UTAP: User-friendly Transcriptome Analysis Pipeline

Background RNA-Seq technology is routinely used to characterize the transcriptome, and to detect gene expression differences among cell types, genotypes and conditions. Advances in short-read sequencing instruments such as Illumina Next-Seq have yielded easy-to-operate machines, with high throughput...

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Bibliographic Details
Published in:	BMC bioinformatics Vol. 20; no. 1; pp. 154 - 7
Main Authors:	Kohen, Refael, Barlev, Jonathan, Hornung, Gil, Stelzer, Gil, Feldmesser, Ester, Kogan, Kiril, Safran, Marilyn, Leshkowitz, Dena
Format:	Journal Article
Language:	English
Published:	London BioMed Central 25.03.2019 Springer Nature B.V BMC
Subjects:	Algorithms Bioinformatics Bioinformatics workflow Biomedical and Life Sciences Computational Biology/Bioinformatics Computer Appl. in Life Sciences Data analysis Data processing Differentially expressed genes Gene expression Gene Expression Profiling - methods Gene sequencing Genetic engineering Genomes Genomics Genotypes High-Throughput Nucleotide Sequencing - methods Life Sciences Microarrays NGS Packaging Ribonucleic acid RNA RNA-Seq Sequence analysis pipeline Sequence Analysis, RNA - methods Software Transcriptome Transcriptome analysis User interface Differentially expressed genes RNA-Seq Transcriptome Bioinformatics workflow Normalization NGS Sequence analysis pipeline Genome mapping Bulk MARS-Seq UMI (unique molecular identifier) Gene expression profile
ISSN:	1471-2105, 1471-2105
Online Access:	Get full text
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