Lie Markov models with purine/pyrimidine symmetry

Continuous-time Markov chains are a standard tool in phylogenetic inference. If homogeneity is assumed, the chain is formulated by specifying time-independent rates of substitutions between states in the chain. In applications, there are usually extra constraints on the rates, depending on the situa...

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Bibliographic Details
Published in:	Journal of mathematical biology Vol. 70; no. 4; pp. 855 - 891
Main Authors:	Fernández-Sánchez, Jesús, Sumner, Jeremy G., Jarvis, Peter D., Woodhams, Michael D.
Format:	Journal Article Publication
Language:	English
Published:	Berlin/Heidelberg Springer Berlin Heidelberg 01.03.2015 Springer Nature B.V
Subjects:	15 Linear and multilinear algebra; matrix theory 22 Topological groups, lie groups 22E Lie groups 52 Convex and discrete geometry 52B Polytopes and polyhedra 62 Statistics 62P Applications Animals Applications of Mathematics Classificació AMS DNA - genetics Evolution, Molecular Humans Lie algebras Lie, Àlgebres de Markov Chains Markov model Matemàtiques i estadística Mathematical and Computational Biology Mathematical Concepts Mathematics Mathematics and Statistics Models, Genetic Permutation groups Phylogenetics Phylogeny Purine Nucleotides - genetics Pyrimidine Nucleotides - genetics Representation theory sequences Stochastic Processes Àrees temàtiques de la UPC 15A30 62P10 Permutation groups Lie algebras 22E60 52B99 Phylogenetics Representation theory Markov model
ISSN:	0303-6812, 1432-1416, 1432-1416
Online Access:	Get full text
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