Partition function and base pairing probabilities for RNA–RNA interaction prediction

Motivation: The RNA–RNA interaction problem (RIP) consists in finding the energetically optimal structure of two RNA molecules that bind to each other. The standard model allows secondary structures in both partners as well as additional base pairs between the two RNAs subject to certain restriction...

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Bibliographic Details
Published in:	Bioinformatics Vol. 25; no. 20; pp. 2646 - 2654
Main Authors:	Huang, Fenix W. D., Qin, Jing, Reidys, Christian M., Stadler, Peter F.
Format:	Journal Article
Language:	English
Published:	Oxford Oxford University Press 15.10.2009
Subjects:	Algorithms Base Pairing Biological and medical sciences Computational Biology - methods Databases, Genetic Fundamental and applied biological sciences. Psychology General aspects Mathematics in biology. Statistical analysis. Models. Metrology. Data processing in biology (general aspects) Nucleic Acid Conformation RNA - chemistry RNA - metabolism Thermodynamics Partition Partition function RNA Interaction Prediction Probability Base pairing
ISSN:	1367-4803, 1367-4811, 1460-2059, 1367-4811
Online Access:	Get full text
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