Zebrafish information network, the knowledgebase for Danio rerio research

Abstract The Zebrafish Information Network (zfin.org) is the central repository for Danio rerio genetic and genomic data. The Zebrafish Information Network has served the zebrafish research community since 1994, expertly curating, integrating, and displaying zebrafish data. Key data types available...

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Veröffentlicht in:	Genetics (Austin) Jg. 220; H. 4
Hauptverfasser:	Bradford, Yvonne M, Van Slyke, Ceri E, Ruzicka, Leyla, Singer, Amy, Eagle, Anne, Fashena, David, Howe, Douglas G, Frazer, Ken, Martin, Ryan, Paddock, Holly, Pich, Christian, Ramachandran, Sridhar, Westerfield, Monte
Format:	Journal Article
Sprache:	Englisch
Veröffentlicht:	United States Oxford University Press 04.04.2022
Schlagworte:	Animals Databases, Genetic Gene Ontology Genome Genomics Zebrafish - genetics knowledgebase database zebrafish Danio rerio
ISSN:	1943-2631, 1943-2631
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Abstract	Abstract The Zebrafish Information Network (zfin.org) is the central repository for Danio rerio genetic and genomic data. The Zebrafish Information Network has served the zebrafish research community since 1994, expertly curating, integrating, and displaying zebrafish data. Key data types available at the Zebrafish Information Network include, but are not limited to, genes, alleles, human disease models, gene expression, phenotype, and gene function. The Zebrafish Information Network makes zebrafish research data Findable, Accessible, Interoperable, and Reusable through nomenclature, curatorial and annotation activities, web interfaces, and data downloads. Recently, the Zebrafish Information Network and 6 other model organism knowledgebases have collaborated to form the Alliance of Genome Resources, aiming to develop sustainable genome information resources that enable the use of model organisms to understand the genetic and genomic basis of human biology and disease. Here, we provide an overview of the data available at the Zebrafish Information Network including recent updates to the gene page to provide access to single-cell RNA sequencing data, links to Alliance web pages, ribbon diagrams to summarize the biological systems and Gene Ontology terms that have annotations, and data integration with the Alliance of Genome Resources.
AbstractList	Abstract The Zebrafish Information Network (zfin.org) is the central repository for Danio rerio genetic and genomic data. The Zebrafish Information Network has served the zebrafish research community since 1994, expertly curating, integrating, and displaying zebrafish data. Key data types available at the Zebrafish Information Network include, but are not limited to, genes, alleles, human disease models, gene expression, phenotype, and gene function. The Zebrafish Information Network makes zebrafish research data Findable, Accessible, Interoperable, and Reusable through nomenclature, curatorial and annotation activities, web interfaces, and data downloads. Recently, the Zebrafish Information Network and 6 other model organism knowledgebases have collaborated to form the Alliance of Genome Resources, aiming to develop sustainable genome information resources that enable the use of model organisms to understand the genetic and genomic basis of human biology and disease. Here, we provide an overview of the data available at the Zebrafish Information Network including recent updates to the gene page to provide access to single-cell RNA sequencing data, links to Alliance web pages, ribbon diagrams to summarize the biological systems and Gene Ontology terms that have annotations, and data integration with the Alliance of Genome Resources. The Zebrafish Information Network (zfin.org) is the central repository for Danio rerio genetic and genomic data. The Zebrafish Information Network has served the zebrafish research community since 1994, expertly curating, integrating, and displaying zebrafish data. Key data types available at the Zebrafish Information Network include, but are not limited to, genes, alleles, human disease models, gene expression, phenotype, and gene function. The Zebrafish Information Network makes zebrafish research data Findable, Accessible, Interoperable, and Reusable through nomenclature, curatorial and annotation activities, web interfaces, and data downloads. Recently, the Zebrafish Information Network and 6 other model organism knowledgebases have collaborated to form the Alliance of Genome Resources, aiming to develop sustainable genome information resources that enable the use of model organisms to understand the genetic and genomic basis of human biology and disease. Here, we provide an overview of the data available at the Zebrafish Information Network including recent updates to the gene page to provide access to single-cell RNA sequencing data, links to Alliance web pages, ribbon diagrams to summarize the biological systems and Gene Ontology terms that have annotations, and data integration with the Alliance of Genome Resources.The Zebrafish Information Network (zfin.org) is the central repository for Danio rerio genetic and genomic data. The Zebrafish Information Network has served the zebrafish research community since 1994, expertly curating, integrating, and displaying zebrafish data. Key data types available at the Zebrafish Information Network include, but are not limited to, genes, alleles, human disease models, gene expression, phenotype, and gene function. The Zebrafish Information Network makes zebrafish research data Findable, Accessible, Interoperable, and Reusable through nomenclature, curatorial and annotation activities, web interfaces, and data downloads. Recently, the Zebrafish Information Network and 6 other model organism knowledgebases have collaborated to form the Alliance of Genome Resources, aiming to develop sustainable genome information resources that enable the use of model organisms to understand the genetic and genomic basis of human biology and disease. Here, we provide an overview of the data available at the Zebrafish Information Network including recent updates to the gene page to provide access to single-cell RNA sequencing data, links to Alliance web pages, ribbon diagrams to summarize the biological systems and Gene Ontology terms that have annotations, and data integration with the Alliance of Genome Resources. The Zebrafish Information Network (zfin.org) is the central repository for Danio rerio genetic and genomic data. The Zebrafish Information Network has served the zebrafish research community since 1994, expertly curating, integrating, and displaying zebrafish data. Key data types available at the Zebrafish Information Network include, but are not limited to, genes, alleles, human disease models, gene expression, phenotype, and gene function. The Zebrafish Information Network makes zebrafish research data Findable, Accessible, Interoperable, and Reusable through nomenclature, curatorial and annotation activities, web interfaces, and data downloads. Recently, the Zebrafish Information Network and 6 other model organism knowledgebases have collaborated to form the Alliance of Genome Resources, aiming to develop sustainable genome information resources that enable the use of model organisms to understand the genetic and genomic basis of human biology and disease. Here, we provide an overview of the data available at the Zebrafish Information Network including recent updates to the gene page to provide access to single-cell RNA sequencing data, links to Alliance web pages, ribbon diagrams to summarize the biological systems and Gene Ontology terms that have annotations, and data integration with the Alliance of Genome Resources.
Author	Singer, Amy Ramachandran, Sridhar Paddock, Holly Van Slyke, Ceri E Westerfield, Monte Eagle, Anne Fashena, David Martin, Ryan Howe, Douglas G Frazer, Ken Pich, Christian Ruzicka, Leyla Bradford, Yvonne M
Author_xml	– sequence: 1 givenname: Yvonne M orcidid: 0000-0002-9900-7880 surname: Bradford fullname: Bradford, Yvonne M email: ybradford@zfin.org organization: The Institute of Neuroscience, University of Oregon, Eugene, OR 97403-1254, USA – sequence: 2 givenname: Ceri E orcidid: 0000-0002-2244-7917 surname: Van Slyke fullname: Van Slyke, Ceri E organization: The Institute of Neuroscience, University of Oregon, Eugene, OR 97403-1254, USA – sequence: 3 givenname: Leyla orcidid: 0000-0002-1009-339X surname: Ruzicka fullname: Ruzicka, Leyla organization: The Institute of Neuroscience, University of Oregon, Eugene, OR 97403-1254, USA – sequence: 4 givenname: Amy orcidid: 0000-0002-9663-3237 surname: Singer fullname: Singer, Amy organization: The Institute of Neuroscience, University of Oregon, Eugene, OR 97403-1254, USA – sequence: 5 givenname: Anne orcidid: 0000-0002-6271-5250 surname: Eagle fullname: Eagle, Anne organization: The Institute of Neuroscience, University of Oregon, Eugene, OR 97403-1254, USA – sequence: 6 givenname: David orcidid: 0000-0001-9656-0683 surname: Fashena fullname: Fashena, David organization: The Institute of Neuroscience, University of Oregon, Eugene, OR 97403-1254, USA – sequence: 7 givenname: Douglas G orcidid: 0000-0001-5831-7439 surname: Howe fullname: Howe, Douglas G organization: The Institute of Neuroscience, University of Oregon, Eugene, OR 97403-1254, USA – sequence: 8 givenname: Ken surname: Frazer fullname: Frazer, Ken organization: The Institute of Neuroscience, University of Oregon, Eugene, OR 97403-1254, USA – sequence: 9 givenname: Ryan surname: Martin fullname: Martin, Ryan organization: The Institute of Neuroscience, University of Oregon, Eugene, OR 97403-1254, USA – sequence: 10 givenname: Holly surname: Paddock fullname: Paddock, Holly organization: The Institute of Neuroscience, University of Oregon, Eugene, OR 97403-1254, USA – sequence: 11 givenname: Christian orcidid: 0000-0001-5334-4542 surname: Pich fullname: Pich, Christian organization: The Institute of Neuroscience, University of Oregon, Eugene, OR 97403-1254, USA – sequence: 12 givenname: Sridhar orcidid: 0000-0002-2246-3722 surname: Ramachandran fullname: Ramachandran, Sridhar organization: The Institute of Neuroscience, University of Oregon, Eugene, OR 97403-1254, USA – sequence: 13 givenname: Monte orcidid: 0000-0003-1187-7839 surname: Westerfield fullname: Westerfield, Monte organization: The Institute of Neuroscience, University of Oregon, Eugene, OR 97403-1254, USA
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Snippet	Abstract The Zebrafish Information Network (zfin.org) is the central repository for Danio rerio genetic and genomic data. The Zebrafish Information Network has... The Zebrafish Information Network (zfin.org) is the central repository for Danio rerio genetic and genomic data. The Zebrafish Information Network has served...
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SubjectTerms	Animals Databases, Genetic Gene Ontology Genome Genomics Zebrafish - genetics
Title	Zebrafish information network, the knowledgebase for Danio rerio research
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