Patterns of rare and abundant marine microbial eukaryotes
Biological communities are normally composed of a few abundant and many rare species. This pattern is particularly prominent in microbial communities, in which most constituent taxa are usually extremely rare. Although abundant and rare subcommunities may present intrinsic characteristics that could...
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| Vydáno v: | Current biology Ročník 24; číslo 8; s. 813 |
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| Hlavní autoři: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
| Médium: | Journal Article |
| Jazyk: | angličtina |
| Vydáno: |
England
14.04.2014
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| Témata: | |
| ISSN: | 1879-0445, 1879-0445 |
| On-line přístup: | Zjistit podrobnosti o přístupu |
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| Abstract | Biological communities are normally composed of a few abundant and many rare species. This pattern is particularly prominent in microbial communities, in which most constituent taxa are usually extremely rare. Although abundant and rare subcommunities may present intrinsic characteristics that could be crucial for understanding community dynamics and ecosystem functioning, microbiologists normally do not differentiate between them. Here, we investigate abundant and rare subcommunities of marine microbial eukaryotes, a crucial group of organisms that remains among the least-explored biodiversity components of the biosphere. We surveyed surface waters of six separate coastal locations in Europe, independently considering the picoplankton, nanoplankton, and microplankton/mesoplankton organismal size fractions.
Deep Illumina sequencing of the 18S rRNA indicated that the abundant regional community was mostly structured by organismal size fraction, whereas the rare regional community was mainly structured by geographic origin. However, some abundant and rare taxa presented similar biogeography, pointing to spatiotemporal structure in the rare microeukaryote biosphere. Abundant and rare subcommunities presented regular proportions across samples, indicating similar species-abundance distributions despite taxonomic compositional variation. Several taxa were abundant in one location and rare in other locations, suggesting large oscillations in abundance. The substantial amount of metabolically active lineages found in the rare biosphere suggests that this subcommunity constitutes a diversity reservoir that can respond rapidly to environmental change.
We propose that marine planktonic microeukaryote assemblages incorporate dynamic and metabolically active abundant and rare subcommunities, with contrasting structuring patterns but fairly regular proportions, across space and time. |
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| AbstractList | Biological communities are normally composed of a few abundant and many rare species. This pattern is particularly prominent in microbial communities, in which most constituent taxa are usually extremely rare. Although abundant and rare subcommunities may present intrinsic characteristics that could be crucial for understanding community dynamics and ecosystem functioning, microbiologists normally do not differentiate between them. Here, we investigate abundant and rare subcommunities of marine microbial eukaryotes, a crucial group of organisms that remains among the least-explored biodiversity components of the biosphere. We surveyed surface waters of six separate coastal locations in Europe, independently considering the picoplankton, nanoplankton, and microplankton/mesoplankton organismal size fractions.BACKGROUNDBiological communities are normally composed of a few abundant and many rare species. This pattern is particularly prominent in microbial communities, in which most constituent taxa are usually extremely rare. Although abundant and rare subcommunities may present intrinsic characteristics that could be crucial for understanding community dynamics and ecosystem functioning, microbiologists normally do not differentiate between them. Here, we investigate abundant and rare subcommunities of marine microbial eukaryotes, a crucial group of organisms that remains among the least-explored biodiversity components of the biosphere. We surveyed surface waters of six separate coastal locations in Europe, independently considering the picoplankton, nanoplankton, and microplankton/mesoplankton organismal size fractions.Deep Illumina sequencing of the 18S rRNA indicated that the abundant regional community was mostly structured by organismal size fraction, whereas the rare regional community was mainly structured by geographic origin. However, some abundant and rare taxa presented similar biogeography, pointing to spatiotemporal structure in the rare microeukaryote biosphere. Abundant and rare subcommunities presented regular proportions across samples, indicating similar species-abundance distributions despite taxonomic compositional variation. Several taxa were abundant in one location and rare in other locations, suggesting large oscillations in abundance. The substantial amount of metabolically active lineages found in the rare biosphere suggests that this subcommunity constitutes a diversity reservoir that can respond rapidly to environmental change.RESULTSDeep Illumina sequencing of the 18S rRNA indicated that the abundant regional community was mostly structured by organismal size fraction, whereas the rare regional community was mainly structured by geographic origin. However, some abundant and rare taxa presented similar biogeography, pointing to spatiotemporal structure in the rare microeukaryote biosphere. Abundant and rare subcommunities presented regular proportions across samples, indicating similar species-abundance distributions despite taxonomic compositional variation. Several taxa were abundant in one location and rare in other locations, suggesting large oscillations in abundance. The substantial amount of metabolically active lineages found in the rare biosphere suggests that this subcommunity constitutes a diversity reservoir that can respond rapidly to environmental change.We propose that marine planktonic microeukaryote assemblages incorporate dynamic and metabolically active abundant and rare subcommunities, with contrasting structuring patterns but fairly regular proportions, across space and time.CONCLUSIONSWe propose that marine planktonic microeukaryote assemblages incorporate dynamic and metabolically active abundant and rare subcommunities, with contrasting structuring patterns but fairly regular proportions, across space and time. Biological communities are normally composed of a few abundant and many rare species. This pattern is particularly prominent in microbial communities, in which most constituent taxa are usually extremely rare. Although abundant and rare subcommunities may present intrinsic characteristics that could be crucial for understanding community dynamics and ecosystem functioning, microbiologists normally do not differentiate between them. Here, we investigate abundant and rare subcommunities of marine microbial eukaryotes, a crucial group of organisms that remains among the least-explored biodiversity components of the biosphere. We surveyed surface waters of six separate coastal locations in Europe, independently considering the picoplankton, nanoplankton, and microplankton/mesoplankton organismal size fractions. Deep Illumina sequencing of the 18S rRNA indicated that the abundant regional community was mostly structured by organismal size fraction, whereas the rare regional community was mainly structured by geographic origin. However, some abundant and rare taxa presented similar biogeography, pointing to spatiotemporal structure in the rare microeukaryote biosphere. Abundant and rare subcommunities presented regular proportions across samples, indicating similar species-abundance distributions despite taxonomic compositional variation. Several taxa were abundant in one location and rare in other locations, suggesting large oscillations in abundance. The substantial amount of metabolically active lineages found in the rare biosphere suggests that this subcommunity constitutes a diversity reservoir that can respond rapidly to environmental change. We propose that marine planktonic microeukaryote assemblages incorporate dynamic and metabolically active abundant and rare subcommunities, with contrasting structuring patterns but fairly regular proportions, across space and time. |
| Author | Zingone, Adriana Dolan, John R Logares, Ramiro Bass, David Mahé, Frédéric Wincker, Patrick Richards, Thomas A Gobet, Angélique Pawlowski, Jan Kooistra, Wiebe H C F Pernice, Massimo C Simon, Nathalie Boutte, Christophe Bittner, Lucie Christen, Richard Romac, Sarah Shalchian-Tabrizi, Kamran Dunthorn, Micah Ogata, Hiroyuki Santini, Sébastien Siano, Raffaele Stoeck, Thorsten Audic, Stéphane Claverie, Jean-Michel Decelle, Johan Not, Fabrice Massana, Ramon de Vargas, Colomban Edvardsen, Bente |
| Author_xml | – sequence: 1 givenname: Ramiro surname: Logares fullname: Logares, Ramiro email: ramiro.logares@gmail.com organization: Institut de Ciències del Mar (ICM), CSIC, Passeig Marítim de la Barceloneta 37-49, 08003 Barcelona, Spain. Electronic address: ramiro.logares@gmail.com – sequence: 2 givenname: Stéphane surname: Audic fullname: Audic, Stéphane organization: ADMM UMR 7144, UPMC Paris 06, Station Biologique de Roscoff, 29682 Roscoff, France; ADMM UMR 7144, CNRS, Station Biologique de Roscoff, 29682 Roscoff, France – sequence: 3 givenname: David surname: Bass fullname: Bass, David organization: Department of Life Sciences, Natural History Museum, Cromwell Road, London SW7 5BD, UK – sequence: 4 givenname: Lucie surname: Bittner fullname: Bittner, Lucie organization: ADMM UMR 7144, UPMC Paris 06, Station Biologique de Roscoff, 29682 Roscoff, France; ADMM UMR 7144, CNRS, Station Biologique de Roscoff, 29682 Roscoff, France; Department of Ecology, University of Kaiserslautern, 67663 Kaiserslautern, Germany – sequence: 5 givenname: Christophe surname: Boutte fullname: Boutte, Christophe organization: ADMM UMR 7144, UPMC Paris 06, Station Biologique de Roscoff, 29682 Roscoff, France; ADMM UMR 7144, CNRS, Station Biologique de Roscoff, 29682 Roscoff, France – sequence: 6 givenname: Richard surname: Christen fullname: Christen, Richard organization: SAE UMR 7138, CNRS, Parc Valrose BP71, 06108 Nice Cedex 02, France; SAE UMR 7138, Université de Nice-Sophia Antipolis, Parc Valrose BP71, 06108 Nice Cedex 02, France – sequence: 7 givenname: Jean-Michel surname: Claverie fullname: Claverie, Jean-Michel organization: IGS UMR 7256, CNRS, Aix-Marseille Université, 13288 Marseille, France – sequence: 8 givenname: Johan surname: Decelle fullname: Decelle, Johan organization: ADMM UMR 7144, UPMC Paris 06, Station Biologique de Roscoff, 29682 Roscoff, France; ADMM UMR 7144, CNRS, Station Biologique de Roscoff, 29682 Roscoff, France – sequence: 9 givenname: John R surname: Dolan fullname: Dolan, John R organization: LOV UMR 7093, CNRS, UPMC Paris 06, 06230 Villefranche-sur-Mer, France – sequence: 10 givenname: Micah surname: Dunthorn fullname: Dunthorn, Micah organization: Department of Ecology, University of Kaiserslautern, 67663 Kaiserslautern, Germany – sequence: 11 givenname: Bente surname: Edvardsen fullname: Edvardsen, Bente organization: Department of Biosciences, University of Oslo, P.O. Box 1066 Blindern, 0316 Oslo, Norway – sequence: 12 givenname: Angélique surname: Gobet fullname: Gobet, Angélique organization: ADMM UMR 7144, UPMC Paris 06, Station Biologique de Roscoff, 29682 Roscoff, France; ADMM UMR 7144, CNRS, Station Biologique de Roscoff, 29682 Roscoff, France – sequence: 13 givenname: Wiebe H C F surname: Kooistra fullname: Kooistra, Wiebe H C F organization: Ecology and Evolution of Plankton, Stazione Zoologica Anton Dohrn, Villa Comunale 1, 80121 Naples, Italy – sequence: 14 givenname: Frédéric surname: Mahé fullname: Mahé, Frédéric organization: ADMM UMR 7144, UPMC Paris 06, Station Biologique de Roscoff, 29682 Roscoff, France; ADMM UMR 7144, CNRS, Station Biologique de Roscoff, 29682 Roscoff, France; Department of Ecology, University of Kaiserslautern, 67663 Kaiserslautern, Germany – sequence: 15 givenname: Fabrice surname: Not fullname: Not, Fabrice organization: ADMM UMR 7144, UPMC Paris 06, Station Biologique de Roscoff, 29682 Roscoff, France; ADMM UMR 7144, CNRS, Station Biologique de Roscoff, 29682 Roscoff, France – sequence: 16 givenname: Hiroyuki surname: Ogata fullname: Ogata, Hiroyuki organization: IGS UMR 7256, CNRS, Aix-Marseille Université, 13288 Marseille, France; Education Academy of Computational Life Sciences, Tokyo Institute of Technology, Tokyo 152-8552, Japan – sequence: 17 givenname: Jan surname: Pawlowski fullname: Pawlowski, Jan organization: Department of Genetics and Evolution, University of Geneva, 1211 Geneva, Switzerland – sequence: 18 givenname: Massimo C surname: Pernice fullname: Pernice, Massimo C organization: Institut de Ciències del Mar (ICM), CSIC, Passeig Marítim de la Barceloneta 37-49, 08003 Barcelona, Spain – sequence: 19 givenname: Sarah surname: Romac fullname: Romac, Sarah organization: ADMM UMR 7144, UPMC Paris 06, Station Biologique de Roscoff, 29682 Roscoff, France; ADMM UMR 7144, CNRS, Station Biologique de Roscoff, 29682 Roscoff, France – sequence: 20 givenname: Kamran surname: Shalchian-Tabrizi fullname: Shalchian-Tabrizi, Kamran organization: Department of Biosciences, University of Oslo, P.O. Box 1066 Blindern, 0316 Oslo, Norway – sequence: 21 givenname: Nathalie surname: Simon fullname: Simon, Nathalie organization: ADMM UMR 7144, UPMC Paris 06, Station Biologique de Roscoff, 29682 Roscoff, France; ADMM UMR 7144, CNRS, Station Biologique de Roscoff, 29682 Roscoff, France – sequence: 22 givenname: Thorsten surname: Stoeck fullname: Stoeck, Thorsten organization: Department of Ecology, University of Kaiserslautern, 67663 Kaiserslautern, Germany – sequence: 23 givenname: Sébastien surname: Santini fullname: Santini, Sébastien organization: IGS UMR 7256, CNRS, Aix-Marseille Université, 13288 Marseille, France – sequence: 24 givenname: Raffaele surname: Siano fullname: Siano, Raffaele organization: Ifremer, Centre de Brest, DYNECO/Pelagos BP70, 29280 Plouzané, France – sequence: 25 givenname: Patrick surname: Wincker fullname: Wincker, Patrick organization: CEA, Genoscope, 2 Rue Gaston Crémieux, 91000 Evry, France – sequence: 26 givenname: Adriana surname: Zingone fullname: Zingone, Adriana organization: Ecology and Evolution of Plankton, Stazione Zoologica Anton Dohrn, Villa Comunale 1, 80121 Naples, Italy – sequence: 27 givenname: Thomas A surname: Richards fullname: Richards, Thomas A organization: Biosciences, University of Exeter, Geoffrey Pope Building, Exeter EX4 4QD, UK – sequence: 28 givenname: Colomban surname: de Vargas fullname: de Vargas, Colomban organization: ADMM UMR 7144, UPMC Paris 06, Station Biologique de Roscoff, 29682 Roscoff, France; ADMM UMR 7144, CNRS, Station Biologique de Roscoff, 29682 Roscoff, France – sequence: 29 givenname: Ramon surname: Massana fullname: Massana, Ramon organization: Institut de Ciències del Mar (ICM), CSIC, Passeig Marítim de la Barceloneta 37-49, 08003 Barcelona, Spain |
| BackLink | https://www.ncbi.nlm.nih.gov/pubmed/24704080$$D View this record in MEDLINE/PubMed |
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