Molecular evidence for three genetic species of Dipteryx in the Peruvian Amazon

There is a high international demand for timber from the genus Dipteryx , or “shihuahuaco” as it is known in Peru. Developing tools that allow the identification and discrimination of Dipteryx species is therefore important for supporting management of natural populations and to underpin legal trade...

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Vydané v:Genetica Ročník 148; číslo 1; s. 1 - 11
Hlavní autori: Garcia-Davila, Carmen, Aldana Gomero, David, Renno, Jean-François, Diaz Soria, Rossana, Hidalgo Pizango, Gabriel, Flores Llampazo, Gerardo, Castro-Ruiz, Diana, Mejia de Loayza, Eduardo, Angulo Chavez, Carlos, Mader, Malte, Tysklind, Niklas, Paredes-Villanueva, Kathelyn, del Castillo Torres, Dennis, Degen, Bernd, Honorio Coronado, Eurídice N.
Médium: Journal Article
Jazyk:English
Vydavateľské údaje: Cham Springer International Publishing 01.02.2020
Springer Nature B.V
Springer Verlag
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ISSN:0016-6707, 1573-6857, 1573-6857
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Abstract There is a high international demand for timber from the genus Dipteryx , or “shihuahuaco” as it is known in Peru. Developing tools that allow the identification and discrimination of Dipteryx species is therefore important for supporting management of natural populations and to underpin legal trade of its timber. The objective of this study was the molecular characterization of Dipteryx species in the Peruvian Amazonia. Two plastid regions (cpDNA: trnH–psbA and mat K) were sequenced and 11 microsatellite markers (nDNA) were genotyped for 32 individuals identified as Dipteryx charapilla , D. micrantha morphotype 1 and D. micrantha morphotype 2. Using the concatenated sequences of the plastid genes, we identified ten haplotypes that were not shared between the species or between the D. micrantha morphotypes. Haplotypic diversity was greater in D. micrantha morphotype 2 and D. charapilla than in D. micrantha morphotype 1, which presented only one haplotype with a wide distribution in Peru. The microsatellites allowed the discrimination of the same three clades and identified diagnostic alleles for each clade. These results allowed us to demonstrate that the two morphotypes of D. micrantha are different at both the plastid and nuclear markers, which supports the existence of three genetically distinct species in Peru. This study provides information for the genetic discrimination of Dipteryx species and emphasises the importance of conserving the genetic variability of this genus in the Peruvian Amazonia.
AbstractList There is a high international demand for timber from the genus Dipteryx, or "shihuahuaco" as it is known in Peru. Developing tools that allow the identification and discrimination of Dipteryx species is therefore important for supporting management of natural populations and to underpin legal trade of its timber. The objective of this study was the molecular characterization of Dipteryx species in the Peruvian Amazonia. Two plastid regions (cpDNA: trnH-psbA and matK) were sequenced and 11 microsatellite markers (nDNA) were genotyped for 32 individuals identified as Dipteryx charapilla, D. micrantha morphotype 1 and D. micrantha morphotype 2. Using the concatenated sequences of the plastid genes, we identified ten haplotypes that were not shared between the species or between the D. micrantha morphotypes. Haplotypic diversity was greater in D. micrantha morphotype 2 and D. charapilla than in D. micrantha morphotype 1, which presented only one haplotype with a wide distribution in Peru. The microsatellites allowed the discrimination of the same three clades and identified diagnostic alleles for each clade. These results allowed us to demonstrate that the two morphotypes of D. micrantha are different at both the plastid and nuclear markers, which supports the existence of three genetically distinct species in Peru. This study provides information for the genetic discrimination of Dipteryx species and emphasises the importance of conserving the genetic variability of this genus in the Peruvian Amazonia.
There is a high international demand for timber from the genus Dipteryx, or "shihuahuaco" as it is known in Peru. Developing tools that allow the identification and discrimination of Dipteryx species is therefore important for supporting management of natural populations and to underpin legal trade of its timber. The objective of this study was the molecular characterization of Dipteryx species in the Peruvian Amazonia. Two plastid regions (cpDNA: trnH-psbA and matK) were sequenced and 11 microsatellite markers (nDNA) were genotyped for 32 individuals identified as Dipteryx charapilla, D. micrantha morphotype 1 and D. micrantha morphotype 2. Using the concatenated sequences of the plastid genes, we identified ten haplotypes that were not shared between the species or between the D. micrantha morphotypes. Haplotypic diversity was greater in D. micrantha morphotype 2 and D. charapilla than in D. micrantha morphotype 1, which presented only one haplotype with a wide distribution in Peru. The microsatellites allowed the discrimination of the same three clades and identified diagnostic alleles for each clade. These results allowed us to demonstrate that the two morphotypes of D. micrantha are different at both the plastid and nuclear markers, which supports the existence of three genetically distinct species in Peru. This study provides information for the genetic discrimination of Dipteryx species and emphasises the importance of conserving the genetic variability of this genus in the Peruvian Amazonia.There is a high international demand for timber from the genus Dipteryx, or "shihuahuaco" as it is known in Peru. Developing tools that allow the identification and discrimination of Dipteryx species is therefore important for supporting management of natural populations and to underpin legal trade of its timber. The objective of this study was the molecular characterization of Dipteryx species in the Peruvian Amazonia. Two plastid regions (cpDNA: trnH-psbA and matK) were sequenced and 11 microsatellite markers (nDNA) were genotyped for 32 individuals identified as Dipteryx charapilla, D. micrantha morphotype 1 and D. micrantha morphotype 2. Using the concatenated sequences of the plastid genes, we identified ten haplotypes that were not shared between the species or between the D. micrantha morphotypes. Haplotypic diversity was greater in D. micrantha morphotype 2 and D. charapilla than in D. micrantha morphotype 1, which presented only one haplotype with a wide distribution in Peru. The microsatellites allowed the discrimination of the same three clades and identified diagnostic alleles for each clade. These results allowed us to demonstrate that the two morphotypes of D. micrantha are different at both the plastid and nuclear markers, which supports the existence of three genetically distinct species in Peru. This study provides information for the genetic discrimination of Dipteryx species and emphasises the importance of conserving the genetic variability of this genus in the Peruvian Amazonia.
There is a high international demand for timber from the genus Dipteryx , or “shihuahuaco” as it is known in Peru. Developing tools that allow the identification and discrimination of Dipteryx species is therefore important for supporting management of natural populations and to underpin legal trade of its timber. The objective of this study was the molecular characterization of Dipteryx species in the Peruvian Amazonia. Two plastid regions (cpDNA: trnH–psbA and mat K) were sequenced and 11 microsatellite markers (nDNA) were genotyped for 32 individuals identified as Dipteryx charapilla , D. micrantha morphotype 1 and D. micrantha morphotype 2. Using the concatenated sequences of the plastid genes, we identified ten haplotypes that were not shared between the species or between the D. micrantha morphotypes. Haplotypic diversity was greater in D. micrantha morphotype 2 and D. charapilla than in D. micrantha morphotype 1, which presented only one haplotype with a wide distribution in Peru. The microsatellites allowed the discrimination of the same three clades and identified diagnostic alleles for each clade. These results allowed us to demonstrate that the two morphotypes of D. micrantha are different at both the plastid and nuclear markers, which supports the existence of three genetically distinct species in Peru. This study provides information for the genetic discrimination of Dipteryx species and emphasises the importance of conserving the genetic variability of this genus in the Peruvian Amazonia.
Author Diaz Soria, Rossana
Angulo Chavez, Carlos
Flores Llampazo, Gerardo
Mejia de Loayza, Eduardo
Garcia-Davila, Carmen
Hidalgo Pizango, Gabriel
Castro-Ruiz, Diana
Paredes-Villanueva, Kathelyn
Degen, Bernd
Renno, Jean-François
Aldana Gomero, David
del Castillo Torres, Dennis
Mader, Malte
Tysklind, Niklas
Honorio Coronado, Eurídice N.
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BackLink https://www.ncbi.nlm.nih.gov/pubmed/31858318$$D View this record in MEDLINE/PubMed
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CitedBy_id crossref_primary_10_1002_ppp3_10164
crossref_primary_10_1093_jhered_esaa011
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ContentType Journal Article
Copyright Springer Nature Switzerland AG 2019
Genetica is a copyright of Springer, (2019). All Rights Reserved.
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Issue 1
Keywords Genetic diversity
Microsatellites
Sequencing
Shihuahuaco
Dipteryx charapilla
D. micrantha
Language English
License Distributed under a Creative Commons Attribution 4.0 International License: http://creativecommons.org/licenses/by/4.0
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OpenAccessLink https://hdl.handle.net/20.500.12921/418
PMID 31858318
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PublicationSubtitle An International Journal of Genetics and Evolution
PublicationTitle Genetica
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Publisher Springer International Publishing
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Snippet There is a high international demand for timber from the genus Dipteryx , or “shihuahuaco” as it is known in Peru. Developing tools that allow the...
There is a high international demand for timber from the genus Dipteryx, or "shihuahuaco" as it is known in Peru. Developing tools that allow the...
There is a high international demand for timber from the genus Dipteryx, or “shihuahuaco” as it is known in Peru. Developing tools that allow the...
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SubjectTerms Amazonia
Animal Genetics and Genomics
Biodiversity and Ecology
Biomedical and Life Sciences
Botanics
chloroplast DNA
Diagnostic systems
Dipteryx
Environmental Sciences
Evolutionary Biology
Gene sequencing
Genetic markers
Genetic variability
genetic variation
Genetics
genotyping
Haplotypes
Human Genetics
Life Sciences
Markers
Microbial Genetics and Genomics
microsatellite repeats
Microsatellites
morphs
Natural populations
Original Paper
Peru
Plant Genetics and Genomics
Populations and Evolution
Species
trade
Vegetal Biology
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Title Molecular evidence for three genetic species of Dipteryx in the Peruvian Amazon
URI https://link.springer.com/article/10.1007/s10709-019-00082-2
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Volume 148
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