CoBRA: Containerized Bioinformatics Workflow for Reproducible ChIP/ATAC-seq Analysis

Chromatin immunoprecipitation sequencing (ChIP-seq) and the Assay for Transposase-Accessible Chromatin with high-throughput sequencing (ATAC-seq) have become essential technologies to effectively measure protein–DNA interactions and chromatin accessibility. However, there is a need for a scalable an...

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Bibliographic Details
Published in:Genomics, proteomics & bioinformatics Vol. 19; no. 4; pp. 652 - 661
Main Authors: Qiu, Xintao, Feit, Avery S., Feiglin, Ariel, Xie, Yingtian, Kesten, Nikolas, Taing, Len, Perkins, Joseph, Gu, Shengqing, Li, Yihao, Cejas, Paloma, Zhou, Ningxuan, Jeselsohn, Rinath, Brown, Myles, Shirley Liu, X., Long, Henry W.
Format: Journal Article
Language:English
Published: China Elsevier B.V 01.08.2021
Albert Einstein College of Medicine,Bronx,NY 10461,USA%Department of Biomedical Informatics,Harvard Medical School,Boston,MA 02215,USA%Center for Functional Cancer Epigenetics,Dana-Farber Cancer Institute,Boston,MA 02215,USA%Center for Functional Cancer Epigenetics,Dana-Farber Cancer Institute,Boston,MA 02215,USA
Department of Data Sciences,Dana Farber Cancer Institute,Harvard T.H.Chan School of Public Health,Boston,MA 02215,USA%Department of Data Sciences,Dana Farber Cancer Institute,Harvard T.H.Chan School of Public Health,Boston,MA 02215,USA%Department of Medical Oncology,Dana-Farber Cancer Institute,Harvard Medical School,Boston,MA 02215,USA
Center for Functional Cancer Epigenetics,Dana-Farber Cancer Institute,Boston,MA 02215,USA
Department of Medical Oncology,Dana-Farber Cancer Institute,Harvard Medical School,Boston,MA 02215,USA%Department of Medical Oncology,Dana-Farber Cancer Institute,Harvard Medical School,Boston,MA 02215,USA
Elsevier
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ISSN:1672-0229, 2210-3244, 2210-3244
Online Access:Get full text
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