DNA methylation signature of chronic low-grade inflammation and its role in cardio-respiratory diseases

We performed a multi-ethnic Epigenome Wide Association study on 22,774 individuals to describe the DNA methylation signature of chronic low-grade inflammation as measured by C-Reactive protein (CRP). We find 1,511 independent differentially methylated loci associated with CRP. These CpG sites show c...

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Published in:Nature communications Vol. 13; no. 1; pp. 2408 - 14
Main Authors: Wielscher, Matthias, Mandaviya, Pooja R., Kuehnel, Brigitte, Joehanes, Roby, Mustafa, Rima, Robinson, Oliver, Zhang, Yan, Bodinier, Barbara, Walton, Esther, Mishra, Pashupati P., Schlosser, Pascal, Wilson, Rory, Tsai, Pei-Chien, Palaniswamy, Saranya, Marioni, Riccardo E., Fiorito, Giovanni, Cugliari, Giovanni, Karhunen, Ville, Ghanbari, Mohsen, Psaty, Bruce M., Loh, Marie, Bis, Joshua C., Lehne, Benjamin, Sotoodehnia, Nona, Deary, Ian J., Chadeau-Hyam, Marc, Brody, Jennifer A., Cardona, Alexia, Selvin, Elizabeth, Smith, Alicia K., Miller, Andrew H., Torres, Mylin A., Marouli, Eirini, Gào, Xin, van Meurs, Joyce B. J., Graf-Schindler, Johanna, Rathmann, Wolfgang, Koenig, Wolfgang, Peters, Annette, Weninger, Wolfgang, Farlik, Matthias, Zhang, Tao, Chen, Wei, Xia, Yujing, Teumer, Alexander, Nauck, Matthias, Grabe, Hans J., Doerr, Macus, Lehtimäki, Terho, Guan, Weihua, Milani, Lili, Tanaka, Toshiko, Fisher, Krista, Waite, Lindsay L., Kasela, Silva, Vineis, Paolo, Verweij, Niek, van der Harst, Pim, Iacoviello, Licia, Sacerdote, Carlotta, Panico, Salvatore, Krogh, Vittorio, Tumino, Rosario, Tzala, Evangelia, Matullo, Giuseppe, Hurme, Mikko A., Raitakari, Olli T., Colicino, Elena, Baccarelli, Andrea A., Kähönen, Mika, Herzig, Karl-Heinz, Li, Shengxu, Conneely, Karen N., Kooner, Jaspal S., Köttgen, Anna, Heijmans, Bastiaan T., Deloukas, Panos, Relton, Caroline, Ong, Ken K., Bell, Jordana T., Boerwinkle, Eric, Elliott, Paul, Brenner, Hermann, Beekman, Marian, Levy, Daniel, Waldenberger, Melanie, Chambers, John C., Dehghan, Abbas, Järvelin, Marjo-Riitta
Format: Journal Article
Language:English
Published: London Nature Publishing Group UK 03.05.2022
Nature Publishing Group
Nature Portfolio
Subjects:
38
45/61
631/208/176/1988
692/163/2743/393
692/499
Binding sites
C-reactive protein
C-Reactive Protein - genetics
Chromosomes
Chronic obstructive pulmonary disease
CpG islands
CpG Islands - genetics
Deoxyribonucleic acid
DNA
DNA methylation
DNA Methylation - genetics
Euchromatin
Genomics
Health risks
Humanities and Social Sciences
Humans
Inflammation
Inflammation - genetics
Loci
multidisciplinary
Nucleotide Motifs
Proteins
Quality
Respiratory diseases
Science
Science (multidisciplinary)
ISSN:2041-1723, 2041-1723
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Abstract We performed a multi-ethnic Epigenome Wide Association study on 22,774 individuals to describe the DNA methylation signature of chronic low-grade inflammation as measured by C-Reactive protein (CRP). We find 1,511 independent differentially methylated loci associated with CRP. These CpG sites show correlation structures across chromosomes, and are primarily situated in euchromatin, depleted in CpG islands. These genomic loci are predominantly situated in transcription factor binding sites and genomic enhancer regions. Mendelian randomization analysis suggests altered CpG methylation is a consequence of increased blood CRP levels. Mediation analysis reveals obesity and smoking as important underlying driving factors for changed CpG methylation. Finally, we find that an activated CpG signature significantly increases the risk for cardiometabolic diseases and COPD. Chronic inflammation, marked by C-reactive protein, has been associated with changes in methylation, but the causal relationship is unclear. Here, the authors perform a Epigenome-wide association meta-analysis for C-reactive protein levels and find that these methylation changes are likely the consequence of inflammation and could contribute to disease.
AbstractList We performed a multi-ethnic Epigenome Wide Association study on 22,774 individuals to describe the DNA methylation signature of chronic low-grade inflammation as measured by C-Reactive protein (CRP). We find 1,511 independent differentially methylated loci associated with CRP. These CpG sites show correlation structures across chromosomes, and are primarily situated in euchromatin, depleted in CpG islands. These genomic loci are predominantly situated in transcription factor binding sites and genomic enhancer regions. Mendelian randomization analysis suggests altered CpG methylation is a consequence of increased blood CRP levels. Mediation analysis reveals obesity and smoking as important underlying driving factors for changed CpG methylation. Finally, we find that an activated CpG signature significantly increases the risk for cardiometabolic diseases and COPD.
We performed a multi-ethnic Epigenome Wide Association study on 22,774 individuals to describe the DNA methylation signature of chronic low-grade inflammation as measured by C-Reactive protein (CRP). We find 1,511 independent differentially methylated loci associated with CRP. These CpG sites show correlation structures across chromosomes, and are primarily situated in euchromatin, depleted in CpG islands. These genomic loci are predominantly situated in transcription factor binding sites and genomic enhancer regions. Mendelian randomization analysis suggests altered CpG methylation is a consequence of increased blood CRP levels. Mediation analysis reveals obesity and smoking as important underlying driving factors for changed CpG methylation. Finally, we find that an activated CpG signature significantly increases the risk for cardiometabolic diseases and COPD. Chronic inflammation, marked by C-reactive protein, has been associated with changes in methylation, but the causal relationship is unclear. Here, the authors perform a Epigenome-wide association meta-analysis for C-reactive protein levels and find that these methylation changes are likely the consequence of inflammation and could contribute to disease.
We performed a multi-ethnic Epigenome Wide Association study on 22,774 individuals to describe the DNA methylation signature of chronic low-grade inflammation as measured by C-Reactive protein (CRP). We find 1,511 independent differentially methylated loci associated with CRP. These CpG sites show correlation structures across chromosomes, and are primarily situated in euchromatin, depleted in CpG islands. These genomic loci are predominantly situated in transcription factor binding sites and genomic enhancer regions. Mendelian randomization analysis suggests altered CpG methylation is a consequence of increased blood CRP levels. Mediation analysis reveals obesity and smoking as important underlying driving factors for changed CpG methylation. Finally, we find that an activated CpG signature significantly increases the risk for cardiometabolic diseases and COPD.We performed a multi-ethnic Epigenome Wide Association study on 22,774 individuals to describe the DNA methylation signature of chronic low-grade inflammation as measured by C-Reactive protein (CRP). We find 1,511 independent differentially methylated loci associated with CRP. These CpG sites show correlation structures across chromosomes, and are primarily situated in euchromatin, depleted in CpG islands. These genomic loci are predominantly situated in transcription factor binding sites and genomic enhancer regions. Mendelian randomization analysis suggests altered CpG methylation is a consequence of increased blood CRP levels. Mediation analysis reveals obesity and smoking as important underlying driving factors for changed CpG methylation. Finally, we find that an activated CpG signature significantly increases the risk for cardiometabolic diseases and COPD.
Chronic inflammation, marked by C-reactive protein, has been associated with changes in methylation, but the causal relationship is unclear. Here, the authors perform a Epigenome-wide association meta-analysis for C-reactive protein levels and find that these methylation changes are likely the consequence of inflammation and could contribute to disease.
We performed a multi-ethnic Epigenome Wide Association study on 22,774 individuals to describe the DNA methylation signature of chronic low-grade inflammation as measured by C-Reactive protein (CRP). We find 1,511 independent differentially methylated loci associated with CRP. These CpG sites show correlation structures across chromosomes, and are primarily situated in euchromatin, depleted in CpG islands. These genomic loci are predominantly situated in transcription factor binding sites and genomic enhancer regions. Mendelian randomization analysis suggests altered CpG methylation is a consequence of increased blood CRP levels. Mediation analysis reveals obesity and smoking as important underlying driving factors for changed CpG methylation. Finally, we find that an activated CpG signature significantly increases the risk for cardiometabolic diseases and COPD. Chronic inflammation, marked by C-reactive protein, has been associated with changes in methylation, but the causal relationship is unclear. Here, the authors perform a Epigenome-wide association meta-analysis for C-reactive protein levels and find that these methylation changes are likely the consequence of inflammation and could contribute to disease.
ArticleNumber 2408
Author Vineis, Paolo
Wilson, Rory
Psaty, Bruce M.
Ong, Ken K.
Mustafa, Rima
Colicino, Elena
Schlosser, Pascal
Palaniswamy, Saranya
Wielscher, Matthias
Karhunen, Ville
Chadeau-Hyam, Marc
Kasela, Silva
Zhang, Yan
Bodinier, Barbara
Cardona, Alexia
Mandaviya, Pooja R.
van Meurs, Joyce B. J.
Tanaka, Toshiko
Brody, Jennifer A.
Deloukas, Panos
Elliott, Paul
Järvelin, Marjo-Riitta
Hurme, Mikko A.
Waldenberger, Melanie
Graf-Schindler, Johanna
Tumino, Rosario
Peters, Annette
Milani, Lili
Bell, Jordana T.
Loh, Marie
Walton, Esther
Rathmann, Wolfgang
Lehtimäki, Terho
Sacerdote, Carlotta
Beekman, Marian
Marouli, Eirini
Grabe, Hans J.
Nauck, Matthias
Lehne, Benjamin
Panico, Salvatore
Krogh, Vittorio
Farlik, Matthias
Guan, Weihua
van der Harst, Pim
Ghanbari, Mohsen
Deary, Ian J.
Waite, Lindsay L.
Kähönen, Mika
Tsai, Pei-Chien
Matullo, Giuseppe
Fisher, Krista
Boerwinkle, Eric
Dehghan, Abbas
Sotoodehnia, Nona
Doerr, Macus
Raitakari, Olli T.
Tzala, Evangelia
Li, Shengxu
Fiorito, Giovanni
Conneely, Karen N.
Heijmans, Bastiaan T.
Köttgen, Anna
Weninger, Wolfgang
Marioni, Ri
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2022. The Author(s).
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Snippet We performed a multi-ethnic Epigenome Wide Association study on 22,774 individuals to describe the DNA methylation signature of chronic low-grade inflammation...
Chronic inflammation, marked by C-reactive protein, has been associated with changes in methylation, but the causal relationship is unclear. Here, the authors...
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StartPage 2408
SubjectTerms 38
45/61
631/208/176/1988
692/163/2743/393
692/499
Binding sites
C-reactive protein
C-Reactive Protein - genetics
Chromosomes
Chronic obstructive pulmonary disease
CpG islands
CpG Islands - genetics
Deoxyribonucleic acid
DNA
DNA methylation
DNA Methylation - genetics
Euchromatin
Genomics
Health risks
Humanities and Social Sciences
Humans
Inflammation
Inflammation - genetics
Loci
multidisciplinary
Nucleotide Motifs
Proteins
Quality
Respiratory diseases
Science
Science (multidisciplinary)
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Title DNA methylation signature of chronic low-grade inflammation and its role in cardio-respiratory diseases
URI https://link.springer.com/article/10.1038/s41467-022-29792-6
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