CoBRA: Containerized Bioinformatics Workflow for Reproducible ChIP/ATAC-seq Analysis

Chromatin immunoprecipitation sequencing (ChIP-seq) and the Assay for Transposase-Accessible Chromatin with high-throughput sequencing (ATAC-seq) have become essential technologies to effectively measure protein–DNA interactions and chromatin accessibility. However, there is a need for a scalable an...

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Vydáno v:	Genomics, proteomics & bioinformatics Ročník 19; číslo 4; s. 652 - 661
Hlavní autoři:	Qiu, Xintao, Feit, Avery S., Feiglin, Ariel, Xie, Yingtian, Kesten, Nikolas, Taing, Len, Perkins, Joseph, Gu, Shengqing, Li, Yihao, Cejas, Paloma, Zhou, Ningxuan, Jeselsohn, Rinath, Brown, Myles, Shirley Liu, X., Long, Henry W.
Médium:	Journal Article
Jazyk:	angličtina
Vydáno:	China Elsevier B.V 01.08.2021 Albert Einstein College of Medicine,Bronx,NY 10461,USA%Department of Biomedical Informatics,Harvard Medical School,Boston,MA 02215,USA%Center for Functional Cancer Epigenetics,Dana-Farber Cancer Institute,Boston,MA 02215,USA%Center for Functional Cancer Epigenetics,Dana-Farber Cancer Institute,Boston,MA 02215,USA Department of Data Sciences,Dana Farber Cancer Institute,Harvard T.H.Chan School of Public Health,Boston,MA 02215,USA%Department of Data Sciences,Dana Farber Cancer Institute,Harvard T.H.Chan School of Public Health,Boston,MA 02215,USA%Department of Medical Oncology,Dana-Farber Cancer Institute,Harvard Medical School,Boston,MA 02215,USA Center for Functional Cancer Epigenetics,Dana-Farber Cancer Institute,Boston,MA 02215,USA Department of Medical Oncology,Dana-Farber Cancer Institute,Harvard Medical School,Boston,MA 02215,USA%Department of Medical Oncology,Dana-Farber Cancer Institute,Harvard Medical School,Boston,MA 02215,USA Elsevier
Témata:	Application Note ATAC-seq bioinformatics ChIP-seq chromatin Chromatin - genetics chromatin immunoprecipitation Chromatin Immunoprecipitation Sequencing Computational Biology DNA Copy Number Variations Docker genomics High-Throughput Nucleotide Sequencing proteomics Sequence Analysis, DNA Snakemake Workflow ChIP-seq Snakemake Workflow Docker ATAC-seq
ISSN:	1672-0229, 2210-3244, 2210-3244
On-line přístup:	Získat plný text
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