MSAViewer: interactive JavaScript visualization of multiple sequence alignments
The MSAViewer is a quick and easy visualization and analysis JavaScript component for Multiple Sequence Alignment data of any size. Core features include interactive navigation through the alignment, application of popular color schemes, sorting, selecting and filtering. The MSAViewer is ‘web ready’...
Uložené v:
| Vydané v: | Bioinformatics (Oxford, England) Ročník 32; číslo 22; s. 3501 - 3503 |
|---|---|
| Hlavní autori: | , , , , , , , , |
| Médium: | Journal Article |
| Jazyk: | English |
| Vydavateľské údaje: |
England
Oxford University Press
15.11.2016
|
| Predmet: | |
| ISSN: | 1367-4803, 1367-4811 |
| On-line prístup: | Získať plný text |
| Tagy: |
Pridať tag
Žiadne tagy, Buďte prvý, kto otaguje tento záznam!
|
| Abstract | The MSAViewer is a quick and easy visualization and analysis JavaScript component for Multiple Sequence Alignment data of any size. Core features include interactive navigation through the alignment, application of popular color schemes, sorting, selecting and filtering. The MSAViewer is ‘web ready’: written entirely in JavaScript, compatible with modern web browsers and does not require any specialized software. The MSAViewer is part of the BioJS collection of components.
Availability and Implementation: The MSAViewer is released as open source software under the Boost Software License 1.0. Documentation, source code and the viewer are available at http://msa.biojs.net/.
Supplementary information: Supplementary data are available at Bioinformatics online.
Contact: msa@bio.sh |
|---|---|
| AbstractList | The MSAViewer is a quick and easy visualization and analysis JavaScript component for Multiple Sequence Alignment data of any size. Core features include interactive navigation through the alignment, application of popular color schemes, sorting, selecting and filtering. The MSAViewer is 'web ready': written entirely in JavaScript, compatible with modern web browsers and does not require any specialized software. The MSAViewer is part of the BioJS collection of components.AVAILABILITY AND IMPLEMENTATIONThe MSAViewer is released as open source software under the Boost Software License 1.0. Documentation, source code and the viewer are available at http://msa.biojs.net/Supplementary information: Supplementary data are available at Bioinformatics online.CONTACTmsa@bio.sh. The MSAViewer is a quick and easy visualization and analysis JavaScript component for Multiple Sequence Alignment data of any size. Core features include interactive navigation through the alignment, application of popular color schemes, sorting, selecting and filtering. The MSAViewer is 'web ready': written entirely in JavaScript, compatible with modern web browsers and does not require any specialized software. The MSAViewer is part of the BioJS collection of components. The MSAViewer is released as open source software under the Boost Software License 1.0. Documentation, source code and the viewer are available at http://msa.biojs.net/Supplementary information: Supplementary data are available at Bioinformatics online. msa@bio.sh. The MSAViewer is a quick and easy visualization and analysis JavaScript component for Multiple Sequence Alignment data of any size. Core features include interactive navigation through the alignment, application of popular color schemes, sorting, selecting and filtering. The MSAViewer is ‘web ready’: written entirely in JavaScript, compatible with modern web browsers and does not require any specialized software. The MSAViewer is part of the BioJS collection of components. The MSAViewer is a quick and easy visualization and analysis JavaScript component for Multiple Sequence Alignment data of any size. Core features include interactive navigation through the alignment, application of popular color schemes, sorting, selecting and filtering. The MSAViewer is ‘web ready’: written entirely in JavaScript, compatible with modern web browsers and does not require any specialized software. The MSAViewer is part of the BioJS collection of components. Availability and Implementation: The MSAViewer is released as open source software under the Boost Software License 1.0. Documentation, source code and the viewer are available at http://msa.biojs.net/. Supplementary information: Supplementary data are available at Bioinformatics online. Contact: msa@bio.sh The MSAViewer is a quick and easy visualization and analysis JavaScript component for Multiple Sequence Alignment data of any size. Core features include interactive navigation through the alignment, application of popular color schemes, sorting, selecting and filtering. The MSAViewer is ‘web ready’: written entirely in JavaScript, compatible with modern web browsers and does not require any specialized software. The MSAViewer is part of the BioJS collection of components. Availability and Implementation: The MSAViewer is released as open source software under the Boost Software License 1.0. Documentation, source code and the viewer are available at http://msa.biojs.net/. Supplementary information: Supplementary data are available at Bioinformatics online. Contact: msa@bio.sh |
| Author | Lewis, Suzanna E. Rost, Burkhard Goldberg, Tatyana Rauscher, Benedikt Sheridan, Robert Sillitoe, Ian Yachdav, Guy Wilzbach, Sebastian Procter, James |
| Author_xml | – sequence: 1 givenname: Guy surname: Yachdav fullname: Yachdav, Guy – sequence: 2 givenname: Sebastian surname: Wilzbach fullname: Wilzbach, Sebastian – sequence: 3 givenname: Benedikt surname: Rauscher fullname: Rauscher, Benedikt – sequence: 4 givenname: Robert surname: Sheridan fullname: Sheridan, Robert – sequence: 5 givenname: Ian surname: Sillitoe fullname: Sillitoe, Ian – sequence: 6 givenname: James surname: Procter fullname: Procter, James – sequence: 7 givenname: Suzanna E. surname: Lewis fullname: Lewis, Suzanna E. – sequence: 8 givenname: Burkhard surname: Rost fullname: Rost, Burkhard – sequence: 9 givenname: Tatyana surname: Goldberg fullname: Goldberg, Tatyana |
| BackLink | https://www.ncbi.nlm.nih.gov/pubmed/27412096$$D View this record in MEDLINE/PubMed https://www.osti.gov/servlets/purl/1625288$$D View this record in Osti.gov |
| BookMark | eNqFUUtv1DAQtlAr-oCfAIo4cVnqSfxIQEKqKgpFRT0UuFqOd9IOSuzFdraCX1_TLSvaCydbmu818x2wHR88MvYC-BvgXXPUUyA_hDjZTC4d9flGaPGE7UOj9EK0ADvbP2_22EFKPzjnkkv1lO3VWkDNO7XPLr5cHn8nvMH4tiKfMVqXaY3VZ7u2ly7SKldrSrMd6XcxCr4KQzXNY6bViFXCnzN6h1UZX_kJfU7P2O5gx4TP799D9u30w9eTT4vzi49nJ8fnCycbnRetkAigh04p0CBsyy12ollqt9R1r3sNAx-Ea3U_8Jqrvte17kDikssGtcDmkL3f6K7mfsKlK97RjmYVabLxlwmWzMOJp2tzFdZGQgtS8SLwaiMQUiaTHGV01y54jy4bULWs27aAXt-7xFBWTdlMlByOo_UY5mSgrZUuhwRRoC__DbRN8vfUBSA3ABdDShGHLQS4-VOpeVip2VRaeO8e8UrWuy7KXjT-h30LgrGw5w |
| CitedBy_id | crossref_primary_10_1002_pro_70169 crossref_primary_10_3390_v14020194 crossref_primary_10_1038_s41586_020_03040_7 crossref_primary_10_3389_fgene_2019_00725 crossref_primary_10_1093_bib_bbac222 crossref_primary_10_1038_s41586_022_05453_y crossref_primary_10_3389_fpls_2022_1012688 crossref_primary_10_1016_j_csbj_2021_01_024 crossref_primary_10_1002_pro_4655 crossref_primary_10_3389_fpls_2022_1011199 crossref_primary_10_1016_j_jmb_2024_168556 crossref_primary_10_3389_fpls_2017_02267 crossref_primary_10_1093_nar_gkx277 crossref_primary_10_1016_j_ygeno_2019_01_004 crossref_primary_10_7717_peerj_6176 crossref_primary_10_1155_2018_3958327 crossref_primary_10_1093_genetics_iyae036 crossref_primary_10_1093_nar_gkw1081 crossref_primary_10_1371_journal_ppat_1006882 crossref_primary_10_1186_s12864_022_09086_3 crossref_primary_10_1093_glycob_cwab110 crossref_primary_10_1093_nar_gkad800 crossref_primary_10_1371_journal_ppat_1009744 crossref_primary_10_1093_plphys_kiac297 crossref_primary_10_1089_cmb_2017_0181 crossref_primary_10_1016_j_csbj_2024_04_060 crossref_primary_10_3389_fgene_2020_00455 crossref_primary_10_1093_bib_bbab238 crossref_primary_10_1093_nar_gkz342 crossref_primary_10_1371_journal_pcbi_1006675 crossref_primary_10_1261_rna_078802_121 crossref_primary_10_1093_nar_gkaf398 crossref_primary_10_1093_nar_gkab351 crossref_primary_10_1093_bib_bbx108 crossref_primary_10_1186_s12859_018_2250_y crossref_primary_10_1186_s12859_020_03601_7 crossref_primary_10_1021_acs_jchemed_1c00022 crossref_primary_10_1038_s41598_017_01633_3 crossref_primary_10_3390_informatics4030028 crossref_primary_10_3390_d11090152 crossref_primary_10_1093_nar_gkac894 crossref_primary_10_3835_plantgenome2019_03_0020 crossref_primary_10_1093_nar_gkx1019 crossref_primary_10_3389_fmicb_2022_915069 crossref_primary_10_12688_f1000research_22242_1 crossref_primary_10_12688_f1000research_22242_2 crossref_primary_10_1093_nar_gkac1014 crossref_primary_10_1093_nar_gkab565 crossref_primary_10_14202_IJOH_2025_108_120 crossref_primary_10_1007_s00239_017_9806_8 crossref_primary_10_1007_s00705_024_06076_6 crossref_primary_10_1093_nar_gkx421 crossref_primary_10_1038_s41467_022_30352_1 crossref_primary_10_1038_s41598_018_36124_6 crossref_primary_10_1109_TVCG_2022_3175364 crossref_primary_10_1016_j_jprot_2017_08_021 crossref_primary_10_1093_nar_gkx1002 crossref_primary_10_1371_journal_pone_0201557 crossref_primary_10_1093_nar_gkaa361 crossref_primary_10_1186_s12859_021_04362_7 crossref_primary_10_1186_s12862_019_1371_x crossref_primary_10_1002_pro_4052 crossref_primary_10_1093_nar_gkac1003 crossref_primary_10_1038_s41467_024_55268_w crossref_primary_10_1186_s13073_018_0555_0 crossref_primary_10_1038_s41698_021_00156_5 crossref_primary_10_1016_j_tibtech_2017_03_009 crossref_primary_10_1111_cgf_13727 crossref_primary_10_3390_v11050401 crossref_primary_10_1016_j_cbi_2024_111111 crossref_primary_10_1093_nar_gkaf862 crossref_primary_10_1093_nar_gkaa977 crossref_primary_10_1038_s41598_018_37263_6 crossref_primary_10_1016_j_jmb_2024_168925 crossref_primary_10_3389_fpls_2018_00482 crossref_primary_10_1093_nar_gky974 crossref_primary_10_1093_nar_gkz303 crossref_primary_10_3389_fmicb_2021_711077 crossref_primary_10_1016_j_meegid_2025_105817 crossref_primary_10_1093_hr_uhac221 crossref_primary_10_3897_zse_94_21754 crossref_primary_10_1093_nar_gkad937 crossref_primary_10_1093_nar_gkw1098 crossref_primary_10_1093_bib_bbaa386 crossref_primary_10_1093_nar_gkz916 crossref_primary_10_1128_spectrum_03805_22 crossref_primary_10_1371_journal_ppat_1009537 crossref_primary_10_1016_j_jviromet_2021_114197 crossref_primary_10_1186_s12870_017_1039_x crossref_primary_10_1093_bioadv_vbab009 crossref_primary_10_1093_nar_gkaa1068 crossref_primary_10_1093_jcbiol_ruad076 crossref_primary_10_1093_bib_bbab220 crossref_primary_10_1038_s41586_022_04633_0 crossref_primary_10_1093_nar_gkab408 crossref_primary_10_1093_nar_gkz404 crossref_primary_10_1038_s41559_019_0813_6 crossref_primary_10_1186_s12859_020_3526_6 crossref_primary_10_1016_j_rsma_2024_103443 |
| Cites_doi | 10.1016/j.chom.2014.07.008 10.1016/S0022-2836(05)80360-2 10.1016/j.sbi.2011.03.014 10.1093/nar/gku396 10.1093/bioinformatics/18.suppl_1.S71 10.1093/bioinformatics/btp033 10.1186/1753-6561-8-S2-S8 10.1093/bioinformatics/btm174 10.1093/bioinformatics/btm404 10.12688/f1000research.3-55.v1 10.1101/gr.4086505 10.1101/gr.2289704 10.1093/bioinformatics/btu531 10.1093/nar/18.20.6097 10.1093/nar/gku366 10.12688/f1000research.5486.1 10.1006/jsbi.2001.4336 |
| ContentType | Journal Article |
| Copyright | The Author 2016. Published by Oxford University Press. The Author 2016. Published by Oxford University Press. 2016 |
| Copyright_xml | – notice: The Author 2016. Published by Oxford University Press. – notice: The Author 2016. Published by Oxford University Press. 2016 |
| CorporateAuthor | Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States) |
| CorporateAuthor_xml | – name: Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States) |
| DBID | AAYXX CITATION CGR CUY CVF ECM EIF NPM 7X8 OIOZB OTOTI 5PM |
| DOI | 10.1093/bioinformatics/btw474 |
| DatabaseName | CrossRef Medline MEDLINE MEDLINE (Ovid) MEDLINE MEDLINE PubMed MEDLINE - Academic OSTI.GOV - Hybrid OSTI.GOV PubMed Central (Full Participant titles) |
| DatabaseTitle | CrossRef MEDLINE Medline Complete MEDLINE with Full Text PubMed MEDLINE (Ovid) MEDLINE - Academic |
| DatabaseTitleList | MEDLINE - Academic MEDLINE CrossRef |
| Database_xml | – sequence: 1 dbid: NPM name: PubMed url: http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed sourceTypes: Index Database – sequence: 2 dbid: 7X8 name: MEDLINE - Academic url: https://search.proquest.com/medline sourceTypes: Aggregation Database |
| DeliveryMethod | fulltext_linktorsrc |
| Discipline | Biology Mathematics Computer Science |
| EISSN | 1367-4811 |
| EndPage | 3503 |
| ExternalDocumentID | PMC5181560 1625288 27412096 10_1093_bioinformatics_btw474 |
| Genre | Journal Article |
| GrantInformation_xml | – fundername: Biotechnology and Biological Sciences Research Council grantid: BB/L020742/1 |
| GroupedDBID | --- -E4 -~X .2P .DC .I3 0R~ 1TH 23N 2WC 4.4 48X 53G 5GY 5WA 70D AAIJN AAIMJ AAJKP AAJQQ AAKPC AAMDB AAMVS AAOGV AAPQZ AAPXW AAUQX AAVAP AAVLN AAYXX ABEJV ABEUO ABGNP ABIXL ABNKS ABPQP ABPTD ABQLI ABWST ABXVV ABZBJ ACGFS ACIWK ACPRK ACUFI ACUXJ ACYTK ADBBV ADEYI ADEZT ADFTL ADGKP ADGZP ADHKW ADHZD ADMLS ADOCK ADPDF ADRDM ADRTK ADVEK ADYVW ADZTZ ADZXQ AECKG AEGPL AEJOX AEKKA AEKSI AELWJ AEMDU AENEX AENZO AEPUE AETBJ AEWNT AFFZL AFGWE AFIYH AFOFC AFRAH AGINJ AGKEF AGQXC AGSYK AHMBA AHXPO AIJHB AJEEA AJEUX AKHUL AKWXX ALMA_UNASSIGNED_HOLDINGS ALTZX ALUQC AMNDL APIBT APWMN ARIXL ASPBG AVWKF AXUDD AYOIW AZVOD BAWUL BAYMD BHONS BQDIO BQUQU BSWAC BTQHN C45 CDBKE CITATION CS3 CZ4 DAKXR DIK DILTD DU5 D~K EBD EBS EE~ EJD EMOBN F5P F9B FEDTE FHSFR FLIZI FLUFQ FOEOM FQBLK GAUVT GJXCC GROUPED_DOAJ GX1 H13 H5~ HAR HW0 HZ~ IOX J21 JXSIZ KAQDR KOP KQ8 KSI KSN M-Z MK~ ML0 N9A NGC NLBLG NMDNZ NOMLY NU- NVLIB O9- OAWHX ODMLO OJQWA OK1 OVD OVEED P2P PAFKI PEELM PQQKQ Q1. Q5Y R44 RD5 RNS ROL ROX RPM RUSNO RW1 RXO SV3 TEORI TJP TLC TOX TR2 W8F WOQ X7H YAYTL YKOAZ YXANX ZKX ~91 ~KM CGR CUY CVF ECM EIF NPM 7X8 AABJS AABMN AAESY AAIYJ AAPBV ABPTK ADEIU ADIPN ADORX ADQLU ADRIX AELNO AFXEN AIKOY ARQIP AUCZF AZQFJ BCRHZ BYORX CASEJ DPORF DPPUQ KBUDW M49 OIOZB OTOTI PQEST 5PM |
| ID | FETCH-LOGICAL-c537t-845e117f9661714a80ae943d7cd72b7b71f0f4c87bf0206bb727915ed053e74e3 |
| ISICitedReferencesCount | 134 |
| ISICitedReferencesURI | http://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=Summon&SrcAuth=ProQuest&DestLinkType=CitingArticles&DestApp=WOS_CPL&KeyUT=000392748700020&url=https%3A%2F%2Fcvtisr.summon.serialssolutions.com%2F%23%21%2Fsearch%3Fho%3Df%26include.ft.matches%3Dt%26l%3Dnull%26q%3D |
| ISSN | 1367-4803 |
| IngestDate | Tue Sep 30 16:38:52 EDT 2025 Mon Jul 10 02:32:50 EDT 2023 Fri Jul 11 07:22:48 EDT 2025 Mon Jul 21 06:04:03 EDT 2025 Tue Nov 18 21:17:01 EST 2025 Sat Nov 29 05:34:05 EST 2025 |
| IsDoiOpenAccess | true |
| IsOpenAccess | true |
| IsPeerReviewed | true |
| IsScholarly | true |
| Issue | 22 |
| Language | English |
| License | http://creativecommons.org/licenses/by-nc/4.0 The Author 2016. Published by Oxford University Press. This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com |
| LinkModel | OpenURL |
| MergedId | FETCHMERGED-LOGICAL-c537t-845e117f9661714a80ae943d7cd72b7b71f0f4c87bf0206bb727915ed053e74e3 |
| Notes | ObjectType-Article-1 SourceType-Scholarly Journals-1 ObjectType-Feature-2 content type line 23 AC02-05CH11231 USDOE Office of Science (SC) Associate Editor: John Hancock |
| OpenAccessLink | https://pubmed.ncbi.nlm.nih.gov/PMC5181560 |
| PMID | 27412096 |
| PQID | 1826720914 |
| PQPubID | 23479 |
| PageCount | 3 |
| ParticipantIDs | pubmedcentral_primary_oai_pubmedcentral_nih_gov_5181560 osti_scitechconnect_1625288 proquest_miscellaneous_1826720914 pubmed_primary_27412096 crossref_primary_10_1093_bioinformatics_btw474 crossref_citationtrail_10_1093_bioinformatics_btw474 |
| PublicationCentury | 2000 |
| PublicationDate | 2016-11-15 |
| PublicationDateYYYYMMDD | 2016-11-15 |
| PublicationDate_xml | – month: 11 year: 2016 text: 2016-11-15 day: 15 |
| PublicationDecade | 2010 |
| PublicationPlace | England |
| PublicationPlace_xml | – name: England – name: United States |
| PublicationTitle | Bioinformatics (Oxford, England) |
| PublicationTitleAlternate | Bioinformatics |
| PublicationYear | 2016 |
| Publisher | Oxford University Press |
| Publisher_xml | – name: Oxford University Press |
| References | Larkin (2023020114073004900_btw474-B7) 2007; 23 Kultys (2023020114073004900_btw474-B6) 2014; 8 Waterhouse (2023020114073004900_btw474-B16) 2009; 25 Pupko (2023020114073004900_btw474-B12) 2002; 18 Xu (2023020114073004900_btw474-B17) 2014; 16 Ofran (2023020114073004900_btw474-B10) 2007; 23 Pearson (2023020114073004900_btw474-B11) 2000; 132 Schneider (2023020114073004900_btw474-B15) 1990; 18 Schlessinger (2023020114073004900_btw474-B14) 2011; 21 Darling (2023020114073004900_btw474-B3) 2004; 14 Corpas (2023020114073004900_btw474-B2) 2014; 3 Goldberg (2023020114073004900_btw474-B5) 2014; 42 Rost (2023020114073004900_btw474-B13) 2001; 134 Martin (2023020114073004900_btw474-B9) 2014; 3 Altschul (2023020114073004900_btw474-B1) 1990; 215 Giardine (2023020114073004900_btw474-B4) 2005; 15 Yachdav (2023020114073004900_btw474-B18) 2014; 42 Larsson (2023020114073004900_btw474-B8) 2014; 30 |
| References_xml | – volume: 16 start-page: 187 year: 2014 ident: 2023020114073004900_btw474-B17 article-title: Ebola virus VP24 targets a unique NLS binding site on karyopherin alpha 5 to selectively compete with nuclear import of phosphorylated STAT1 publication-title: Cell Host Microbe doi: 10.1016/j.chom.2014.07.008 – volume: 215 start-page: 403 year: 1990 ident: 2023020114073004900_btw474-B1 article-title: Basic local alignment search tool publication-title: J. Mol. Biol doi: 10.1016/S0022-2836(05)80360-2 – volume: 21 start-page: 412 year: 2011 ident: 2023020114073004900_btw474-B14 article-title: Protein disorder–a breakthrough invention of evolution? publication-title: Curr. Opin. Struct. Biol doi: 10.1016/j.sbi.2011.03.014 – volume: 42 start-page: W350 year: 2014 ident: 2023020114073004900_btw474-B5 article-title: LocTree3 prediction of localization publication-title: Nucleic Acids Res doi: 10.1093/nar/gku396 – volume: 18 start-page: S71 year: 2002 ident: 2023020114073004900_btw474-B12 article-title: Rate4Site: an algorithmic tool for the identification of functional regions in proteins by surface mapping of evolutionary determinants within their homologues publication-title: Bioinformatics doi: 10.1093/bioinformatics/18.suppl_1.S71 – volume: 25 start-page: 1189 year: 2009 ident: 2023020114073004900_btw474-B16 article-title: Jalview Version 2–a multiple sequence alignment editor and analysis workbench publication-title: Bioinformatics doi: 10.1093/bioinformatics/btp033 – volume: 8 start-page: S8 year: 2014 ident: 2023020114073004900_btw474-B6 article-title: Sequence Bundles: a novel method for visualising, discovering and exploring sequence motifs publication-title: BMC Proc doi: 10.1186/1753-6561-8-S2-S8 – volume: 23 start-page: i347 year: 2007 ident: 2023020114073004900_btw474-B10 article-title: Prediction of DNA-binding residues from sequence publication-title: Bioinformatics doi: 10.1093/bioinformatics/btm174 – volume: 23 start-page: 2947 year: 2007 ident: 2023020114073004900_btw474-B7 article-title: Clustal W and Clustal X version 2.0 publication-title: Bioinformatics doi: 10.1093/bioinformatics/btm404 – volume: 3 start-page: 55 year: 2014 ident: 2023020114073004900_btw474-B2 article-title: BioJS: an open source standard for biological visualisation - its status in 2014 publication-title: F1000Res doi: 10.12688/f1000research.3-55.v1 – volume: 15 start-page: 1451 year: 2005 ident: 2023020114073004900_btw474-B4 article-title: Galaxy: a platform for interactive large-scale genome analysis publication-title: Genome Res doi: 10.1101/gr.4086505 – volume: 132 start-page: 185 year: 2000 ident: 2023020114073004900_btw474-B11 article-title: Flexible sequence similarity searching with the FASTA3 program package publication-title: Methods Mol. Biol – volume: 14 start-page: 1394 year: 2004 ident: 2023020114073004900_btw474-B3 article-title: Mauve: multiple alignment of conserved genomic sequence with rearrangements publication-title: Genome Res doi: 10.1101/gr.2289704 – volume: 30 start-page: 3276 year: 2014 ident: 2023020114073004900_btw474-B8 article-title: AliView: a fast and lightweight alignment viewer and editor for large datasets publication-title: Bioinformatics doi: 10.1093/bioinformatics/btu531 – volume: 18 start-page: 6097 year: 1990 ident: 2023020114073004900_btw474-B15 article-title: Sequence logos: a new way to display consensus sequences publication-title: Nucleic Acids Res doi: 10.1093/nar/18.20.6097 – volume: 42 start-page: W337 year: 2014 ident: 2023020114073004900_btw474-B18 article-title: PredictProtein–an open resource for online prediction of protein structural and functional features publication-title: Nucleic Acids Res doi: 10.1093/nar/gku366 – volume: 3 start-page: 249 year: 2014 ident: 2023020114073004900_btw474-B9 article-title: Viewing multiple sequence alignments with the JavaScript Sequence Alignment Viewer (JSAV) publication-title: F1000Res doi: 10.12688/f1000research.5486.1 – volume: 134 start-page: 204 year: 2001 ident: 2023020114073004900_btw474-B13 article-title: Review: protein secondary structure prediction continues to rise publication-title: J. Struct. Biol doi: 10.1006/jsbi.2001.4336 |
| SSID | ssj0005056 |
| Score | 2.5672982 |
| Snippet | The MSAViewer is a quick and easy visualization and analysis JavaScript component for Multiple Sequence Alignment data of any size. Core features include... |
| SourceID | pubmedcentral osti proquest pubmed crossref |
| SourceType | Open Access Repository Aggregation Database Index Database Enrichment Source |
| StartPage | 3501 |
| SubjectTerms | Applications Notes BASIC BIOLOGICAL SCIENCES Biochemistry & Molecular Biology Biotechnology & Applied Microbiology Computer Science Mathematical & Computational Biology Mathematics MATHEMATICS AND COMPUTING Programming Languages Sequence Alignment Software Web Browser |
| Title | MSAViewer: interactive JavaScript visualization of multiple sequence alignments |
| URI | https://www.ncbi.nlm.nih.gov/pubmed/27412096 https://www.proquest.com/docview/1826720914 https://www.osti.gov/servlets/purl/1625288 https://pubmed.ncbi.nlm.nih.gov/PMC5181560 |
| Volume | 32 |
| WOSCitedRecordID | wos000392748700020&url=https%3A%2F%2Fcvtisr.summon.serialssolutions.com%2F%23%21%2Fsearch%3Fho%3Df%26include.ft.matches%3Dt%26l%3Dnull%26q%3D |
| hasFullText | 1 |
| inHoldings | 1 |
| isFullTextHit | |
| isPrint | |
| journalDatabaseRights | – providerCode: PRVASL databaseName: Oxford Journals Open Access Collection customDbUrl: eissn: 1367-4811 dateEnd: 99991231 omitProxy: false ssIdentifier: ssj0005056 issn: 1367-4803 databaseCode: TOX dateStart: 19850101 isFulltext: true titleUrlDefault: https://academic.oup.com/journals/ providerName: Oxford University Press – providerCode: PRVASL databaseName: Oxford Journals Open Access Collection customDbUrl: eissn: 1367-4811 dateEnd: 20220930 omitProxy: false ssIdentifier: ssj0005056 issn: 1367-4803 databaseCode: TOX dateStart: 19850101 isFulltext: true titleUrlDefault: https://academic.oup.com/journals/ providerName: Oxford University Press |
| link | http://cvtisr.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwtV1bb9MwFLa6AhIviOsogylIvFVhcZzUDm9jAiHELqIFlacodhyIKGm1ptnYv-QfcWzHuUwTN4mXqHXiJPX39fh2zncQeiY4EyGPqEuzULhBxonLfcHdlHBGSMSY5Fpn9h09OmLzeXQyGPywsTDVghYFOz-PVv8VaigDsFXo7F_A3dwUCuAzgA5HgB2OfwT84XT_Yy7PpM7_qNQgdBxUJcdvkyqZaiMxrvK1Cqa8aMaLjV-hda0ew-nPJv6tt--bL2upVS3vrLRKz617fJ0PpLO28ClRLqiVXnvftGv3-eKCJyYF1VRCN1p2KPo-2awtj16CHU7zr41jjpKRzNN640p7hHfXLPBEBe-ZqM1fxUJ2zDBRauzMM6ZPdstq01zb7nZtdGMDnGtLrDZMO706fCVX9hhGTYv3Wk8VlGeBSR_Uoczqm-aMUvzxveiSgrceE5wcHoRYCfB4W-iaT8NIeRnOjuet15GnEwo3P9AGlUVkr_8Oe-YNlFh1_bjeyGm4BHCumhVddu7tjJZmt9Gteprj7Bt63kEDWdxFN0zi0-_30HFD0hdOh6JOS1GnR1FnmTmWoo6lqNNS9D768PrV7OCNW6f2cEVIaOmyIJQY0wwm25jiIGFeIqOApFSk1OeUU5x5WSAY5RnMZyacwzA7wqFMoc-QNJDkARoWy0I-RE4II-yEe2lAUx7AlWwCzE18j6Yyw0RkIxTYZotFrXuv0q8sYuN_QeJ-w8em4UfoeVNtZYRffldhR2ESw8hVyS8L5acmyhhP_NBnbISeWqhiMOBqVy4p5HKzjtUEnwK-GO6wbaBrHmihHyHaA7W5QInD988U-RctEl_T8NE_19xBN9u_7mM0LE838gm6LqoyX5_uoi06Z7ua2z8BR9_sWg |
| linkProvider | Oxford University Press |
| openUrl | ctx_ver=Z39.88-2004&ctx_enc=info%3Aofi%2Fenc%3AUTF-8&rfr_id=info%3Asid%2Fsummon.serialssolutions.com&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Ajournal&rft.genre=article&rft.atitle=MSAViewer%3A+interactive+JavaScript+visualization+of+multiple+sequence+alignments&rft.jtitle=Bioinformatics+%28Oxford%2C+England%29&rft.au=Yachdav%2C+Guy&rft.au=Wilzbach%2C+Sebastian&rft.au=Rauscher%2C+Benedikt&rft.au=Sheridan%2C+Robert&rft.date=2016-11-15&rft.pub=Oxford+University+Press&rft.issn=1367-4803&rft.eissn=1367-4811&rft.volume=32&rft.issue=22&rft.spage=3501&rft.epage=3503&rft_id=info:doi/10.1093%2Fbioinformatics%2Fbtw474&rft_id=info%3Apmid%2F27412096&rft.externalDocID=PMC5181560 |
| thumbnail_l | http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/lc.gif&issn=1367-4803&client=summon |
| thumbnail_m | http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/mc.gif&issn=1367-4803&client=summon |
| thumbnail_s | http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/sc.gif&issn=1367-4803&client=summon |