DENVirDB: A web portal of Dengue Virus sequence information on Asian isolates

DENVirDB is a web portal that provides the sequence information and computationally curated information of dengue viral proteins. The advent of genomic technology has increased the sequences available in the public databases. In order to create relevant concise information on Dengue Virus (DENV), th...

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Vydáno v:Journal of vector borne diseases Ročník 51; číslo 2; s. 82 - 85
Hlavní autoři: Asnet, MaryJ, Rubia, AmalGP, Ramya, G, Nagalakshmi, RNithya, Shenbagarathai, R
Médium: Journal Article
Jazyk:angličtina
Vydáno: India Medknow Publications and Media Pvt. Ltd 01.06.2014
Medknow Publications & Media Pvt. Ltd
Wolters Kluwer Medknow Publications
Témata:
Asia
Binding sites
Database; Dengue Virus; Genome; HMMTOP; MySQL; PHP
Databases, Genetic
Dengue fever
Dengue Virus - genetics
Dengue viruses
Genetic aspects
Genetic diversity
Genetic Variation
Genome, Viral - genetics
Genomes
Genomic libraries
Genomics
Genomics - methods
Information management
Internet
Molecular weight
Proteins
Viral infections
Web portals
Asia
Southeast Asia
ISSN:0972-9062, 0972-9062
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Popis
Shrnutí:DENVirDB is a web portal that provides the sequence information and computationally curated information of dengue viral proteins. The advent of genomic technology has increased the sequences available in the public databases. In order to create relevant concise information on Dengue Virus (DENV), the genomic sequences were collected, analysed with the bioinformatics tools and presented as DENVirDB. It provides the comprehensive information of complete genome sequences of dengue virus isolates of Southeast Asia, viz. India, Bangladesh, Sri Lanka, East Timor, Philippines, Malaysia, Papua New Guinea, Brunei and China. DENVirDB also includes the structural and non-structural protein sequences of DENV. It intends to provide the integrated information on the physicochemical properties, topology, secondary structure, domain and structural properties for each protein sequences. It contains over 99 entries in complete genome sequences and 990 entries in protein sequences, respectively. Therefore, DENVirDB could serve as a user friendly database for researchers in acquiring sequences and proteomic information in one platform.
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ISSN:0972-9062
0972-9062
DOI:10.4103/0972-9062.134777