jmzML, an open-source Java API for mzML, the PSI standard for MS data

We here present jmzML, a Java API for the Proteomics Standards Initiative mzML data standard. Based on the Java Architecture for XML Binding and XPath-based XML indexer random-access XML parser, jmzML can handle arbitrarily large files in minimal memory, allowing easy and efficient processing of mzM...

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Podrobná bibliografia
Vydané v:	Proteomics (Weinheim) Ročník 10; číslo 7; s. 1332 - 1335
Hlavní autori:	Côté, Richard G, Reisinger, Florian, Martens, Lennart
Médium:	Journal Article
Jazyk:	English
Vydavateľské údaje:	Weinheim Wiley-VCH Verlag 01.04.2010 WILEY-VCH Verlag WILEY‐VCH Verlag Wiley-VCH
Predmet:	Analytical, structural and metabolic biochemistry Bioinformatics Biological and medical sciences Databases, Protein Fundamental and applied biological sciences. Psychology Java API Mass Spectrometry Miscellaneous Programming Languages Proteins Proteomics - methods Proteomics Standards Initiative MS standard Software XML processing Proteomics Proteomics Standards Initiative MS standard Java API Standard Bioinformatics Standards XML processing
ISSN:	1615-9853, 1615-9861, 1615-9861
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Popis
Shrnutí:	We here present jmzML, a Java API for the Proteomics Standards Initiative mzML data standard. Based on the Java Architecture for XML Binding and XPath-based XML indexer random-access XML parser, jmzML can handle arbitrarily large files in minimal memory, allowing easy and efficient processing of mzML files using the Java programming language. jmzML also automatically resolves internal XML references on-the-fly. The library (which includes a viewer) can be downloaded from http://jmzml.googlecode.com.
Bibliografia:	http://dx.doi.org/10.1002/pmic.200900719 ArticleID:PMIC200900719 istex:D1FDF740B955789A3B8995BB609FBAAAF09BB5BA European Union - No. LSHG-CT-2006-036814 ark:/67375/WNG-4ZFLQFK8-Q These authors contributed equally to this work. ObjectType-Article-1 SourceType-Scholarly Journals-1 ObjectType-Feature-2 content type line 23 ObjectType-Article-2 ObjectType-Feature-1
ISSN:	1615-9853 1615-9861 1615-9861
DOI:	10.1002/pmic.200900719