Draft genome sequence of Yersinia pestis strain 2501, an isolate from the great gerbil plague focus in Xinjiang, China

We deciphered the genome of Yersinia pestis strain 2501, isolated from the Junggar Basin, a newly discovered great gerbil plague focus in Xinjiang, China. The total length of assembly was 4,597,322 bp, and 4,265 coding sequences were predicted within the genome. It is the first Y. pestis genome from...

Ausführliche Beschreibung

Gespeichert in:
Bibliographische Detailangaben
Veröffentlicht in:Journal of bacteriology Jg. 194; H. 19; S. 5447
Hauptverfasser: Sun, Surong, Yang, Xianwei, Yuan, Yanting, Dai, Xiang, Yan, Yanfeng, Cao, Hanli, Luo, Tao, Guo, Rong, Wang, Xinhui, Song, Yajun, Yang, Ruifu, Zhang, Yujiang, Cui, Yujun
Format: Journal Article
Sprache:Englisch
Veröffentlicht: United States 01.10.2012
Schlagworte:
ISSN:1098-5530, 1098-5530
Online-Zugang:Weitere Angaben
Tags: Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
Abstract We deciphered the genome of Yersinia pestis strain 2501, isolated from the Junggar Basin, a newly discovered great gerbil plague focus in Xinjiang, China. The total length of assembly was 4,597,322 bp, and 4,265 coding sequences were predicted within the genome. It is the first Y. pestis genome from this plague focus.
AbstractList We deciphered the genome of Yersinia pestis strain 2501, isolated from the Junggar Basin, a newly discovered great gerbil plague focus in Xinjiang, China. The total length of assembly was 4,597,322 bp, and 4,265 coding sequences were predicted within the genome. It is the first Y. pestis genome from this plague focus.
We deciphered the genome of Yersinia pestis strain 2501, isolated from the Junggar Basin, a newly discovered great gerbil plague focus in Xinjiang, China. The total length of assembly was 4,597,322 bp, and 4,265 coding sequences were predicted within the genome. It is the first Y. pestis genome from this plague focus.We deciphered the genome of Yersinia pestis strain 2501, isolated from the Junggar Basin, a newly discovered great gerbil plague focus in Xinjiang, China. The total length of assembly was 4,597,322 bp, and 4,265 coding sequences were predicted within the genome. It is the first Y. pestis genome from this plague focus.
Author Yuan, Yanting
Wang, Xinhui
Zhang, Yujiang
Dai, Xiang
Song, Yajun
Luo, Tao
Yan, Yanfeng
Cao, Hanli
Cui, Yujun
Sun, Surong
Yang, Xianwei
Guo, Rong
Yang, Ruifu
Author_xml – sequence: 1
  givenname: Surong
  surname: Sun
  fullname: Sun, Surong
  organization: Xinjiang Key Laboratory of Biological Resources and Genetic Engineering, College of Life Science and Technology, Xinjiang University, Urumqi, People's Republic of China
– sequence: 2
  givenname: Xianwei
  surname: Yang
  fullname: Yang, Xianwei
– sequence: 3
  givenname: Yanting
  surname: Yuan
  fullname: Yuan, Yanting
– sequence: 4
  givenname: Xiang
  surname: Dai
  fullname: Dai, Xiang
– sequence: 5
  givenname: Yanfeng
  surname: Yan
  fullname: Yan, Yanfeng
– sequence: 6
  givenname: Hanli
  surname: Cao
  fullname: Cao, Hanli
– sequence: 7
  givenname: Tao
  surname: Luo
  fullname: Luo, Tao
– sequence: 8
  givenname: Rong
  surname: Guo
  fullname: Guo, Rong
– sequence: 9
  givenname: Xinhui
  surname: Wang
  fullname: Wang, Xinhui
– sequence: 10
  givenname: Yajun
  surname: Song
  fullname: Song, Yajun
– sequence: 11
  givenname: Ruifu
  surname: Yang
  fullname: Yang, Ruifu
– sequence: 12
  givenname: Yujiang
  surname: Zhang
  fullname: Zhang, Yujiang
– sequence: 13
  givenname: Yujun
  surname: Cui
  fullname: Cui, Yujun
BackLink https://www.ncbi.nlm.nih.gov/pubmed/22965078$$D View this record in MEDLINE/PubMed
BookMark eNpNUEtLxDAYDLLiPvTkXXL0sNUkbdLkqOubBS8KeirZ5ms3S5vUpBX891ZcwdMMzANm5mjivAOETim5oJTJy6frC0IpJwllB2hGiZIJ5ymZ_ONTNI9xRwjNMs6O0JQxJTjJ5Qx93gRd9bgG51vAET4GcCVgX-F3CNE6q3EHsbcRxz5o6zDjhC6xdthG3-gecBV8i_st4DqA_mkKG9vgrtH1MIq-HCIeY2_W7ax29RKvttbpY3RY6SbCyR4X6PXu9mX1kKyf7x9XV-uk5CztEyWEkSTnQqalyk2ulZCSckOoYWlqZEV4JgzoXORCl2yTAidGikxJA7kqCVug89_eLvhxWuyL1sYSmkY78EMsKEkVI4JTNlrP9tZh04IpumBbHb6Kv6_YN28FauY
CitedBy_id crossref_primary_10_1016_j_meegid_2015_10_024
crossref_primary_10_1111_tbed_12603
ContentType Journal Article
DBID CGR
CUY
CVF
ECM
EIF
NPM
7X8
DOI 10.1128/JB.01150-12
DatabaseName Medline
MEDLINE
MEDLINE (Ovid)
MEDLINE
MEDLINE
PubMed
MEDLINE - Academic
DatabaseTitle MEDLINE
Medline Complete
MEDLINE with Full Text
PubMed
MEDLINE (Ovid)
MEDLINE - Academic
DatabaseTitleList MEDLINE
MEDLINE - Academic
Database_xml – sequence: 1
  dbid: NPM
  name: PubMed
  url: http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed
  sourceTypes: Index Database
– sequence: 2
  dbid: 7X8
  name: MEDLINE - Academic
  url: https://search.proquest.com/medline
  sourceTypes: Aggregation Database
DeliveryMethod no_fulltext_linktorsrc
Discipline Biology
EISSN 1098-5530
ExternalDocumentID 22965078
Genre Research Support, Non-U.S. Gov't
Journal Article
GeographicLocations China
GeographicLocations_xml – name: China
GroupedDBID ---
-DZ
-~X
.55
.GJ
0R~
186
18M
1VV
29J
2WC
39C
3O-
4.4
53G
5GY
5RE
5VS
79B
85S
8WZ
9M8
A6W
ABPPZ
ABTAH
ACGFO
ACGOD
ACNCT
ACPRK
ADBBV
AENEX
AFFDN
AFFNX
AFRAH
AGCDD
AGVNZ
AI.
AIDAL
AJUXI
ALMA_UNASSIGNED_HOLDINGS
AOIJS
BAWUL
BKOMP
BTFSW
C1A
CGR
CJ0
CS3
CUY
CVF
DIK
DU5
E3Z
EBS
ECM
EIF
EJD
F5P
FRP
GX1
H13
HYE
HZ~
IH2
KQ8
L7B
MVM
NHB
NPM
O9-
OHT
OK1
P-O
P-S
P2P
PQQKQ
QZG
RHI
RNS
RPM
RSF
RXW
TAE
TR2
UHB
UKR
UPT
VH1
W8F
WH7
WHG
WOQ
X7M
Y6R
YQT
YR2
YZZ
ZCA
ZCG
ZGI
ZXP
ZY4
~02
~KM
7X8
AAGFI
ABUFD
ID FETCH-LOGICAL-c523t-966d8075683c97d7a968815d01d233d8f0546dea7676ac2b3e50d86498de79c02
IEDL.DBID 7X8
ISICitedReferencesCount 5
ISICitedReferencesURI http://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=Summon&SrcAuth=ProQuest&DestLinkType=CitingArticles&DestApp=WOS_CPL&KeyUT=000308749700032&url=https%3A%2F%2Fcvtisr.summon.serialssolutions.com%2F%23%21%2Fsearch%3Fho%3Df%26include.ft.matches%3Dt%26l%3Dnull%26q%3D
ISSN 1098-5530
IngestDate Sun Nov 09 10:24:01 EST 2025
Thu Apr 03 07:03:35 EDT 2025
IsDoiOpenAccess false
IsOpenAccess true
IsPeerReviewed true
IsScholarly true
Issue 19
Language English
LinkModel DirectLink
MergedId FETCHMERGED-LOGICAL-c523t-966d8075683c97d7a968815d01d233d8f0546dea7676ac2b3e50d86498de79c02
Notes ObjectType-Article-1
SourceType-Scholarly Journals-1
ObjectType-Feature-2
content type line 23
OpenAccessLink https://jb.asm.org/content/jb/194/19/5447.full.pdf
PMID 22965078
PQID 1039206512
PQPubID 23479
ParticipantIDs proquest_miscellaneous_1039206512
pubmed_primary_22965078
PublicationCentury 2000
PublicationDate 2012-10-01
PublicationDateYYYYMMDD 2012-10-01
PublicationDate_xml – month: 10
  year: 2012
  text: 2012-10-01
  day: 01
PublicationDecade 2010
PublicationPlace United States
PublicationPlace_xml – name: United States
PublicationTitle Journal of bacteriology
PublicationTitleAlternate J Bacteriol
PublicationYear 2012
References 20019144 - Genome Res. 2010 Feb;20(2):265-72
20799946 - BMC Biol. 2010;8:112
15369044 - Wkly Epidemiol Rec. 2004 Aug 13;79(33):301-6
17237039 - Bioinformatics. 2007 Mar 15;23(6):673-9
18612419 - PLoS One. 2008;3(7):e2652
8993858 - Clin Microbiol Rev. 1997 Jan;10(1):35-66
19543392 - PLoS One. 2009;4(6):e6000
18198939 - PLoS Med. 2008 Jan 15;5(1):e3
15084509 - Clin Microbiol Rev. 2004 Apr;17(2):434-64
18686853 - Zhonghua Liu Xing Bing Xue Za Zhi. 2008 Feb;29(2):136-44
18478120 - PLoS One. 2008;3(5):e2166
References_xml – reference: 8993858 - Clin Microbiol Rev. 1997 Jan;10(1):35-66
– reference: 18198939 - PLoS Med. 2008 Jan 15;5(1):e3
– reference: 20019144 - Genome Res. 2010 Feb;20(2):265-72
– reference: 19543392 - PLoS One. 2009;4(6):e6000
– reference: 15369044 - Wkly Epidemiol Rec. 2004 Aug 13;79(33):301-6
– reference: 17237039 - Bioinformatics. 2007 Mar 15;23(6):673-9
– reference: 20799946 - BMC Biol. 2010;8:112
– reference: 18478120 - PLoS One. 2008;3(5):e2166
– reference: 15084509 - Clin Microbiol Rev. 2004 Apr;17(2):434-64
– reference: 18612419 - PLoS One. 2008;3(7):e2652
– reference: 18686853 - Zhonghua Liu Xing Bing Xue Za Zhi. 2008 Feb;29(2):136-44
SSID ssj0014452
Score 2.077203
Snippet We deciphered the genome of Yersinia pestis strain 2501, isolated from the Junggar Basin, a newly discovered great gerbil plague focus in Xinjiang, China. The...
SourceID proquest
pubmed
SourceType Aggregation Database
Index Database
StartPage 5447
SubjectTerms Animals
China - epidemiology
Genome, Bacterial
Gerbillinae
Molecular Sequence Data
Plague - epidemiology
Plague - veterinary
Yersinia pestis - classification
Yersinia pestis - genetics
Title Draft genome sequence of Yersinia pestis strain 2501, an isolate from the great gerbil plague focus in Xinjiang, China
URI https://www.ncbi.nlm.nih.gov/pubmed/22965078
https://www.proquest.com/docview/1039206512
Volume 194
WOSCitedRecordID wos000308749700032&url=https%3A%2F%2Fcvtisr.summon.serialssolutions.com%2F%23%21%2Fsearch%3Fho%3Df%26include.ft.matches%3Dt%26l%3Dnull%26q%3D
hasFullText
inHoldings 1
isFullTextHit
isPrint
link http://cvtisr.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwpV1LS8QwEA4-wYvv94MRPG50-0rSk_hEBJc9KNTTkibpUtF23bqC_96ZtosnQfDSS0lbJl9nvmQm8zF2InWaxjqyPBBS8tD5jqfa8zlJR5N3DL20W4tNyF5PJUncbzfcqrascuoTa0dtS0N75GeUsvQxXnr--eidk2oUZVdbCY1ZNh8glSFUy-QnixCGUZPtjBUneZz2fB665LP7y9OaDHGSovyNW9Yx5nblv1-3ypZbdgkXDRzW2Iwr1tliozf5tcE-r8c6-wDqy_rmYFpFDWUGz7RtVuQaRtR1o4Kqlo4AZC5eB3QBOUIUWSnQaRRAzghDIpv4pHGav8LoVQ8neLM0kwpwWJIXLwi7YQdqee5N9nR783h1x1vhBW5wXfpBHTstNSkWKjCxtFLHQikvsl3P-kFgVYY8T1inpZBCGz8NXNS1SoSxsk7GputvsbmiLNwOAymsdEI6D4lGKE1IwdBqg2FTRxJXb7vseGrQAQKbshW6cOWkGvyYdJdtN7MyGDUdOAYIJGSWUu39YfQ-W8J3-00B3gGbz_C3dodswXyiOcdHNWLw2us_fAPzrshS
linkProvider ProQuest
openUrl ctx_ver=Z39.88-2004&ctx_enc=info%3Aofi%2Fenc%3AUTF-8&rfr_id=info%3Asid%2Fsummon.serialssolutions.com&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Ajournal&rft.genre=article&rft.atitle=Draft+genome+sequence+of+Yersinia+pestis+strain+2501%2C+an+isolate+from+the+great+gerbil+plague+focus+in+Xinjiang%2C+China&rft.jtitle=Journal+of+bacteriology&rft.au=Sun%2C+Surong&rft.au=Yang%2C+Xianwei&rft.au=Yuan%2C+Yanting&rft.au=Dai%2C+Xiang&rft.date=2012-10-01&rft.eissn=1098-5530&rft.volume=194&rft.issue=19&rft.spage=5447&rft_id=info:doi/10.1128%2FJB.01150-12&rft_id=info%3Apmid%2F22965078&rft_id=info%3Apmid%2F22965078&rft.externalDocID=22965078
thumbnail_l http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/lc.gif&issn=1098-5530&client=summon
thumbnail_m http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/mc.gif&issn=1098-5530&client=summon
thumbnail_s http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/sc.gif&issn=1098-5530&client=summon