Unraveling spatiotemporal variability of arbuscular mycorrhizal fungi in a temperate grassland plot

Summary Soils provide a heterogeneous environment varying in space and time; consequently, the biodiversity of soil microorganisms also differs spatially and temporally. For soil microbes tightly associated with plant roots, such as arbuscular mycorrhizal fungi (AMF), the diversity of plant partners...

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Vydáno v:Environmental microbiology Ročník 22; číslo 3; s. 873 - 888
Hlavní autoři: Goldmann, Kezia, Boeddinghaus, Runa S., Klemmer, Sandra, Regan, Kathleen M., Heintz‐Buschart, Anna, Fischer, Markus, Prati, Daniel, Piepho, Hans‐Peter, Berner, Doreen, Marhan, Sven, Kandeler, Ellen, Buscot, François, Wubet, Tesfaye
Médium: Journal Article
Jazyk:angličtina
Vydáno: Hoboken, USA John Wiley & Sons, Inc 01.03.2020
Wiley Subscription Services, Inc
Témata:
Arbuscular mycorrhizas
Biodiversity
Biomass
DNA
environmental factors
Fungi
Germany
Grassland
Grassland management
Grasslands
Herbivores
Heterogeneity
microbiome
Microbiomes
Microorganisms
Mycorrhizae - genetics
Mycorrhizae - physiology
mycorrhizal fungi
Plant diversity
Plant roots
Plant Roots - microbiology
Plant species
Plants - microbiology
ribosomal DNA
RNA, Ribosomal, 18S - genetics
roots
Seasonal variation
Seasonal variations
Seasons
sequence analysis
Soil
Soil - chemistry
Soil analysis
Soil Microbiology
Soil microorganisms
Soil properties
soil sampling
Soil texture
Soils
spatial variation
Species richness
Symbionts
Texture
Variation
Germany
ISSN:1462-2912, 1462-2920, 1462-2920
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Abstract Summary Soils provide a heterogeneous environment varying in space and time; consequently, the biodiversity of soil microorganisms also differs spatially and temporally. For soil microbes tightly associated with plant roots, such as arbuscular mycorrhizal fungi (AMF), the diversity of plant partners and seasonal variability in trophic exchanges between the symbionts introduce additional heterogeneity. To clarify the impact of such heterogeneity, we investigated spatiotemporal variation in AMF diversity on a plot scale (10 × 10 m) in a grassland managed at low intensity in southwest Germany. AMF diversity was determined using 18S rDNA pyrosequencing analysis of 360 soil samples taken at six time points within a year. We observed high AMF alpha‐ and beta‐diversity across the plot and at all investigated time points. Relationships were detected between spatiotemporal variation in AMF OTU richness and plant species richness, root biomass, minimal changes in soil texture and pH. The plot was characterized by high AMF turnover rates with a positive spatiotemporal relationship for AMF beta‐diversity. However, environmental variables explained only ≈20% of the variation in AMF communities. This indicates that the observed spatiotemporal richness and community variability of AMF was largely independent of the abiotic environment, but related to plant properties and the cooccurring microbiome.
AbstractList Soils provide a heterogeneous environment varying in space and time; consequently, the biodiversity of soil microorganisms also differs spatially and temporally. For soil microbes tightly associated with plant roots, such as arbuscular mycorrhizal fungi (AMF), the diversity of plant partners and seasonal variability in trophic exchanges between the symbionts introduce additional heterogeneity. To clarify the impact of such heterogeneity, we investigated spatiotemporal variation in AMF diversity on a plot scale (10 × 10 m) in a grassland managed at low intensity in southwest Germany. AMF diversity was determined using 18S rDNA pyrosequencing analysis of 360 soil samples taken at six time points within a year. We observed high AMF alpha‐ and beta‐diversity across the plot and at all investigated time points. Relationships were detected between spatiotemporal variation in AMF OTU richness and plant species richness, root biomass, minimal changes in soil texture and pH. The plot was characterized by high AMF turnover rates with a positive spatiotemporal relationship for AMF beta‐diversity. However, environmental variables explained only ≈20% of the variation in AMF communities. This indicates that the observed spatiotemporal richness and community variability of AMF was largely independent of the abiotic environment, but related to plant properties and the cooccurring microbiome.
Summary Soils provide a heterogeneous environment varying in space and time; consequently, the biodiversity of soil microorganisms also differs spatially and temporally. For soil microbes tightly associated with plant roots, such as arbuscular mycorrhizal fungi (AMF), the diversity of plant partners and seasonal variability in trophic exchanges between the symbionts introduce additional heterogeneity. To clarify the impact of such heterogeneity, we investigated spatiotemporal variation in AMF diversity on a plot scale (10 × 10 m) in a grassland managed at low intensity in southwest Germany. AMF diversity was determined using 18S rDNA pyrosequencing analysis of 360 soil samples taken at six time points within a year. We observed high AMF alpha‐ and beta‐diversity across the plot and at all investigated time points. Relationships were detected between spatiotemporal variation in AMF OTU richness and plant species richness, root biomass, minimal changes in soil texture and pH. The plot was characterized by high AMF turnover rates with a positive spatiotemporal relationship for AMF beta‐diversity. However, environmental variables explained only ≈20% of the variation in AMF communities. This indicates that the observed spatiotemporal richness and community variability of AMF was largely independent of the abiotic environment, but related to plant properties and the cooccurring microbiome.
Soils provide a heterogeneous environment varying in space and time; consequently, the biodiversity of soil microorganisms also differs spatially and temporally. For soil microbes tightly associated with plant roots, such as arbuscular mycorrhizal fungi (AMF), the diversity of plant partners and seasonal variability in trophic exchanges between the symbionts introduce additional heterogeneity. To clarify the impact of such heterogeneity, we investigated spatiotemporal variation in AMF diversity on a plot scale (10 × 10 m) in a grassland managed at low intensity in southwest Germany. AMF diversity was determined using 18S rDNA pyrosequencing analysis of 360 soil samples taken at six time points within a year. We observed high AMF alpha- and beta-diversity across the plot and at all investigated time points. Relationships were detected between spatiotemporal variation in AMF OTU richness and plant species richness, root biomass, minimal changes in soil texture and pH. The plot was characterized by high AMF turnover rates with a positive spatiotemporal relationship for AMF beta-diversity. However, environmental variables explained only ≈20% of the variation in AMF communities. This indicates that the observed spatiotemporal richness and community variability of AMF was largely independent of the abiotic environment, but related to plant properties and the cooccurring microbiome.Soils provide a heterogeneous environment varying in space and time; consequently, the biodiversity of soil microorganisms also differs spatially and temporally. For soil microbes tightly associated with plant roots, such as arbuscular mycorrhizal fungi (AMF), the diversity of plant partners and seasonal variability in trophic exchanges between the symbionts introduce additional heterogeneity. To clarify the impact of such heterogeneity, we investigated spatiotemporal variation in AMF diversity on a plot scale (10 × 10 m) in a grassland managed at low intensity in southwest Germany. AMF diversity was determined using 18S rDNA pyrosequencing analysis of 360 soil samples taken at six time points within a year. We observed high AMF alpha- and beta-diversity across the plot and at all investigated time points. Relationships were detected between spatiotemporal variation in AMF OTU richness and plant species richness, root biomass, minimal changes in soil texture and pH. The plot was characterized by high AMF turnover rates with a positive spatiotemporal relationship for AMF beta-diversity. However, environmental variables explained only ≈20% of the variation in AMF communities. This indicates that the observed spatiotemporal richness and community variability of AMF was largely independent of the abiotic environment, but related to plant properties and the cooccurring microbiome.
Author Marhan, Sven
Regan, Kathleen M.
Boeddinghaus, Runa S.
Piepho, Hans‐Peter
Fischer, Markus
Berner, Doreen
Klemmer, Sandra
Kandeler, Ellen
Wubet, Tesfaye
Heintz‐Buschart, Anna
Prati, Daniel
Goldmann, Kezia
Buscot, François
AuthorAffiliation 4 German Centre for Integrative Biodiversity Research (iDiv) Halle‐Jena‐Leipzig Deutscher Platz 5e, 04103 Leipzig Germany
1 Department of Soil Ecology UFZ – Helmholtz Centre for Environmental Research Theodor‐Lieser‐Straße 4, 06120 Halle (Saale) Germany
3 Ecosystems Center Marine Biological Laboratory, 7 MBL Street, Woods Hole, MA, 02543, USA
5 Institute of Plant Sciences and Botanical Garden University of Bern Altenbergrain 21, 3013 Bern Switzerland
2 Department of Soil Biology, Institute of Soil Science and Land Evaluation University of Hohenheim Emil‐Wolff‐Straße 27, 70599 Stuttgart Germany
6 Institute of Crop Science, Biostatistics Unit University of Hohenheim Fruwirthstraße 23, 70599 Stuttgart Germany
AuthorAffiliation_xml – name: 2 Department of Soil Biology, Institute of Soil Science and Land Evaluation University of Hohenheim Emil‐Wolff‐Straße 27, 70599 Stuttgart Germany
– name: 4 German Centre for Integrative Biodiversity Research (iDiv) Halle‐Jena‐Leipzig Deutscher Platz 5e, 04103 Leipzig Germany
– name: 3 Ecosystems Center Marine Biological Laboratory, 7 MBL Street, Woods Hole, MA, 02543, USA
– name: 5 Institute of Plant Sciences and Botanical Garden University of Bern Altenbergrain 21, 3013 Bern Switzerland
– name: 6 Institute of Crop Science, Biostatistics Unit University of Hohenheim Fruwirthstraße 23, 70599 Stuttgart Germany
– name: 1 Department of Soil Ecology UFZ – Helmholtz Centre for Environmental Research Theodor‐Lieser‐Straße 4, 06120 Halle (Saale) Germany
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  surname: Goldmann
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  organization: UFZ – Helmholtz Centre for Environmental Research
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  organization: Marine Biological Laboratory, 7 MBL Street, Woods Hole, MA, 02543, USA
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  orcidid: 0000-0002-9780-1933
  surname: Heintz‐Buschart
  fullname: Heintz‐Buschart, Anna
  organization: German Centre for Integrative Biodiversity Research (iDiv) Halle‐Jena‐Leipzig
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  surname: Fischer
  fullname: Fischer, Markus
  organization: University of Bern
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  surname: Prati
  fullname: Prati, Daniel
  organization: University of Bern
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  givenname: Hans‐Peter
  surname: Piepho
  fullname: Piepho, Hans‐Peter
  organization: University of Hohenheim
– sequence: 9
  givenname: Doreen
  surname: Berner
  fullname: Berner, Doreen
  organization: University of Hohenheim
– sequence: 10
  givenname: Sven
  surname: Marhan
  fullname: Marhan, Sven
  organization: University of Hohenheim
– sequence: 11
  givenname: Ellen
  surname: Kandeler
  fullname: Kandeler, Ellen
  organization: University of Hohenheim
– sequence: 12
  givenname: François
  orcidid: 0000-0002-2364-0006
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  organization: German Centre for Integrative Biodiversity Research (iDiv) Halle‐Jena‐Leipzig
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  givenname: Tesfaye
  orcidid: 0000-0001-8572-4486
  surname: Wubet
  fullname: Wubet, Tesfaye
  organization: German Centre for Integrative Biodiversity Research (iDiv) Halle‐Jena‐Leipzig
BackLink https://www.ncbi.nlm.nih.gov/pubmed/31087598$$D View this record in MEDLINE/PubMed
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ContentType Journal Article
Copyright 2019 The Authors. published by Society for Applied Microbiology and John Wiley & Sons Ltd.
2019 The Authors. Environmental Microbiology published by Society for Applied Microbiology and John Wiley & Sons Ltd.
2020 Society for Applied Microbiology and John Wiley & Sons Ltd
Copyright_xml – notice: 2019 The Authors. published by Society for Applied Microbiology and John Wiley & Sons Ltd.
– notice: 2019 The Authors. Environmental Microbiology published by Society for Applied Microbiology and John Wiley & Sons Ltd.
– notice: 2020 Society for Applied Microbiology and John Wiley & Sons Ltd
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DocumentTitleAlternate Unraveling spatiotemporal variability of arbuscular mycorrhizal fungi
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2019 The Authors. Environmental Microbiology published by Society for Applied Microbiology and John Wiley & Sons Ltd.
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These authors contributed equally to this work.
Present address: UFZ – Helmholtz Centre for Environmental Research, Department of Community Ecology, Theodor‐Lieser‐Straße 4, 06120 Halle (Saale), Germany.
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Snippet Summary Soils provide a heterogeneous environment varying in space and time; consequently, the biodiversity of soil microorganisms also differs spatially and...
Soils provide a heterogeneous environment varying in space and time; consequently, the biodiversity of soil microorganisms also differs spatially and...
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StartPage 873
SubjectTerms Arbuscular mycorrhizas
Biodiversity
Biomass
DNA
environmental factors
Fungi
Germany
Grassland
Grassland management
Grasslands
Herbivores
Heterogeneity
microbiome
Microbiomes
Microorganisms
Mycorrhizae - genetics
Mycorrhizae - physiology
mycorrhizal fungi
Plant diversity
Plant roots
Plant Roots - microbiology
Plant species
Plants - microbiology
ribosomal DNA
RNA, Ribosomal, 18S - genetics
roots
Seasonal variation
Seasonal variations
Seasons
sequence analysis
Soil
Soil - chemistry
Soil analysis
Soil Microbiology
Soil microorganisms
Soil properties
soil sampling
Soil texture
Soils
spatial variation
Species richness
Symbionts
Texture
Variation
Title Unraveling spatiotemporal variability of arbuscular mycorrhizal fungi in a temperate grassland plot
URI https://onlinelibrary.wiley.com/doi/abs/10.1111%2F1462-2920.14653
https://www.ncbi.nlm.nih.gov/pubmed/31087598
https://www.proquest.com/docview/2369162327
https://www.proquest.com/docview/2232003068
https://www.proquest.com/docview/2388753093
https://pubmed.ncbi.nlm.nih.gov/PMC7065148
Volume 22
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