1007_s12010_023_04806_1 crossref_primary_10_1016_j_plaphy_2020_07_006 crossref_primary_10_1094_MPMI_10_21_0254_R crossref_primary_10_1016_j_envexpbot_2025_106152 crossref_primary_10_1186_s12864_020_6503_6 crossref_primary_10_1016_j_pt_2020_01_009 crossref_primary_10_1371_journal_pgen_1006048 crossref_primary_10_1007_s11756_024_01718_1 crossref_primary_10_1093_infdis_jix515 crossref_primary_10_1016_j_cbd_2019_04_003 crossref_primary_10_1016_j_fsi_2019_07_054 crossref_primary_10_1002_pmic_201700292 crossref_primary_10_1007_s11356_017_0416_1 crossref_primary_10_1038_s41598_022_20750_2 crossref_primary_10_1093_nar_gkac373 crossref_primary_10_1038_s41375_019_0497_6 crossref_primary_10_1094_PHYTO_07_20_0281_R crossref_primary_10_1007_s00284_017_1218_x crossref_primary_10_1186_s40348_021_00116_w crossref_primary_10_3389_fpls_2024_1418762 crossref_primary_10_1093_jxb_erab094 crossref_primary_10_1007_s11033_019_05047_4 crossref_primary_10_1016_j_csbj_2020_08_022 crossref_primary_10_1074_jbc_M116_755660 crossref_primary_10_1016_j_ygcen_2019_113271 crossref_primary_10_1186_s42483_023_00175_z crossref_primary_10_1261_rna_058354_116 crossref_primary_10_1007_s00299_022_02864_z crossref_primary_10_1242_bio_052332 crossref_primary_10_1016_j_aquaculture_2022_738391 crossref_primary_10_1186_s12870_017_1063_x crossref_primary_10_1186_s12284_020_0372_0 crossref_primary_10_1186_s12915_021_01189_9 crossref_primary_10_1016_j_pmpp_2023_102121 crossref_primary_10_3390_jof8080878 crossref_primary_10_3389_fpls_2021_714066 crossref_primary_10_1016_j_pediatrneurol_2024_10_018 crossref_primary_10_3389_fmicb_2019_02906 crossref_primary_10_1093_femsle_fnab008 crossref_primary_10_1186_s12870_024_05052_1 crossref_primary_10_1038_s42003_019_0665_2 crossref_primary_10_1111_imb_12515 crossref_primary_10_3390_ijms231911993 crossref_primary_10_3389_fpls_2023_1116237 crossref_primary_10_3390_jof7060463 crossref_primary_10_1371_journal_ppat_1013011 crossref_primary_10_3389_fcell_2016_00112 crossref_primary_10_1007_s12038_022_00294_3 crossref_primary_10_1007_s11756_022_01026_6 crossref_primary_10_1111_ppl_14446 crossref_primary_10_1038_ncomms11733 crossref_primary_10_1007_s11738_018_2672_1 crossref_primary_10_1126_science_adk9067 crossref_primary_10_1186_s12862_021_01767_z crossref_primary_10_1007_s10126_024_10403_y crossref_primary_10_1016_j_lfs_2024_122691 crossref_primary_10_1007_s10126_022_10160_w crossref_primary_10_1016_j_ygeno_2019_02_015 crossref_primary_10_1111_nph_17942 crossref_primary_10_1128_mSystems_01211_20 crossref_primary_10_3389_fpls_2023_1193044 crossref_primary_10_1016_j_archoralbio_2018_07_015 crossref_primary_10_1016_j_canlet_2017_09_044 crossref_primary_10_1016_j_jia_2024_12_031 crossref_primary_10_1016_j_plaphy_2021_01_034 crossref_primary_10_3389_fmicb_2019_00618 crossref_primary_10_3389_fmicb_2020_595629 crossref_primary_10_1016_j_ajhg_2023_10_007 crossref_primary_10_1016_j_aspen_2021_10_010 crossref_primary_10_1016_j_ijbiomac_2023_127668 crossref_primary_10_1016_j_cbd_2022_101012 crossref_primary_10_1111_nph_15631 crossref_primary_10_3389_fendo_2018_00430 crossref_primary_10_3389_fendo_2018_00551 crossref_primary_10_1136_jmedgenet_2018_105262 crossref_primary_10_1186_s40478_021_01135_4 crossref_primary_10_2174_0113892037340497241024095749 crossref_primary_10_1038_srep39262 crossref_primary_10_3389_fmicb_2020_00879 crossref_primary_10_1007_s00441_018_2794_1 crossref_primary_10_1093_plphys_kiad509 crossref_primary_10_1371_journal_pone_0231323 crossref_primary_10_1186_s12885_017_3257_x crossref_primary_10_3390_genes12121919 crossref_primary_10_15252_embj_201798115 crossref_primary_10_3390_genes13122239 crossref_primary_10_3390_ani13121985 crossref_primary_10_1016_j_jgar_2025_06_003 crossref_primary_10_1002_jsfa_11453 crossref_primary_10_3233_JBR_210729 crossref_primary_10_3389_fmicb_2021_727202 crossref_primary_10_1002_tpg2_20090 crossref_primary_10_1007_s12298_024_01523_9 crossref_primary_10_1016_j_jhazmat_2020_123585 crossref_primary_10_26508_lsa_202201740 crossref_primary_10_1111_1744_7917_12935 crossref_primary_10_1155_2022_6115878 crossref_primary_10_3389_fgene_2022_997970 crossref_primary_10_3390_plants14172607 crossref_primary_10_1002_mgg3_2308 crossref_primary_10_1128_mSystems_00057_19 crossref_primary_10_1139_gen_2018_0163 crossref_primary_10_3390_cells11030400 crossref_primary_10_1139_gen_2017_0192 crossref_primary_10_1007_s10126_024_10296_x crossref_primary_10_1016_j_bcp_2023_115756 crossref_primary_10_3390_ijms23158190 crossref_primary_10_1111_pbi_14184 crossref_primary_10_3390_cimb46100649 crossref_primary_10_1016_j_gene_2018_05_077 crossref_primary_10_1042_BCJ20200891 crossref_primary_10_1016_j_canlet_2024_216936 crossref_primary_10_1016_j_molp_2021_08_007 crossref_primary_10_1186_s40478_019_0869_1 crossref_primary_10_1002_jcp_26870 crossref_primary_10_1007_s00438_018_1441_6 crossref_primary_10_2217_epi_2020_0414 crossref_primary_10_1093_jnen_nlaf007 crossref_primary_10_3390_biology13121038 crossref_primary_10_1016_j_jinsphys_2022_104380 crossref_primary_10_4137_BBI_S33716 crossref_primary_10_1098_rsob_200172 crossref_primary_10_1016_j_semcdb_2023_10_006 crossref_primary_10_1016_j_cbd_2020_100709 crossref_primary_10_7717_peerj_18073 crossref_primary_10_3390_biom11091390 crossref_primary_10_7554_eLife_82563 crossref_primary_10_1111_mmi_14717 crossref_primary_10_1038_s41598_023_30425_1 crossref_primary_10_1134_S1022795419070160 crossref_primary_10_3390_genes16020146 crossref_primary_10_3390_genes10010060 crossref_primary_10_1007_s00343_022_2129_7 crossref_primary_10_1038_s41598_020_69452_7 crossref_primary_10_1098_rsob_220366 crossref_primary_10_1186_s13148_016_0268_4 crossref_primary_10_1016_j_jfma_2024_07_021 crossref_primary_10_3390_ijms232214032 crossref_primary_10_7717_peerj_14306 crossref_primary_10_1111_imb_12678 crossref_primary_10_1590_0074_02760180098 crossref_primary_10_15252_embr_202050264 crossref_primary_10_1186_s10020_022_00583_5 crossref_primary_10_1038_s41598_018_37923_7 crossref_primary_10_1002_ajmg_b_32821 crossref_primary_10_1074_jbc_RA119_009451 crossref_primary_10_7717_peerj_14783 crossref_primary_10_1007_s00203_022_02833_w crossref_primary_10_1016_j_pestbp_2023_105592 crossref_primary_10_1093_femsle_fnaf080 crossref_primary_10_1016_j_aaf_2021_07_002 crossref_primary_10_1016_j_vetmic_2020_108602 crossref_primary_10_1038_s41439_022_00200_1 crossref_primary_10_1128_mSphere_00743_21 crossref_primary_10_1016_j_envint_2019_105120 crossref_primary_10_1186_s12864_021_07596_0 crossref_primary_10_1016_j_gene_2022_147122 crossref_primary_10_1111_tbed_14503 crossref_primary_10_1021_acs_jafc_5c07437 crossref_primary_10_1093_plcell_koab253 crossref_primary_10_1038_s41598_018_26532_z crossref_primary_10_1038_s41598_024_75220_8 crossref_primary_10_1016_j_addr_2020_12_010 crossref_primary_10_3390_ijms23137129 crossref_primary_10_1016_j_cbd_2022_101055 crossref_primary_10_1002_pro_3558 crossref_primary_10_1093_molbev_msab347 crossref_primary_10_3389_fgene_2021_794766 crossref_primary_10_3389_fmicb_2022_817891 crossref_primary_10_1016_j_dci_2017_07_021 crossref_primary_10_15252_emmm_201606623 crossref_primary_10_1016_j_imu_2020_100342 crossref_primary_10_1097_PAS_0000000000000862 crossref_primary_10_1186_s12870_020_02406_3 crossref_primary_10_1016_j_jinsphys_2025_104861 crossref_primary_10_1038_s41431_025_01884_z crossref_primary_10_1128_spectrum_01733_24 crossref_primary_10_3390_ijms22020650 crossref_primary_10_1016_j_dci_2021_104172 crossref_primary_10_1186_s12864_023_09759_7 crossref_primary_10_3389_fmicb_2022_874908 crossref_primary_10_3389_fmicb_2018_03029 crossref_primary_10_1186_s12864_018_4564_6 crossref_primary_10_1080_21501203_2025_2522081 crossref_primary_10_1590_0001_3765202420240321 crossref_primary_10_1098_rsob_220103 crossref_primary_10_1016_j_dci_2017_11_020 crossref_primary_10_1093_molbev_msab015 crossref_primary_10_3390_ijms21145018 crossref_primary_10_1186_s12915_022_01387_z crossref_primary_10_2147_IJGM_S398351 crossref_primary_10_1007_s12601_019_0029_3 crossref_primary_10_1186_s13098_024_01387_9 crossref_primary_10_1016_j_cbd_2020_100759 crossref_primary_10_1039_C6CP02355J crossref_primary_10_3390_microorganisms9050883 crossref_primary_10_1038_srep38658 crossref_primary_10_1111_mmi_15299 crossref_primary_10_3390_plants11121589 crossref_primary_10_3390_toxins12040271 crossref_primary_10_1128_spectrum_01434_23 crossref_primary_10_1177_03000605231221361 crossref_primary_10_3390_ijms21041251 crossref_primary_10_3390_ijms23031670 crossref_primary_10_1038_s41598_023_44603_8 crossref_primary_10_1083_jcb_202407190 crossref_primary_10_1186_s12964_020_00626_6 crossref_primary_10_1016_j_gene_2019_05_056 crossref_primary_10_1038_s41586_018_0086_2 crossref_primary_10_1093_molbev_msab121 crossref_primary_10_1007_s00253_021_11437_1 crossref_primary_10_1161_CIRCGEN_123_004221 crossref_primary_10_3389_fpls_2023_1109031 crossref_primary_10_1016_j_ecoenv_2018_09_122 crossref_primary_10_1186_s43141_022_00415_3 crossref_primary_10_1016_j_hpj_2023_05_001 crossref_primary_10_1111_bjd_15441 crossref_primary_10_3390_ijms22126345 crossref_primary_10_1016_j_micres_2017_12_012 crossref_primary_10_3390_cells9112471 crossref_primary_10_1155_2023_9819005 crossref_primary_10_3389_fmicb_2020_560474 crossref_primary_10_1002_cbf_3589 crossref_primary_10_1002_humu_24483 crossref_primary_10_1002_arch_21736 crossref_primary_10_1038_srep38318 crossref_primary_10_1111_pcn_13767 crossref_primary_10_1038_s41379_020_0592_2 crossref_primary_10_1038_s41418_020_00722_7 crossref_primary_10_1016_j_aqrep_2022_101016 crossref_primary_10_3390_ijms25010405 crossref_primary_10_1016_j_ibmb_2020_103486 crossref_primary_10_1093_plphys_kiad478 crossref_primary_10_1016_j_gpb_2018_04_007 crossref_primary_10_1016_j_plgene_2019_100197 crossref_primary_10_1186_s12864_022_08334_w crossref_primary_10_1126_science_abg2804 crossref_primary_10_1186_s12284_021_00459_y crossref_primary_10_7717_peerj_4875 crossref_primary_10_1093_nar_gkab822 crossref_primary_10_1139_gen_2025_0004 crossref_primary_10_3390_plants14182935 crossref_primary_10_1016_j_dci_2022_104476 crossref_primary_10_1016_j_pestbp_2023_105417 crossref_primary_10_1080_07391102_2022_2090439 crossref_primary_10_1002_arch_21626 crossref_primary_10_1016_j_scienta_2023_112196 crossref_primary_10_1007_s10126_024_10359_z crossref_primary_10_1111_cge_14208 crossref_primary_10_3389_fmicb_2025_1546925 crossref_primary_10_3390_agronomy14092058 crossref_primary_10_1016_j_fsi_2018_07_006 crossref_primary_10_1016_j_cbpb_2025_111102 crossref_primary_10_1007_s10340_024_01839_1 crossref_primary_10_7554_eLife_30789 crossref_primary_10_1007_s11032_020_01193_x crossref_primary_10_3390_biom11070993 crossref_primary_10_1002_cnr2_1291 crossref_primary_10_1016_j_mgene_2016_07_012 crossref_primary_10_3390_ijms25031449 crossref_primary_10_1093_carcin_bgad073 crossref_primary_10_1002_pro_3983 crossref_primary_10_1016_j_cell_2018_06_006 crossref_primary_10_3389_fpls_2025_1580003 crossref_primary_10_1016_j_ygeno_2021_02_010 crossref_primary_10_26508_lsa_202101226 crossref_primary_10_3389_fpls_2022_1053524 crossref_primary_10_1016_j_ijbiomac_2023_123949 crossref_primary_10_1128_jvi_00813_22 crossref_primary_10_1002_bies_201600046 crossref_primary_10_1016_j_ijbiomac_2018_10_142 crossref_primary_10_1080_09537104_2021_1925102 crossref_primary_10_1016_j_plaphy_2020_06_032 crossref_primary_10_1038_s41598_019_40044_4 crossref_primary_10_1002_tpg2_20246 crossref_primary_10_1186_s12864_019_5684_3 crossref_primary_10_4155_fmc_2018_0315 crossref_primary_10_1016_j_ygcen_2020_113556 crossref_primary_10_1038_s41598_022_11508_x crossref_primary_10_1212_WNL_0000000000004152 crossref_primary_10_1007_s10126_024_10336_6 crossref_primary_10_1042_BST20160113 crossref_primary_10_1111_eva_12997 crossref_primary_10_1080_14620316_2018_1504631 crossref_primary_10_1091_mbc_E22_01_0027 crossref_primary_10_1016_j_phrs_2025_107691 crossref_primary_10_1016_j_ibmb_2022_103862 crossref_primary_10_3389_fneur_2016_00159 crossref_primary_10_1002_arch_21841 crossref_primary_10_1038_srep42849 crossref_primary_10_3389_fpls_2021_802827 crossref_primary_10_1111_imb_12382 crossref_primary_10_3389_fphys_2018_00149 crossref_primary_10_1186_s12870_020_2250_8 crossref_primary_10_1038_srep40301 crossref_primary_10_3389_fgene_2022_955732 crossref_primary_10_3390_cells8101206 crossref_primary_10_3390_insects14040402 crossref_primary_10_3390_v13101893 crossref_primary_10_1007_s00253_020_10664_2 crossref_primary_10_1016_j_jinsphys_2018_04_007 crossref_primary_10_1371_journal_pone_0274751 crossref_primary_10_1016_j_ajhg_2016_09_005 crossref_primary_10_3389_fmicb_2022_790301 crossref_primary_10_1007_s00497_022_00447_2 crossref_primary_10_3389_fcimb_2017_00063
Cites_doi	10.1093/nar/gks1067 10.1038/cr.2009.6 10.1017/S1462399411001992 10.4161/nucl.21980
ContentType	Journal Article
Copyright	The Author 2015. Published by Oxford University Press. The Author 2015. Published by Oxford University Press. 2015
Copyright_xml	– notice: The Author 2015. Published by Oxford University Press. – notice: The Author 2015. Published by Oxford University Press. 2015
DBID	AAYXX CITATION CGR CUY CVF ECM EIF NPM 7X8 7QO 7TM 8FD FR3 P64 7SC JQ2 L7M L~C L~D 5PM
DOI	10.1093/bioinformatics/btv362
DatabaseName	CrossRef Medline MEDLINE MEDLINE (Ovid) MEDLINE MEDLINE PubMed MEDLINE - Academic Biotechnology Research Abstracts Nucleic Acids Abstracts Technology Research Database Engineering Research Database Biotechnology and BioEngineering Abstracts Computer and Information Systems Abstracts ProQuest Computer Science Collection Advanced Technologies Database with Aerospace Computer and Information Systems Abstracts Academic Computer and Information Systems Abstracts Professional PubMed Central (Full Participant titles)
DatabaseTitle	CrossRef MEDLINE Medline Complete MEDLINE with Full Text PubMed MEDLINE (Ovid) MEDLINE - Academic Engineering Research Database Biotechnology Research Abstracts Technology Research Database Nucleic Acids Abstracts Biotechnology and BioEngineering Abstracts Computer and Information Systems Abstracts Computer and Information Systems Abstracts – Academic Advanced Technologies Database with Aerospace ProQuest Computer Science Collection Computer and Information Systems Abstracts Professional
DatabaseTitleList	Engineering Research Database MEDLINE - Academic Computer and Information Systems Abstracts CrossRef MEDLINE
Database_xml	– sequence: 1 dbid: NPM name: PubMed url: http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed sourceTypes: Index Database – sequence: 2 dbid: 7X8 name: MEDLINE - Academic url: https://search.proquest.com/medline sourceTypes: Aggregation Database
DeliveryMethod	fulltext_linktorsrc
Discipline	Biology
EISSN	1367-4811 1460-2059
EndPage	3361
ExternalDocumentID	PMC4595897 26069263 10_1093_bioinformatics_btv362
Genre	Research Support, Non-U.S. Gov't Journal Article
GroupedDBID	--- -E4 -~X .2P .DC .I3 0R~ 1TH 23N 2WC 4.4 48X 53G 5GY 5WA 70D AAIJN AAIMJ AAJKP AAJQQ AAKPC AAMDB AAMVS AAOGV AAPQZ AAPXW AAUQX AAVAP AAVLN AAYXX ABEJV ABEUO ABGNP ABIXL ABNKS ABPQP ABPTD ABQLI ABWST ABXVV ABZBJ ACGFS ACIWK ACPRK ACUFI ACUXJ ACYTK ADBBV ADEYI ADEZT ADFTL ADGKP ADGZP ADHKW ADHZD ADMLS ADOCK ADPDF ADRDM ADRTK ADVEK ADYVW ADZTZ ADZXQ AECKG AEGPL AEJOX AEKKA AEKSI AELWJ AEMDU AENEX AENZO AEPUE AETBJ AEWNT AFFZL AFGWE AFIYH AFOFC AFRAH AGINJ AGKEF AGQXC AGSYK AHMBA AHXPO AIJHB AJEEA AJEUX AKHUL AKWXX ALMA_UNASSIGNED_HOLDINGS ALTZX ALUQC AMNDL APIBT APWMN ARIXL ASPBG AVWKF AXUDD AYOIW AZVOD BAWUL BAYMD BHONS BQDIO BQUQU BSWAC BTQHN C45 CDBKE CITATION CS3 CZ4 DAKXR DIK DILTD DU5 D~K EBD EBS EE~ EJD EMOBN F5P F9B FEDTE FHSFR FLIZI FLUFQ FOEOM FQBLK GAUVT GJXCC GROUPED_DOAJ GX1 H13 H5~ HAR HW0 HZ~ IOX J21 JXSIZ KAQDR KOP KQ8 KSI KSN M-Z MK~ ML0 N9A NGC NLBLG NMDNZ NOMLY NU- NVLIB O9- OAWHX ODMLO OJQWA OK1 OVD OVEED P2P PAFKI PEELM PQQKQ Q1. Q5Y R44 RD5 RNS ROL ROX RPM RUSNO RW1 RXO SV3 TEORI TJP TLC TOX TR2 W8F WOQ X7H YAYTL YKOAZ YXANX ZKX ~91 ~KM CGR CUY CVF ECM EIF NPM 7X8 482 7QO 7TM 8FD ABJNI FR3 P64 ROZ TN5 WH7 7SC JQ2 L7M L~C L~D 5PM
ID	FETCH-LOGICAL-c543t-cf89ca9972299839ec3d66cfe373d7795c9634dad5762b529f3d5e1f54094c2e3
ISICitedReferencesCount	782
ISICitedReferencesURI	http://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=Summon&SrcAuth=ProQuest&DestLinkType=CitingArticles&DestApp=WOS_CPL&KeyUT=000362846600019&url=https%3A%2F%2Fcvtisr.summon.serialssolutions.com%2F%23%21%2Fsearch%3Fho%3Df%26include.ft.matches%3Dt%26l%3Dnull%26q%3D
ISSN	1367-4803 1367-4811
IngestDate	Tue Sep 30 16:54:14 EDT 2025 Fri Sep 05 06:46:59 EDT 2025 Tue Oct 07 09:34:03 EDT 2025 Wed Oct 01 17:09:07 EDT 2025 Mon Jul 21 05:59:34 EDT 2025 Tue Nov 18 22:20:21 EST 2025 Sat Nov 29 05:34:01 EST 2025
IsDoiOpenAccess	true
IsOpenAccess	true
IsPeerReviewed	true
IsScholarly	true
Issue	20
Language	English
License	http://creativecommons.org/licenses/by-nc/4.0 The Author 2015. Published by Oxford University Press. This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com
LinkModel	OpenURL
MergedId	FETCHMERGED-LOGICAL-c543t-cf89ca9972299839ec3d66cfe373d7795c9634dad5762b529f3d5e1f54094c2e3
Notes	ObjectType-Article-1 SourceType-Scholarly Journals-1 ObjectType-Feature-2 content type line 23 The authors wish it to be known that, in their opinion, the first three authors should be regarded as Joint First Authors. Associate Editor: Alfonso Valencia
OpenAccessLink	https://pubmed.ncbi.nlm.nih.gov/PMC4595897
PMID	26069263
PQID	1721348615
PQPubID	23479
PageCount	3
ParticipantIDs	pubmedcentral_primary_oai_pubmedcentral_nih_gov_4595897 proquest_miscellaneous_1770363965 proquest_miscellaneous_1735917018 proquest_miscellaneous_1721348615 pubmed_primary_26069263 crossref_primary_10_1093_bioinformatics_btv362 crossref_citationtrail_10_1093_bioinformatics_btv362
PublicationCentury	2000
PublicationDate	2015-10-15
PublicationDateYYYYMMDD	2015-10-15
PublicationDate_xml	– month: 10 year: 2015 text: 2015-10-15 day: 15
PublicationDecade	2010
PublicationPlace	England
PublicationPlace_xml	– name: England
PublicationTitle	Bioinformatics
PublicationTitleAlternate	Bioinformatics
PublicationYear	2015
Publisher	Oxford University Press
Publisher_xml	– name: Oxford University Press
References	Flotho (2023020202331331600_btv362-B1) 2012; 3 Sigrist (2023020202331331600_btv362-B4) 2013; 41 Muller (2023020202331331600_btv362-B2) 2011; 13 Ren (2023020202331331600_btv362-B3) 2009; 19 22925898 - Nucleus. 2012 Sep-Oct;3(5):429-32 21933453 - Expert Rev Mol Med. 2011;13:e29 19153597 - Cell Res. 2009 Feb;19(2):271-3 23161676 - Nucleic Acids Res. 2013 Jan;41(Database issue):D344-7
References_xml	– volume: 41 start-page: D344 year: 2013 ident: 2023020202331331600_btv362-B4 article-title: New and continuing developments at PROSITE publication-title: Nucleic Acids Res. doi: 10.1093/nar/gks1067 – volume: 19 start-page: 271 year: 2009 ident: 2023020202331331600_btv362-B3 article-title: DOG 1.0: illustrator of protein domain structures publication-title: Cell Res. doi: 10.1038/cr.2009.6 – volume: 13 start-page: e29 year: 2011 ident: 2023020202331331600_btv362-B2 article-title: Bromodomains as therapeutic targets publication-title: Expert Rev. Mol. Med. doi: 10.1017/S1462399411001992 – volume: 3 start-page: 429 year: 2012 ident: 2023020202331331600_btv362-B1 article-title: The RanBP2/RanGAP1*SUMO1/Ubc9 complex: a multisubunit E3 ligase at the intersection of sumoylation and the RanGTPase cycle publication-title: Nucleus doi: 10.4161/nucl.21980 – reference: 22925898 - Nucleus. 2012 Sep-Oct;3(5):429-32 – reference: 21933453 - Expert Rev Mol Med. 2011;13:e29 – reference: 19153597 - Cell Res. 2009 Feb;19(2):271-3 – reference: 23161676 - Nucleic Acids Res. 2013 Jan;41(Database issue):D344-7
SSID	ssj0005056 ssj0051444
Score	2.6628041
Snippet	Biological sequence diagrams are fundamental for visualizing various functional elements in protein or nucleotide sequences that enable a summarization and...
SourceID	pubmedcentral proquest pubmed crossref
SourceType	Open Access Repository Aggregation Database Index Database Enrichment Source
StartPage	3359
SubjectTerms	Applications Notes Bioinformatics Biological Computational Biology - methods Computer Graphics Exports Gene Expression Profiling Genes Humans Java (programming language) Molecular Sequence Annotation - methods Nucleotides Online Packages Proteins Software
Title	IBS: an illustrator for the presentation and visualization of biological sequences
URI	https://www.ncbi.nlm.nih.gov/pubmed/26069263 https://www.proquest.com/docview/1721348615 https://www.proquest.com/docview/1735917018 https://www.proquest.com/docview/1770363965 https://pubmed.ncbi.nlm.nih.gov/PMC4595897
Volume	31
WOSCitedRecordID	wos000362846600019&url=https%3A%2F%2Fcvtisr.summon.serialssolutions.com%2F%23%21%2Fsearch%3Fho%3Df%26include.ft.matches%3Dt%26l%3Dnull%26q%3D
hasFullText	1
inHoldings	1
isFullTextHit
isPrint
journalDatabaseRights	– providerCode: PRVASL databaseName: Oxford Journals Open Access Collection customDbUrl: eissn: 1367-4811 dateEnd: 99991231 omitProxy: false ssIdentifier: ssj0005056 issn: 1367-4803 databaseCode: TOX dateStart: 19850101 isFulltext: true titleUrlDefault: https://academic.oup.com/journals/ providerName: Oxford University Press – providerCode: PRVASL databaseName: Oxford Journals Open Access Collection customDbUrl: eissn: 1367-4811 dateEnd: 20220930 omitProxy: false ssIdentifier: ssj0005056 issn: 1367-4803 databaseCode: TOX dateStart: 19850101 isFulltext: true titleUrlDefault: https://academic.oup.com/journals/ providerName: Oxford University Press
link	http://cvtisr.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwtV3db9MwELe6ARIviG_Kx2QkxAsKS-IkjnkDtAmk0iHoUHiKHMfRIlVJWZuq21_An835I2nC0BgP9CGqXCdxfb9czue73yH0gpM8on4oHU-6xAmyKHe4KyNHZCIqGAcjX1eJ-Dah02mcJOzzaPSzzYVZz2lVxZsNW_xXUUMbCFulzv6DuLuLQgN8B6HDEcQOxysJ_uO7rzqDuXpVzufakwHL6i6acLFNNzJhyOtyqfIqzzvT0dAymWzJNs56sPVb1pZtVTM8K7rSTRshb0uC9NwLk7LRYXyyOj-p7VsSmhOzLfK9ycoOnZ9M2G551us3abQrNyl5vWqbrY_C09ymJkvTqlWi2NVjq1blH9qsLrZvBIM53-1pVkIMc_gFlW_osLLBf1cNqzWxen5Asj09Sg-PJ5N0dpDMXi5-OKr-mNqnt8VYdtA1n4ZM6cfZUbINFnJ1HeBuzG0uGCP7wzvvm_sOrZwLS5ffI3B7Js3sNrpl1yL4rcHQHTSS1V10w1QnPbuHvgCS3mBe4R6OMAwBA45wH0fQJ8cDHOG6wFsc4Q5H99Hx4cHs_QfHluBwRBiQlSOKmAmukqvBbAFbWgp4tiNRSEJJTikLBSjwIOc5LFv9LPRZQfJQekWo3AbCl-QB2q3qSj5CWNDMl8zjNMrDAD6ZF7me4MLLspgTHo5R0E5ZKiw_vSqTMk9NnARJhzOdmpkeo9fdaQtD0PK3E5638khBlar9MV7JulmmyhtCghhs_Mv6AA5VDYP4sj6a1Y5FcJ2HRs7d0PzIjZgfkTGiAwR0HRTd-_CXqjzRtO9ByMKY0cdXGP8TdHP7GD5Fu6vTRj5D18V6VS5P99AOTeI9DfBfqsDUxw
linkProvider	Oxford University Press
openUrl	ctx_ver=Z39.88-2004&ctx_enc=info%3Aofi%2Fenc%3AUTF-8&rfr_id=info%3Asid%2Fsummon.serialssolutions.com&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Ajournal&rft.genre=article&rft.atitle=IBS%3A+an+illustrator+for+the+presentation+and+visualization+of+biological+sequences&rft.jtitle=Bioinformatics+%28Oxford%2C+England%29&rft.au=Liu%2C+Wenzhong&rft.au=Xie%2C+Yubin&rft.au=Ma%2C+Jiyong&rft.au=Luo%2C+Xiaotong&rft.date=2015-10-15&rft.issn=1367-4811&rft.eissn=1367-4811&rft.volume=31&rft.issue=20&rft.spage=3359&rft_id=info:doi/10.1093%2Fbioinformatics%2Fbtv362&rft.externalDBID=NO_FULL_TEXT
thumbnail_l	http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/lc.gif&issn=1367-4803&client=summon
thumbnail_m	http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/mc.gif&issn=1367-4803&client=summon
thumbnail_s	http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/sc.gif&issn=1367-4803&client=summon