Integrated circoviral rep-like sequences in the genome of cyprinid fish

Recently a new group of circoviruses have been detected in tissues of Barbel fish and European catfish in Hungary. In our study circovirus genomes were screened in eight additional fish species for the detection and characterization of circoviruses. Two species of these bore circoviral sequences bas...

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Veröffentlicht in:	Virus genes Jg. 47; H. 2; S. 374 - 377
Hauptverfasser:	Fehér, Enikő, Székely, Csaba, Lőrincz, Márta, Cech, Gábor, Tuboly, Tamás, Singh, Hridaya Shanker, Bányai, Krisztián, Farkas, Szilvia L
Format:	Journal Article
Sprache:	Englisch
Veröffentlicht:	Boston Springer-Verlag 01.10.2013 Springer US Springer Nature B.V
Schlagworte:	Animals Biomedical and Life Sciences Biomedicine Circovirus Circovirus - genetics Cyprinidae Cyprinidae - genetics Cyprinidae - virology fish Freshwater genes genetics Genome Labeo rohita Medical Microbiology Molecular Sequence Data mutation nucleotide sequences Phylogeny Plant Sciences Polymerase Chain Reaction Sequence Analysis, DNA Sequence Homology Silurus glanis Viral Proteins Viral Proteins - genetics Virology Hungary Bony fish Endogenous virus Circovirus India
ISSN:	0920-8569, 1572-994X, 1572-994X
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Abstract	Recently a new group of circoviruses have been detected in tissues of Barbel fish and European catfish in Hungary. In our study circovirus genomes were screened in eight additional fish species for the detection and characterization of circoviruses. Two species of these bore circoviral sequences based on conventional PCR assay targeting the replication-associated protein coding gene fragments. Interestingly, the methods successfully used before failed to amplify other parts of the circular viral genome, suggesting the presence of partial, integrated genetic elements in the genome of the host. The successfully sequenced fragments of the Indian rohu (Labeo rohita) encoded mutations which may cause frameshifts or termination in the coding region described previously in other vertebrates. Phylogenetic analyses presumed that integration of the viral genetic elements might have progressed concurrently or following the diversification of cyprinid fish. Further studies on the nature of whole circovirus genomes and integrated elements may help to understand their potential role and evolution in different fish species.
AbstractList	Recently a new group of circoviruses have been detected in tissues of Barbel fish and European catfish in Hungary. In our study circovirus genomes were screened in eight additional fish species for the detection and characterization of circoviruses. Two species of these bore circoviral sequences based on conventional PCR assay targeting the replication-associated protein coding gene fragments. Interestingly, the methods successfully used before failed to amplify other parts of the circular viral genome, suggesting the presence of partial, integrated genetic elements in the genome of the host. The successfully sequenced fragments of the Indian rohu (Labeo rohita) encoded mutations which may cause frameshifts or termination in the coding region described previously in other vertebrates. Phylogenetic analyses presumed that integration of the viral genetic elements might have progressed concurrently or following the diversification of cyprinid fish. Further studies on the nature of whole circovirus genomes and integrated elements may help to understand their potential role and evolution in different fish species. Recently a new group of circoviruses have been detected in tissues of Barbel fish and European catfish in Hungary. In our study circovirus genomes were screened in eight additional fish species for the detection and characterization of circoviruses. Two species of these bore circoviral sequences based on conventional PCR assay targeting the replication-associated protein coding gene fragments. Interestingly, the methods successfully used before failed to amplify other parts of the circular viral genome, suggesting the presence of partial, integrated genetic elements in the genome of the host. The successfully sequenced fragments of the Indian rohu (Labeo rohita) encoded mutations which may cause frameshifts or termination in the coding region described previously in other vertebrates. Phylogenetic analyses presumed that integration of the viral genetic elements might have progressed concurrently or following the diversification of cyprinid fish. Further studies on the nature of whole circovirus genomes and integrated elements may help to understand their potential role and evolution in different fish species.Recently a new group of circoviruses have been detected in tissues of Barbel fish and European catfish in Hungary. In our study circovirus genomes were screened in eight additional fish species for the detection and characterization of circoviruses. Two species of these bore circoviral sequences based on conventional PCR assay targeting the replication-associated protein coding gene fragments. Interestingly, the methods successfully used before failed to amplify other parts of the circular viral genome, suggesting the presence of partial, integrated genetic elements in the genome of the host. The successfully sequenced fragments of the Indian rohu (Labeo rohita) encoded mutations which may cause frameshifts or termination in the coding region described previously in other vertebrates. Phylogenetic analyses presumed that integration of the viral genetic elements might have progressed concurrently or following the diversification of cyprinid fish. Further studies on the nature of whole circovirus genomes and integrated elements may help to understand their potential role and evolution in different fish species. Recently a new group of circoviruses have been detected in tissues of Barbel fish and European catfish in Hungary. In our study circovirus genomes were screened in eight additional fish species for the detection and characterization of circoviruses. Two species of these bore circoviral sequences based on conventional PCR assay targeting the replication-associated protein coding gene fragments. Interestingly, the methods successfully used before failed to amplify other parts of the circular viral genome, suggesting the presence of partial, integrated genetic elements in the genome of the host. The successfully sequenced fragments of the Indian rohu (Labeo rohita) encoded mutations which may cause frameshifts or termination in the coding region described previously in other vertebrates. Phylogenetic analyses presumed that integration of the viral genetic elements might have progressed concurrently or following the diversification of cyprinid fish. Further studies on the nature of whole circovirus genomes and integrated elements may help to understand their potential role and evolution in different fish species.[PUBLICATION ABSTRACT] Recently a new group of circoviruses have been detected in tissues of Barbel fish and European catfish in Hungary. In our study circovirus genomes were screened in eight additional fish species for the detection and characterization of circoviruses. Two species of these bore circoviral sequences based on conventional PCR assay targeting the replication-associated protein coding gene fragments. Interestingly, the methods successfully used before failed to amplify other parts of the circular viral genome, suggesting the presence of partial, integrated genetic elements in the genome of the host. The successfully sequenced fragments of the Indian rohu ( Labeo rohita ) encoded mutations which may cause frameshifts or termination in the coding region described previously in other vertebrates. Phylogenetic analyses presumed that integration of the viral genetic elements might have progressed concurrently or following the diversification of cyprinid fish. Further studies on the nature of whole circovirus genomes and integrated elements may help to understand their potential role and evolution in different fish species.
Author	Cech, Gábor Bányai, Krisztián Tuboly, Tamás Székely, Csaba Singh, Hridaya Shanker Lőrincz, Márta Fehér, Enikő Farkas, Szilvia L
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BackLink	https://www.ncbi.nlm.nih.gov/pubmed/23780219$$D View this record in MEDLINE/PubMed
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CitedBy_id	crossref_primary_10_1128_jvi_01737_24 crossref_primary_10_1128_JVI_00145_18 crossref_primary_10_1016_j_virusres_2018_03_014 crossref_primary_10_1007_s00705_017_3566_z crossref_primary_10_1016_j_aquaculture_2024_741660 crossref_primary_10_3390_microorganisms9071426 crossref_primary_10_3390_v13091865 crossref_primary_10_1007_s00239_019_09913_4
Cites_doi	10.1099/vir.0.031344-0 10.1099/vir.0.050088-0 10.1007/s00705-012-1291-1 10.1016/j.vetmic.2003.10.010 10.1002/ijc.24902 10.1177/104063870001200102 10.1128/JVI.01789-10 10.1093/molbev/msr121 10.1186/1471-2148-11-276 10.1016/j.virusres.2007.11.001 10.1262/jrd.2011-026 10.1128/AEM.68.2.989-994.2002
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Fan, B. Hahn, J. Neil, S. Quackenbush, A. Rethwilm, M. Tristem, in Virus Taxonomy: Classification and Nomenclature of Viruses. Ninth Report of the International Committee on Taxonomy of Viruses, ed. By A.M.Q. King, M.J. Adams, E.B. Carstens, E.J. Lefkowitz (Elsevier, San Diego, 2011),p. 477 – reference: SpencerTEPalmariniMJ. Reprod.2012581333710.1262/jrd.2011-0261:CAS:528:DC%2BC38XlvVOntr4%3D – reference: HalamiMYNieperHMüllerHJohneRVirus Res.20081322082121808290710.1016/j.virusres.2007.11.0011:CAS:528:DC%2BD1cXitVOhtrc%3D – volume: 92 start-page: 1817 issue: Pt 8 year: 2011 ident: 928_CR12 publication-title: J. Gen. Virol. doi: 10.1099/vir.0.031344-0 – volume: 94 start-page: 1104 issue: 5 year: 2013 ident: 928_CR5 publication-title: J. Gen. Virol. doi: 10.1099/vir.0.050088-0 – volume: 142 start-page: 467 issue: 17 year: 1998 ident: 928_CR9 publication-title: Vet. Rec. – volume: 157 start-page: 1173 issue: 6 year: 2012 ident: 928_CR13 publication-title: Arch. Virol. doi: 10.1007/s00705-012-1291-1 – start-page: 343 volume-title: Retroviruses year: 1997 ident: 928_CR1 – volume: 98 start-page: 169 year: 2004 ident: 928_CR11 publication-title: Vet. Microbiol. doi: 10.1016/j.vetmic.2003.10.010 – ident: 928_CR2 – volume: 126 start-page: 306 issue: 2 year: 2010 ident: 928_CR3 publication-title: Int. J. Cancer doi: 10.1002/ijc.24902 – volume: 12 start-page: 3 issue: 1 year: 2000 ident: 928_CR10 publication-title: J. Vet. Diagn. Invest. doi: 10.1177/104063870001200102 – ident: 928_CR7 – volume: 84 start-page: 12458 issue: 23 year: 2010 ident: 928_CR8 publication-title: J. Virol. doi: 10.1128/JVI.01789-10 – volume: 28 start-page: 2731 issue: 10 year: 2011 ident: 928_CR16 publication-title: Mol. Biol. Evol. doi: 10.1093/molbev/msr121 – volume: 11 start-page: 276 year: 2011 ident: 928_CR6 publication-title: BMC Evol. 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SubjectTerms	Animals Biomedical and Life Sciences Biomedicine Circovirus Circovirus - genetics Cyprinidae Cyprinidae - genetics Cyprinidae - virology fish Freshwater genes genetics Genome Labeo rohita Medical Microbiology Molecular Sequence Data mutation nucleotide sequences Phylogeny Plant Sciences Polymerase Chain Reaction Sequence Analysis, DNA Sequence Homology Silurus glanis Viral Proteins Viral Proteins - genetics Virology
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Title	Integrated circoviral rep-like sequences in the genome of cyprinid fish
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