The Gaussian Graphical Model in Cross-Sectional and Time-Series Data

We discuss the Gaussian graphical model (GGM; an undirected network of partial correlation coefficients) and detail its utility as an exploratory data analysis tool. The GGM shows which variables predict one-another, allows for sparse modeling of covariance structures, and may highlight potential ca...

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Bibliographic Details
Published in:Multivariate behavioral research Vol. 53; no. 4; pp. 453 - 480
Main Authors: Epskamp, Sacha, Waldorp, Lourens J., Mõttus, René, Borsboom, Denny
Format: Journal Article
Language:English
Published: United States Routledge 04.07.2018
Taylor & Francis Ltd
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ISSN:0027-3171, 1532-7906, 1532-7906
Online Access:Get full text
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Summary:We discuss the Gaussian graphical model (GGM; an undirected network of partial correlation coefficients) and detail its utility as an exploratory data analysis tool. The GGM shows which variables predict one-another, allows for sparse modeling of covariance structures, and may highlight potential causal relationships between observed variables. We describe the utility in three kinds of psychological data sets: data sets in which consecutive cases are assumed independent (e.g., cross-sectional data), temporally ordered data sets (e.g., n = 1 time series), and a mixture of the 2 (e.g., n > 1 time series). In time-series analysis, the GGM can be used to model the residual structure of a vector-autoregression analysis (VAR), also termed graphical VAR. Two network models can then be obtained: a temporal network and a contemporaneous network. When analyzing data from multiple subjects, a GGM can also be formed on the covariance structure of stationary means-the between-subjects network. We discuss the interpretation of these models and propose estimation methods to obtain these networks, which we implement in the R packages graphicalVAR and mlVAR. The methods are showcased in two empirical examples, and simulation studies on these methods are included in the supplementary materials.
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ISSN:0027-3171
1532-7906
1532-7906
DOI:10.1080/00273171.2018.1454823