The first phlebo‐like virus infecting plants: a case study on the adaptation of negative‐stranded RNA viruses to new hosts

Summary A novel negative‐stranded (ns) RNA virus associated with a severe citrus disease reported more than 80 years ago has been identified. Transmission electron microscopy showed that this novel virus, tentatively named citrus concave gum‐associated virus, is flexuous and non‐enveloped. Notwithst...

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Veröffentlicht in:	Molecular plant pathology Jg. 19; H. 5; S. 1075 - 1089
Hauptverfasser:	Navarro, Beatriz, Minutolo, Maria, De Stradis, Angelo, Palmisano, Francesco, Alioto, Daniela, Di Serio, Francesco
Format:	Journal Article
Sprache:	Englisch
Veröffentlicht:	England John Wiley & Sons, Inc 01.05.2018 John Wiley and Sons Inc
Schlagworte:	Adaptation Arthropods Biological evolution case studies certification Citrus citrus disease Citrus fruits concave gum Disease transmission DNA-directed RNA polymerase Electron microscopy Evolution genome Genomes Genomics hosts mammals Movement protein New genera new genus nsRNA virus nucleocapsid proteins Nucleocapsids Original Phlebovirus Phylogenetics Phylogeny plant diseases and disorders Plant viruses Ribonucleic acid RNA RNA viruses RNA-directed RNA polymerase Sanitation Transmission electron microscopy virus adaptation Viruses virus adaptation phylogeny concave gum citrus disease nsRNA virus
ISSN:	1464-6722, 1364-3703, 1364-3703
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Abstract	Summary A novel negative‐stranded (ns) RNA virus associated with a severe citrus disease reported more than 80 years ago has been identified. Transmission electron microscopy showed that this novel virus, tentatively named citrus concave gum‐associated virus, is flexuous and non‐enveloped. Notwithstanding, its two genomic RNAs share structural features with members of the genus Phlebovirus, which are enveloped arthropod‐transmitted viruses infecting mammals, and with a group of still unclassified phlebo‐like viruses mainly infecting arthropods. CCGaV genomic RNAs code for an RNA‐dependent RNA polymerase, a nucleocapsid protein and a putative movement protein showing structural and phylogenetic relationships with phlebo‐like viruses, phleboviruses and the unrelated ophioviruses, respectively, thus providing intriguing evidence of a modular genome evolution. Phylogenetic reconstructions identified an invertebrate‐restricted virus as the most likely ancestor of this virus, revealing that its adaptation to plants was independent from and possibly predated that of the other nsRNA plant viruses. These data are consistent with an evolutionary scenario in which trans‐kingdom adaptation occurred several times during the history of nsRNA viruses and followed different evolutionary pathways, in which genomic RNA segments were gained or lost. The need to create a new genus for this bipartite nsRNA virus and the impact of the rapid and specific detection methods developed here on citrus sanitation and certification are also discussed.
AbstractList	A novel negative‐stranded (ns) RNA virus associated with a severe citrus disease reported more than 80 years ago has been identified. Transmission electron microscopy showed that this novel virus, tentatively named citrus concave gum‐associated virus, is flexuous and non‐enveloped. Notwithstanding, its two genomic RNAs share structural features with members of the genus Phlebovirus, which are enveloped arthropod‐transmitted viruses infecting mammals, and with a group of still unclassified phlebo‐like viruses mainly infecting arthropods. CCGaV genomic RNAs code for an RNA‐dependent RNA polymerase, a nucleocapsid protein and a putative movement protein showing structural and phylogenetic relationships with phlebo‐like viruses, phleboviruses and the unrelated ophioviruses, respectively, thus providing intriguing evidence of a modular genome evolution. Phylogenetic reconstructions identified an invertebrate‐restricted virus as the most likely ancestor of this virus, revealing that its adaptation to plants was independent from and possibly predated that of the other nsRNA plant viruses. These data are consistent with an evolutionary scenario in which trans‐kingdom adaptation occurred several times during the history of nsRNA viruses and followed different evolutionary pathways, in which genomic RNA segments were gained or lost. The need to create a new genus for this bipartite nsRNA virus and the impact of the rapid and specific detection methods developed here on citrus sanitation and certification are also discussed. Summary A novel negative‐stranded (ns) RNA virus associated with a severe citrus disease reported more than 80 years ago has been identified. Transmission electron microscopy showed that this novel virus, tentatively named citrus concave gum‐associated virus, is flexuous and non‐enveloped. Notwithstanding, its two genomic RNAs share structural features with members of the genus Phlebovirus, which are enveloped arthropod‐transmitted viruses infecting mammals, and with a group of still unclassified phlebo‐like viruses mainly infecting arthropods. CCGaV genomic RNAs code for an RNA‐dependent RNA polymerase, a nucleocapsid protein and a putative movement protein showing structural and phylogenetic relationships with phlebo‐like viruses, phleboviruses and the unrelated ophioviruses, respectively, thus providing intriguing evidence of a modular genome evolution. Phylogenetic reconstructions identified an invertebrate‐restricted virus as the most likely ancestor of this virus, revealing that its adaptation to plants was independent from and possibly predated that of the other nsRNA plant viruses. These data are consistent with an evolutionary scenario in which trans‐kingdom adaptation occurred several times during the history of nsRNA viruses and followed different evolutionary pathways, in which genomic RNA segments were gained or lost. The need to create a new genus for this bipartite nsRNA virus and the impact of the rapid and specific detection methods developed here on citrus sanitation and certification are also discussed. A novel negative-stranded (ns) RNA virus associated with a severe citrus disease reported more than 80 years ago has been identified. Transmission electron microscopy showed that this novel virus, tentatively named citrus concave gum-associated virus, is flexuous and non-enveloped. Notwithstanding, its two genomic RNAs share structural features with members of the genus Phlebovirus, which are enveloped arthropod-transmitted viruses infecting mammals, and with a group of still unclassified phlebo-like viruses mainly infecting arthropods. CCGaV genomic RNAs code for an RNA-dependent RNA polymerase, a nucleocapsid protein and a putative movement protein showing structural and phylogenetic relationships with phlebo-like viruses, phleboviruses and the unrelated ophioviruses, respectively, thus providing intriguing evidence of a modular genome evolution. Phylogenetic reconstructions identified an invertebrate-restricted virus as the most likely ancestor of this virus, revealing that its adaptation to plants was independent from and possibly predated that of the other nsRNA plant viruses. These data are consistent with an evolutionary scenario in which trans-kingdom adaptation occurred several times during the history of nsRNA viruses and followed different evolutionary pathways, in which genomic RNA segments were gained or lost. The need to create a new genus for this bipartite nsRNA virus and the impact of the rapid and specific detection methods developed here on citrus sanitation and certification are also discussed.A novel negative-stranded (ns) RNA virus associated with a severe citrus disease reported more than 80 years ago has been identified. Transmission electron microscopy showed that this novel virus, tentatively named citrus concave gum-associated virus, is flexuous and non-enveloped. Notwithstanding, its two genomic RNAs share structural features with members of the genus Phlebovirus, which are enveloped arthropod-transmitted viruses infecting mammals, and with a group of still unclassified phlebo-like viruses mainly infecting arthropods. CCGaV genomic RNAs code for an RNA-dependent RNA polymerase, a nucleocapsid protein and a putative movement protein showing structural and phylogenetic relationships with phlebo-like viruses, phleboviruses and the unrelated ophioviruses, respectively, thus providing intriguing evidence of a modular genome evolution. Phylogenetic reconstructions identified an invertebrate-restricted virus as the most likely ancestor of this virus, revealing that its adaptation to plants was independent from and possibly predated that of the other nsRNA plant viruses. These data are consistent with an evolutionary scenario in which trans-kingdom adaptation occurred several times during the history of nsRNA viruses and followed different evolutionary pathways, in which genomic RNA segments were gained or lost. The need to create a new genus for this bipartite nsRNA virus and the impact of the rapid and specific detection methods developed here on citrus sanitation and certification are also discussed.
Author	Alioto, Daniela Di Serio, Francesco De Stradis, Angelo Palmisano, Francesco Navarro, Beatriz Minutolo, Maria
AuthorAffiliation	1 Istituto per la Protezione Sostenibile delle Piante Consiglio Nazionale delle Ricerche 70126 Bari Italy 2 Dipartimento di Agraria Università degli Studi di Napoli Federico II 80055 Portici Naples Italy 3 Centro di Ricerca Sperimentazione e Formazione in Agricoltura Basile Caramia 70010 Locorotondo Bari Italy
AuthorAffiliation_xml	– name: 1 Istituto per la Protezione Sostenibile delle Piante Consiglio Nazionale delle Ricerche 70126 Bari Italy – name: 2 Dipartimento di Agraria Università degli Studi di Napoli Federico II 80055 Portici Naples Italy – name: 3 Centro di Ricerca Sperimentazione e Formazione in Agricoltura Basile Caramia 70010 Locorotondo Bari Italy
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Snippet	Summary A novel negative‐stranded (ns) RNA virus associated with a severe citrus disease reported more than 80 years ago has been identified. Transmission... A novel negative‐stranded (ns) RNA virus associated with a severe citrus disease reported more than 80 years ago has been identified. Transmission electron... A novel negative-stranded (ns) RNA virus associated with a severe citrus disease reported more than 80 years ago has been identified. Transmission electron...
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SubjectTerms	Adaptation Arthropods Biological evolution case studies certification Citrus citrus disease Citrus fruits concave gum Disease transmission DNA-directed RNA polymerase Electron microscopy Evolution genome Genomes Genomics hosts mammals Movement protein New genera new genus nsRNA virus nucleocapsid proteins Nucleocapsids Original Phlebovirus Phylogenetics Phylogeny plant diseases and disorders Plant viruses Ribonucleic acid RNA RNA viruses RNA-directed RNA polymerase Sanitation Transmission electron microscopy virus adaptation Viruses
Title	The first phlebo‐like virus infecting plants: a case study on the adaptation of negative‐stranded RNA viruses to new hosts
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