Dual Effects of a RETN Single Nucleotide Polymorphism (SNP) at –420 on Plasma Resistin: Genotype and DNA Methylation
Methylation at RETN SNP–420 was inversely associated with plasma resistin dependent and independent of SNP–420 genotypes in the general Japanese population.AbstractContext:We previously reported that single nucleotide polymorphism (SNP)–420 C>G (rs1862513) in the promoter region of RETN was assoc...
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| Published in: | The journal of clinical endocrinology and metabolism Vol. 102; no. 3; pp. 884 - 892 |
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| Language: | English |
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Endocrine Society
01.03.2017
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| Abstract | Methylation at RETN SNP–420 was inversely associated with plasma resistin dependent and independent of SNP–420 genotypes in the general Japanese population.AbstractContext:We previously reported that single nucleotide polymorphism (SNP)–420 C>G (rs1862513) in the promoter region of RETN was associated with type 2 diabetes. Plasma resistin was tightly correlated with SNP–420 genotypes. SNP–420 is a CpG-SNP affecting the sequence of cytosine–phosphate–guanine dinucleotides.Objective:To examine whether methylation at SNP–420 affects plasma resistin, we analyzed plasma resistin and methylation at RETN SNP–420.Design and Methods:Genomic DNA was extracted from peripheral white blood cells in 2078 Japanese subjects. Quantification of the methylation was performed by pyrosequencing after DNA bisulfite conversion.Results:Methylation at SNP–420 was highest in the C/C genotype (36.9 ± 5.7%), followed by C/G (21.4 ± 3.5%) and G/G (2.9 ± 1.4%; P < 0.001). When assessed in each genotype, methylation at SNP–420 was inversely associated with plasma resistin in the C/C (β = –0.134, P < 0.001) or C/G (β = –0.227, P < 0.001) genotype. In THP-1 human monocytes intrinsically having the C/C genotype, a demethylating reagent, 5-aza-dC, decreased the methylation at SNP–420 and increased RETN messenger RNA. SNP+1263 (rs3745369), located in the 3′ untranslated region of RETN, was also associated with methylation at SNP–420. In addition, highly sensitive C-reactive protein was inversely associated with methylation at SNP–420 in the C/C genotype, whereas body mass index was positively associated.Conclusions:Plasma resistin was inversely associated with the extent of methylation at SNP–420 mainly dependent on the SNP–420 genotype. The association can also be explained partially independent of SNP–420 genotypes. SNP–420 could have dual, genetic and epigenetic effects on plasma resistin. |
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| AbstractList | Context:We previously reported that single nucleotide polymorphism (SNP)–420 C>G (rs1862513) in the promoter region of RETN was associated with type 2 diabetes. Plasma resistin was tightly correlated with SNP–420 genotypes. SNP–420 is a CpG-SNP affecting the sequence of cytosine–phosphate–guanine dinucleotides.Objective:To examine whether methylation at SNP–420 affects plasma resistin, we analyzed plasma resistin and methylation at RETN SNP–420.Design and Methods:Genomic DNA was extracted from peripheral white blood cells in 2078 Japanese subjects. Quantification of the methylation was performed by pyrosequencing after DNA bisulfite conversion.Results:Methylation at SNP–420 was highest in the C/C genotype (36.9 ± 5.7%), followed by C/G (21.4 ± 3.5%) and G/G (2.9 ± 1.4%; P < 0.001). When assessed in each genotype, methylation at SNP–420 was inversely associated with plasma resistin in the C/C (β = –0.134, P < 0.001) or C/G (β = –0.227, P < 0.001) genotype. In THP-1 human monocytes intrinsically having the C/C genotype, a demethylating reagent, 5-aza-dC, decreased the methylation at SNP–420 and increased RETN messenger RNA. SNP+1263 (rs3745369), located in the 3′ untranslated region of RETN, was also associated with methylation at SNP–420. In addition, highly sensitive C-reactive protein was inversely associated with methylation at SNP–420 in the C/C genotype, whereas body mass index was positively associated.Conclusions:Plasma resistin was inversely associated with the extent of methylation at SNP–420 mainly dependent on the SNP–420 genotype. The association can also be explained partially independent of SNP–420 genotypes. SNP–420 could have dual, genetic and epigenetic effects on plasma resistin. CONTEXTWe previously reported that single nucleotide polymorphism (SNP)-420 C>G (rs1862513) in the promoter region of RETN was associated with type 2 diabetes. Plasma resistin was tightly correlated with SNP-420 genotypes. SNP-420 is a CpG-SNP affecting the sequence of cytosine-phosphate-guanine dinucleotides.OBJECTIVETo examine whether methylation at SNP-420 affects plasma resistin, we analyzed plasma resistin and methylation at RETN SNP-420.DESIGN AND METHODSGenomic DNA was extracted from peripheral white blood cells in 2078 Japanese subjects. Quantification of the methylation was performed by pyrosequencing after DNA bisulfite conversion.RESULTSMethylation at SNP-420 was highest in the C/C genotype (36.9 ± 5.7%), followed by C/G (21.4 ± 3.5%) and G/G (2.9 ± 1.4%; P < 0.001). When assessed in each genotype, methylation at SNP-420 was inversely associated with plasma resistin in the C/C (β = -0.134, P < 0.001) or C/G (β = -0.227, P < 0.001) genotype. In THP-1 human monocytes intrinsically having the C/C genotype, a demethylating reagent, 5-aza-dC, decreased the methylation at SNP-420 and increased RETN messenger RNA. SNP+1263 (rs3745369), located in the 3' untranslated region of RETN, was also associated with methylation at SNP-420. In addition, highly sensitive C-reactive protein was inversely associated with methylation at SNP-420 in the C/C genotype, whereas body mass index was positively associated.CONCLUSIONSPlasma resistin was inversely associated with the extent of methylation at SNP-420 mainly dependent on the SNP-420 genotype. The association can also be explained partially independent of SNP-420 genotypes. SNP-420 could have dual, genetic and epigenetic effects on plasma resistin. Methylation at RETN SNP–420 was inversely associated with plasma resistin dependent and independent of SNP–420 genotypes in the general Japanese population.AbstractContext:We previously reported that single nucleotide polymorphism (SNP)–420 C>G (rs1862513) in the promoter region of RETN was associated with type 2 diabetes. Plasma resistin was tightly correlated with SNP–420 genotypes. SNP–420 is a CpG-SNP affecting the sequence of cytosine–phosphate–guanine dinucleotides.Objective:To examine whether methylation at SNP–420 affects plasma resistin, we analyzed plasma resistin and methylation at RETN SNP–420.Design and Methods:Genomic DNA was extracted from peripheral white blood cells in 2078 Japanese subjects. Quantification of the methylation was performed by pyrosequencing after DNA bisulfite conversion.Results:Methylation at SNP–420 was highest in the C/C genotype (36.9 ± 5.7%), followed by C/G (21.4 ± 3.5%) and G/G (2.9 ± 1.4%; P < 0.001). When assessed in each genotype, methylation at SNP–420 was inversely associated with plasma resistin in the C/C (β = –0.134, P < 0.001) or C/G (β = –0.227, P < 0.001) genotype. In THP-1 human monocytes intrinsically having the C/C genotype, a demethylating reagent, 5-aza-dC, decreased the methylation at SNP–420 and increased RETN messenger RNA. SNP+1263 (rs3745369), located in the 3′ untranslated region of RETN, was also associated with methylation at SNP–420. In addition, highly sensitive C-reactive protein was inversely associated with methylation at SNP–420 in the C/C genotype, whereas body mass index was positively associated.Conclusions:Plasma resistin was inversely associated with the extent of methylation at SNP–420 mainly dependent on the SNP–420 genotype. The association can also be explained partially independent of SNP–420 genotypes. SNP–420 could have dual, genetic and epigenetic effects on plasma resistin. Methylation at RETN SNP-420 was inversely associated with plasma resistin dependent and independent of SNP-420 genotypes in the general Japanese population. Abstract We previously reported that single nucleotide polymorphism (SNP)-420 C>G (rs1862513) in the promoter region of RETN was associated with type 2 diabetes. Plasma resistin was tightly correlated with SNP-420 genotypes. SNP-420 is a CpG-SNP affecting the sequence of cytosine-phosphate-guanine dinucleotides. To examine whether methylation at SNP-420 affects plasma resistin, we analyzed plasma resistin and methylation at RETN SNP-420. Genomic DNA was extracted from peripheral white blood cells in 2078 Japanese subjects. Quantification of the methylation was performed by pyrosequencing after DNA bisulfite conversion. Methylation at SNP-420 was highest in the C/C genotype (36.9 ± 5.7%), followed by C/G (21.4 ± 3.5%) and G/G (2.9 ± 1.4%; P < 0.001). When assessed in each genotype, methylation at SNP-420 was inversely associated with plasma resistin in the C/C (β = -0.134, P < 0.001) or C/G (β = -0.227, P < 0.001) genotype. In THP-1 human monocytes intrinsically having the C/C genotype, a demethylating reagent, 5-aza-dC, decreased the methylation at SNP-420 and increased RETN messenger RNA. SNP+1263 (rs3745369), located in the 3' untranslated region of RETN, was also associated with methylation at SNP-420. In addition, highly sensitive C-reactive protein was inversely associated with methylation at SNP-420 in the C/C genotype, whereas body mass index was positively associated. Plasma resistin was inversely associated with the extent of methylation at SNP-420 mainly dependent on the SNP-420 genotype. The association can also be explained partially independent of SNP-420 genotypes. SNP-420 could have dual, genetic and epigenetic effects on plasma resistin. We previously reported that single nucleotide polymorphism (SNP)-420 C>G (rs1862513) in the promoter region of RETN was associated with type 2 diabetes. Plasma resistin was tightly correlated with SNP-420 genotypes. SNP-420 is a CpG-SNP affecting the sequence of cytosine-phosphate-guanine dinucleotides. To examine whether methylation at SNP-420 affects plasma resistin, we analyzed plasma resistin and methylation at RETN SNP-420. Genomic DNA was extracted from peripheral white blood cells in 2078 Japanese subjects. Quantification of the methylation was performed by pyrosequencing after DNA bisulfite conversion. Methylation at SNP-420 was highest in the C/C genotype (36.9 ± 5.7%), followed by C/G (21.4 ± 3.5%) and G/G (2.9 ± 1.4%; P < 0.001). When assessed in each genotype, methylation at SNP-420 was inversely associated with plasma resistin in the C/C (β = -0.134, P < 0.001) or C/G (β = -0.227, P < 0.001) genotype. In THP-1 human monocytes intrinsically having the C/C genotype, a demethylating reagent, 5-aza-dC, decreased the methylation at SNP-420 and increased RETN messenger RNA. SNP+1263 (rs3745369), located in the 3' untranslated region of RETN, was also associated with methylation at SNP-420. In addition, highly sensitive C-reactive protein was inversely associated with methylation at SNP-420 in the C/C genotype, whereas body mass index was positively associated. Plasma resistin was inversely associated with the extent of methylation at SNP-420 mainly dependent on the SNP-420 genotype. The association can also be explained partially independent of SNP-420 genotypes. SNP-420 could have dual, genetic and epigenetic effects on plasma resistin. |
| Author | Kohara, Katsuhiko Nishida, Wataru Nishimiya, Tatsuya Kawamoto, Ryuichi Onuma, Hiroshi Ohashi, Jun Ochi, Masaaki Tabara, Yasuharu Takata, Yasunori Miki, Tetsuro Ohyagi, Yasumasa Osawa, Haruhiko Kawamura, Ryoichi |
| AuthorAffiliation | 1Departments of Diabetes and Molecular Genetics, 2Geriatric Medicine, and 3Community Medicine, Ehime University Graduate School of Medicine, Ehime 791-0295, Japan; 4Center for Genomic Medicine, Kyoto University Graduate School of Medicine, Kyoto 606-8507, Japan; and 5Department of Biological Sciences, Graduate School of Science, The University of Tokyo, Tokyo 113-8654, Japan |
| AuthorAffiliation_xml | – name: 1Departments of Diabetes and Molecular Genetics, 2Geriatric Medicine, and 3Community Medicine, Ehime University Graduate School of Medicine, Ehime 791-0295, Japan; 4Center for Genomic Medicine, Kyoto University Graduate School of Medicine, Kyoto 606-8507, Japan; and 5Department of Biological Sciences, Graduate School of Science, The University of Tokyo, Tokyo 113-8654, Japan |
| Author_xml | – sequence: 1 givenname: Hiroshi surname: Onuma fullname: Onuma, Hiroshi email: harosawa@m.ehime-u.ac.jp organization: 1Departments of Diabetes and Molecular Genetics – sequence: 2 givenname: Yasuharu surname: Tabara fullname: Tabara, Yasuharu organization: 4Center for Genomic Medicine, Kyoto University Graduate School of Medicine, Kyoto 606-8507, Japan; and – sequence: 3 givenname: Ryoichi surname: Kawamura fullname: Kawamura, Ryoichi organization: 1Departments of Diabetes and Molecular Genetics – sequence: 4 givenname: Jun surname: Ohashi fullname: Ohashi, Jun organization: 5Department of Biological Sciences, Graduate School of Science, The University of Tokyo, Tokyo 113-8654, Japan – sequence: 5 givenname: Wataru surname: Nishida fullname: Nishida, Wataru organization: 1Departments of Diabetes and Molecular Genetics – sequence: 6 givenname: Yasunori surname: Takata fullname: Takata, Yasunori organization: 1Departments of Diabetes and Molecular Genetics – sequence: 7 givenname: Masaaki surname: Ochi fullname: Ochi, Masaaki organization: 1Departments of Diabetes and Molecular Genetics – sequence: 8 givenname: Tatsuya surname: Nishimiya fullname: Nishimiya, Tatsuya organization: 1Departments of Diabetes and Molecular Genetics – sequence: 9 givenname: Yasumasa surname: Ohyagi fullname: Ohyagi, Yasumasa organization: 2Geriatric Medicine, and – sequence: 10 givenname: Ryuichi surname: Kawamoto fullname: Kawamoto, Ryuichi organization: 3Community Medicine, Ehime University Graduate School of Medicine, Ehime 791-0295, Japan – sequence: 11 givenname: Katsuhiko surname: Kohara fullname: Kohara, Katsuhiko organization: 2Geriatric Medicine, and – sequence: 12 givenname: Tetsuro surname: Miki fullname: Miki, Tetsuro organization: 2Geriatric Medicine, and – sequence: 13 givenname: Haruhiko surname: Osawa fullname: Osawa, Haruhiko organization: 1Departments of Diabetes and Molecular Genetics |
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| CitedBy_id | crossref_primary_10_1089_gtmb_2017_0212 crossref_primary_10_3390_ijms231911813 crossref_primary_10_1038_s41598_019_51592_0 crossref_primary_10_3390_nu14235092 crossref_primary_10_1007_s13167_019_00178_x crossref_primary_10_20960_nh_04206 crossref_primary_10_1097_MD_0000000000009485 crossref_primary_10_1038_s41598_024_84142_4 crossref_primary_10_1038_s41398_018_0205_8 crossref_primary_10_3390_nu14091789 crossref_primary_10_1016_j_ygeno_2018_06_005 crossref_primary_10_1002_jcp_29887 crossref_primary_10_1016_j_cca_2020_11_010 |
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| Snippet | Methylation at RETN SNP–420 was inversely associated with plasma resistin dependent and independent of SNP–420 genotypes in the general Japanese... We previously reported that single nucleotide polymorphism (SNP)-420 C>G (rs1862513) in the promoter region of RETN was associated with type 2 diabetes. Plasma... Methylation at RETN SNP-420 was inversely associated with plasma resistin dependent and independent of SNP-420 genotypes in the general Japanese population.... Context:We previously reported that single nucleotide polymorphism (SNP)–420 C>G (rs1862513) in the promoter region of RETN was associated with type 2... CONTEXTWe previously reported that single nucleotide polymorphism (SNP)-420 C>G (rs1862513) in the promoter region of RETN was associated with type 2 diabetes.... |
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| SubjectTerms | 3' Untranslated regions Aged Asians - genetics Azacytidine Bisulfite Body Mass Index C-reactive protein C-Reactive Protein - metabolism Cell Line CpG Islands Cytosine Deoxyribonucleic acid Diabetes mellitus Diabetes mellitus (non-insulin dependent) Diabetes Mellitus, Type 2 - genetics DNA DNA Methylation Epigenesis, Genetic - genetics Epigenetics Female Gene polymorphism Genotype Genotype & phenotype Genotypes Guanine Humans Japan Leukocytes Male Middle Aged Monocytes mRNA Nucleotide sequence Plasma Polymorphism Polymorphism, Single Nucleotide Resistin - blood Resistin - genetics RNA, Messenger - metabolism Single-nucleotide polymorphism |
| Title | Dual Effects of a RETN Single Nucleotide Polymorphism (SNP) at –420 on Plasma Resistin: Genotype and DNA Methylation |
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