Design and Validation of a PLC-Controlled Morbidostat for Investigating Bacterial Drug Resistance
During adaptive laboratory evolution experiments, any unexpected interruption in data monitoring or control could lead to the loss of valuable experimental data and compromise the integrity of the entire experiment. Most homemade mini-bioreactors are built employing microcontrollers such as Arduino....
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| Vydáno v: | Bioengineering (Basel) Ročník 11; číslo 8; s. 815 |
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01.08.2024
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| Abstract | During adaptive laboratory evolution experiments, any unexpected interruption in data monitoring or control could lead to the loss of valuable experimental data and compromise the integrity of the entire experiment. Most homemade mini-bioreactors are built employing microcontrollers such as Arduino. Although affordable, these platforms lack the robustness of the programmable logic controller (PLC), which enhances the safety and robustness of the control process. Here, we describe the design and validation of a PLC-controlled morbidostat, an innovative automated continuous-culture mini-bioreactor specifically created to study the evolutionary pathways to drug resistance in microorganisms. This morbidostat includes several improvements, both at the hardware and software level, for better online monitoring and a more robust operation. The device was validated employing Escherichia coli, exploring its adaptive evolution in the presence of didecyldimethylammonium chloride (DDAC), a quaternary ammonium compound widely used for its antimicrobial properties. E. coli was subjected to increasing concentrations of DDAC over 3 days. Our results demonstrated a significant increase in DDAC susceptibility, with evolved populations exhibiting substantial changes in their growth after exposure. |
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| AbstractList | During adaptive laboratory evolution experiments, any unexpected interruption in data monitoring or control could lead to the loss of valuable experimental data and compromise the integrity of the entire experiment. Most homemade mini-bioreactors are built employing microcontrollers such as Arduino. Although affordable, these platforms lack the robustness of the programmable logic controller (PLC), which enhances the safety and robustness of the control process. Here, we describe the design and validation of a PLC-controlled morbidostat, an innovative automated continuous-culture mini-bioreactor specifically created to study the evolutionary pathways to drug resistance in microorganisms. This morbidostat includes several improvements, both at the hardware and software level, for better online monitoring and a more robust operation. The device was validated employing
, exploring its adaptive evolution in the presence of didecyldimethylammonium chloride (DDAC), a quaternary ammonium compound widely used for its antimicrobial properties.
was subjected to increasing concentrations of DDAC over 3 days. Our results demonstrated a significant increase in DDAC susceptibility, with evolved populations exhibiting substantial changes in their growth after exposure. During adaptive laboratory evolution experiments, any unexpected interruption in data monitoring or control could lead to the loss of valuable experimental data and compromise the integrity of the entire experiment. Most homemade mini-bioreactors are built employing microcontrollers such as Arduino. Although affordable, these platforms lack the robustness of the programmable logic controller (PLC), which enhances the safety and robustness of the control process. Here, we describe the design and validation of a PLC-controlled morbidostat, an innovative automated continuous-culture mini-bioreactor specifically created to study the evolutionary pathways to drug resistance in microorganisms. This morbidostat includes several improvements, both at the hardware and software level, for better online monitoring and a more robust operation. The device was validated employing Escherichia coli, exploring its adaptive evolution in the presence of didecyldimethylammonium chloride (DDAC), a quaternary ammonium compound widely used for its antimicrobial properties. E. coli was subjected to increasing concentrations of DDAC over 3 days. Our results demonstrated a significant increase in DDAC susceptibility, with evolved populations exhibiting substantial changes in their growth after exposure. During adaptive laboratory evolution experiments, any unexpected interruption in data monitoring or control could lead to the loss of valuable experimental data and compromise the integrity of the entire experiment. Most homemade mini-bioreactors are built employing microcontrollers such as Arduino. Although affordable, these platforms lack the robustness of the programmable logic controller (PLC), which enhances the safety and robustness of the control process. Here, we describe the design and validation of a PLC-controlled morbidostat, an innovative automated continuous-culture mini-bioreactor specifically created to study the evolutionary pathways to drug resistance in microorganisms. This morbidostat includes several improvements, both at the hardware and software level, for better online monitoring and a more robust operation. The device was validated employing Escherichia coli, exploring its adaptive evolution in the presence of didecyldimethylammonium chloride (DDAC), a quaternary ammonium compound widely used for its antimicrobial properties. E. coli was subjected to increasing concentrations of DDAC over 3 days. Our results demonstrated a significant increase in DDAC susceptibility, with evolved populations exhibiting substantial changes in their growth after exposure.During adaptive laboratory evolution experiments, any unexpected interruption in data monitoring or control could lead to the loss of valuable experimental data and compromise the integrity of the entire experiment. Most homemade mini-bioreactors are built employing microcontrollers such as Arduino. Although affordable, these platforms lack the robustness of the programmable logic controller (PLC), which enhances the safety and robustness of the control process. Here, we describe the design and validation of a PLC-controlled morbidostat, an innovative automated continuous-culture mini-bioreactor specifically created to study the evolutionary pathways to drug resistance in microorganisms. This morbidostat includes several improvements, both at the hardware and software level, for better online monitoring and a more robust operation. The device was validated employing Escherichia coli, exploring its adaptive evolution in the presence of didecyldimethylammonium chloride (DDAC), a quaternary ammonium compound widely used for its antimicrobial properties. E. coli was subjected to increasing concentrations of DDAC over 3 days. Our results demonstrated a significant increase in DDAC susceptibility, with evolved populations exhibiting substantial changes in their growth after exposure. |
| Audience | Academic |
| Author | Romanenko, Andrey García, Míriam R. Vázquez, José A. Pedreira, Adrián |
| AuthorAffiliation | 1 Biosystems and Bioprocess Engineering Group (Bio2Eng), Spanish National Research Council (IIM-CSIC), Rúa Eduardo Cabello 6, 36208 Vigo, Spain; apedreira@iim.csic.es 3 CIENGIS Lda, Rua Pedro Nunes, 3030-199 Coimbra, Portugal; andrey.romanenko@ciengis.com 2 Group of Recycling and Valorization of Waste Materials (REVAL), Spanish National Research Council (IIM-CSIC), Rúa Eduardo Cabello 6, 36208 Vigo, Spain; jvazquez@iim.csic.es |
| AuthorAffiliation_xml | – name: 2 Group of Recycling and Valorization of Waste Materials (REVAL), Spanish National Research Council (IIM-CSIC), Rúa Eduardo Cabello 6, 36208 Vigo, Spain; jvazquez@iim.csic.es – name: 1 Biosystems and Bioprocess Engineering Group (Bio2Eng), Spanish National Research Council (IIM-CSIC), Rúa Eduardo Cabello 6, 36208 Vigo, Spain; apedreira@iim.csic.es – name: 3 CIENGIS Lda, Rua Pedro Nunes, 3030-199 Coimbra, Portugal; andrey.romanenko@ciengis.com |
| Author_xml | – sequence: 1 givenname: Adrián orcidid: 0000-0002-7843-4111 surname: Pedreira fullname: Pedreira, Adrián – sequence: 2 givenname: José A. orcidid: 0000-0002-1122-4726 surname: Vázquez fullname: Vázquez, José A. – sequence: 3 givenname: Andrey orcidid: 0000-0003-0355-1580 surname: Romanenko fullname: Romanenko, Andrey – sequence: 4 givenname: Míriam R. orcidid: 0000-0001-9538-6388 surname: García fullname: García, Míriam R. |
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| Cites_doi | 10.1038/nprot.2013.021 10.1128/AAC.00043-17 10.2514/6.2019-0502 10.1016/S0141-0229(02)00109-6 10.2139/ssrn.4825402 10.3389/fmicb.2021.776909 10.7554/eLife.32976 10.3390/foods13121831 10.1017/CBO9780511808265 10.1145/2593458.2593469 10.3389/fmicb.2022.758237 10.12688/f1000research.18861.2 10.3389/fmicb.2017.02626 10.1371/journal.pbio.1002299 |
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| Keywords | programmable logic controller (PLC) didecyldimethylammonium chloride bioreactor Escherichia coli adaptive laboratory evolution (ALE) morbidostat |
| Language | English |
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| References | Toprak (ref_2) 2013; 8 (ref_12) 2018; 27 ref_14 Murado (ref_15) 2002; 31 ref_13 ref_23 Willmann (ref_7) 2017; 61 ref_11 ref_22 Coates (ref_20) 2018; 7 ref_1 Javed (ref_8) 2018; 73 ref_3 ref_19 ref_18 Ziv (ref_10) 2013; 80 ref_17 ref_16 ref_9 Verhoeven (ref_4) 2020; 8 ref_5 Leyn (ref_21) 2021; 7 ref_6 |
| References_xml | – volume: 8 start-page: 555 year: 2013 ident: ref_2 article-title: Building a morbidostat: An automated continuous-culture device for studying bacterial drug resistance under dynamically sustained drug inhibition publication-title: Nat. Protoc. doi: 10.1038/nprot.2013.021 – volume: 61 start-page: e00043-17 year: 2017 ident: ref_7 article-title: Rapid and Consistent Evolution of Colistin Resistance in Extensively Drug-Resistant Pseudomonas aeruginosa during Morbidostat Culture publication-title: Antimicrob. Agents Chemother. doi: 10.1128/AAC.00043-17 – ident: ref_6 – ident: ref_9 doi: 10.2514/6.2019-0502 – volume: 31 start-page: 439 year: 2002 ident: ref_15 article-title: Dose–response relationships: An overview, a generative model and its application to the verification of descriptive models publication-title: Enzym. Microb. Technol. doi: 10.1016/S0141-0229(02)00109-6 – ident: ref_11 – ident: ref_22 doi: 10.2139/ssrn.4825402 – ident: ref_17 doi: 10.3389/fmicb.2021.776909 – volume: 7 start-page: e32976 year: 2018 ident: ref_20 article-title: Antibiotic-induced population fluctuations and stochastic clearance of bacteria publication-title: eLife doi: 10.7554/eLife.32976 – volume: 73 start-page: 3368 year: 2018 ident: ref_8 article-title: Colistin susceptibility test evaluation of multiple-resistance-level Pseudomonas aeruginosa isolates generated in a morbidostat device publication-title: J. Antimicrob. Chemother. – ident: ref_14 doi: 10.3390/foods13121831 – ident: ref_16 doi: 10.1017/CBO9780511808265 – ident: ref_13 – ident: ref_5 doi: 10.1145/2593458.2593469 – ident: ref_23 doi: 10.3389/fmicb.2022.758237 – ident: ref_1 – ident: ref_18 – volume: 27 start-page: 1668 year: 2018 ident: ref_12 article-title: Output feedback linearization of turbidostats after time scaling publication-title: IEEE Trans. Control Syst. Technol. – volume: 8 start-page: 560 year: 2020 ident: ref_4 article-title: Construction and optimization of a ‘NG Morbidostat’—An automated continuous-culture device for studying the pathways towards antibiotic resistance in Neisseria gonorrhoeae publication-title: F1000Research doi: 10.12688/f1000research.18861.2 – ident: ref_19 doi: 10.3389/fmicb.2017.02626 – ident: ref_3 doi: 10.1371/journal.pbio.1002299 – volume: 7 start-page: 000553 year: 2021 ident: ref_21 article-title: Experimental evolution in morbidostat reveals converging genomic trajectories on the path to triclosan resistance publication-title: Microb. Genom. – volume: 80 start-page: e50168 year: 2013 ident: ref_10 article-title: The Use of Chemostats in Microbial Systems Biology publication-title: JOVE |
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| SubjectTerms | adaptive laboratory evolution (ALE) Ammonium compounds Analysis Antimicrobial agents bioreactor Bioreactors Closed loop systems Control algorithms Controllers Design didecyldimethylammonium chloride Drug development Drug resistance Drug resistance in microorganisms E coli Escherichia coli Evolution Evolution & development International economic relations Investigations Monitoring morbidostat Operating systems Process controls programmable logic controller (PLC) Programmable logic controllers Quaternary ammonium salts Robust control Scientific equipment and supplies industry Software User interface |
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| Title | Design and Validation of a PLC-Controlled Morbidostat for Investigating Bacterial Drug Resistance |
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