Novel RNA viruses from the native range of Hymenoscyphus fraxineus, the causal fungal agent of ash dieback

•Five mycoviruses were detected in two native populations of Hymenoscyphus fraxineus.•The overall virus prevalence in the Japanese populations was 11.2%.•All the reported viruses belong to new species in their respective genera.•A mitovirus with two genomic forms (linear and circular) was characteri...

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Veröffentlicht in:	Virus research Jg. 320; S. 198901
Hauptverfasser:	Shamsi, Wajeeha, Kondo, Hideki, Ulrich, Sven, Rigling, Daniel, Prospero, Simone
Format:	Journal Article
Sprache:	Englisch
Veröffentlicht:	Netherlands Elsevier B.V 15.10.2022
Schlagworte:	Alphaendornavirus Ascomycota Ash dieback Biological control Bunyavirales Circular RNA dieback Europe Fraxinus - microbiology Fungal Viruses fungi genomics Humans Hymenoscyphus fraxineus Invasive pathogens Mitovirus mixed infection Mycovirus new species Partitiviridae Plant Diseases - microbiology RNA RNA ligase (ATP) RNA Viruses sequence analysis viruses Europe Invasive pathogens Circular RNA Mycovirus Mitovirus Ash dieback Biological control
ISSN:	0168-1702, 1872-7492, 1872-7492
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Abstract	•Five mycoviruses were detected in two native populations of Hymenoscyphus fraxineus.•The overall virus prevalence in the Japanese populations was 11.2%.•All the reported viruses belong to new species in their respective genera.•A mitovirus with two genomic forms (linear and circular) was characterized. The native Japanese population of the fungus Hymenoscyphus fraxineus, the causal agent of ash dieback in Europe, was screened for viruses using a high-throughput sequencing method. Five RNA viruses were detected in 116 fungal isolates sequenced via Illumina RNA-seq platform, with an overall virus prevalence of 11.2%. The viruses were completely sequenced by RNA ligase mediated rapid amplification of cDNA ends (RLM-RACE) followed by Sanger sequencing. The sequences appear to represent new species from three established families (Mito-, Endorna- and Partitiviridae), one recognized genus (Botybirnavirus) and a negative-sense single-stranded RNA virus in the order Bunyavirales from the proposed family “Mybuviridae”. The highest prevalence was found for the mitovirus (7.8%), that had two genomic forms (linear and circular), while the other viruses were detected each in one isolate. Co-infection of a mitovirus and an endornavirus was also observed in one of the infected isolates. Here we describe the molecular characterization of the identified viruses. This study expands the diversity of viruses in H. fraxineus and provides the basis for investigating the virus-mediated control of ash dieback in Europe.
AbstractList	•Five mycoviruses were detected in two native populations of Hymenoscyphus fraxineus.•The overall virus prevalence in the Japanese populations was 11.2%.•All the reported viruses belong to new species in their respective genera.•A mitovirus with two genomic forms (linear and circular) was characterized. The native Japanese population of the fungus Hymenoscyphus fraxineus, the causal agent of ash dieback in Europe, was screened for viruses using a high-throughput sequencing method. Five RNA viruses were detected in 116 fungal isolates sequenced via Illumina RNA-seq platform, with an overall virus prevalence of 11.2%. The viruses were completely sequenced by RNA ligase mediated rapid amplification of cDNA ends (RLM-RACE) followed by Sanger sequencing. The sequences appear to represent new species from three established families (Mito-, Endorna- and Partitiviridae), one recognized genus (Botybirnavirus) and a negative-sense single-stranded RNA virus in the order Bunyavirales from the proposed family “Mybuviridae”. The highest prevalence was found for the mitovirus (7.8%), that had two genomic forms (linear and circular), while the other viruses were detected each in one isolate. Co-infection of a mitovirus and an endornavirus was also observed in one of the infected isolates. Here we describe the molecular characterization of the identified viruses. This study expands the diversity of viruses in H. fraxineus and provides the basis for investigating the virus-mediated control of ash dieback in Europe. The native Japanese population of the fungus Hymenoscyphus fraxineus, the causal agent of ash dieback in Europe, was screened for viruses using a high-throughput sequencing method. Five RNA viruses were detected in 116 fungal isolates sequenced via Illumina RNA-seq platform, with an overall virus prevalence of 11.2%. The viruses were completely sequenced by RNA ligase mediated rapid amplification of cDNA ends (RLM-RACE) followed by Sanger sequencing. The sequences appear to represent new species from three established families (Mito-, Endorna- and Partitiviridae), one recognized genus (Botybirnavirus) and a negative-sense single-stranded RNA virus in the order Bunyavirales from the proposed family "Mybuviridae". The highest prevalence was found for the mitovirus (7.8%), that had two genomic forms (linear and circular), while the other viruses were detected each in one isolate. Co-infection of a mitovirus and an endornavirus was also observed in one of the infected isolates. Here we describe the molecular characterization of the identified viruses. This study expands the diversity of viruses in H. fraxineus and provides the basis for investigating the virus-mediated control of ash dieback in Europe.The native Japanese population of the fungus Hymenoscyphus fraxineus, the causal agent of ash dieback in Europe, was screened for viruses using a high-throughput sequencing method. Five RNA viruses were detected in 116 fungal isolates sequenced via Illumina RNA-seq platform, with an overall virus prevalence of 11.2%. The viruses were completely sequenced by RNA ligase mediated rapid amplification of cDNA ends (RLM-RACE) followed by Sanger sequencing. The sequences appear to represent new species from three established families (Mito-, Endorna- and Partitiviridae), one recognized genus (Botybirnavirus) and a negative-sense single-stranded RNA virus in the order Bunyavirales from the proposed family "Mybuviridae". The highest prevalence was found for the mitovirus (7.8%), that had two genomic forms (linear and circular), while the other viruses were detected each in one isolate. Co-infection of a mitovirus and an endornavirus was also observed in one of the infected isolates. Here we describe the molecular characterization of the identified viruses. This study expands the diversity of viruses in H. fraxineus and provides the basis for investigating the virus-mediated control of ash dieback in Europe. The native Japanese population of the fungus Hymenoscyphus fraxineus, the causal agent of ash dieback in Europe, was screened for viruses using a high-throughput sequencing method. Five RNA viruses were detected in 116 fungal isolates sequenced via Illumina RNA-seq platform, with an overall virus prevalence of 11.2%. The viruses were completely sequenced by RNA ligase mediated rapid amplification of cDNA ends (RLM-RACE) followed by Sanger sequencing. The sequences appear to represent new species from three established families (Mito-, Endorna- and Partitiviridae), one recognized genus (Botybirnavirus) and a negative-sense single-stranded RNA virus in the order Bunyavirales from the proposed family "Mybuviridae". The highest prevalence was found for the mitovirus (7.8%), that had two genomic forms (linear and circular), while the other viruses were detected each in one isolate. Co-infection of a mitovirus and an endornavirus was also observed in one of the infected isolates. Here we describe the molecular characterization of the identified viruses. This study expands the diversity of viruses in H. fraxineus and provides the basis for investigating the virus-mediated control of ash dieback in Europe.
ArticleNumber	198901
Author	Kondo, Hideki Shamsi, Wajeeha Ulrich, Sven Rigling, Daniel Prospero, Simone
Author_xml	– sequence: 1 givenname: Wajeeha orcidid: 0000-0002-9628-5885 surname: Shamsi fullname: Shamsi, Wajeeha email: wajeeha.shamsi@wsl.ch organization: Swiss Federal Institute for Forest, Snow and Landscape Research WSL, Zuercherstrasse 111, Birmensdorf 8903, Switzerland – sequence: 2 givenname: Hideki surname: Kondo fullname: Kondo, Hideki organization: Institute of Plant Science and Resources, Okayama University, Kurashiki 710-0046, Japan – sequence: 3 givenname: Sven surname: Ulrich fullname: Ulrich, Sven organization: Swiss Federal Institute for Forest, Snow and Landscape Research WSL, Zuercherstrasse 111, Birmensdorf 8903, Switzerland – sequence: 4 givenname: Daniel surname: Rigling fullname: Rigling, Daniel organization: Swiss Federal Institute for Forest, Snow and Landscape Research WSL, Zuercherstrasse 111, Birmensdorf 8903, Switzerland – sequence: 5 givenname: Simone surname: Prospero fullname: Prospero, Simone organization: Swiss Federal Institute for Forest, Snow and Landscape Research WSL, Zuercherstrasse 111, Birmensdorf 8903, Switzerland
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Keywords	Invasive pathogens Circular RNA Mycovirus Mitovirus Ash dieback Biological control
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Snippet	•Five mycoviruses were detected in two native populations of Hymenoscyphus fraxineus.•The overall virus prevalence in the Japanese populations was 11.2%.•All... The native Japanese population of the fungus Hymenoscyphus fraxineus, the causal agent of ash dieback in Europe, was screened for viruses using a...
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SubjectTerms	Alphaendornavirus Ascomycota Ash dieback Biological control Bunyavirales Circular RNA dieback Europe Fraxinus - microbiology Fungal Viruses fungi genomics Humans Hymenoscyphus fraxineus Invasive pathogens Mitovirus mixed infection Mycovirus new species Partitiviridae Plant Diseases - microbiology RNA RNA ligase (ATP) RNA Viruses sequence analysis viruses
Title	Novel RNA viruses from the native range of Hymenoscyphus fraxineus, the causal fungal agent of ash dieback
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