Large-scale structure-informed multiple sequence alignment of proteins with SIMSApiper

Summary SIMSApiper is a Nextflow pipeline that creates reliable, structure-informed MSAs of thousands of protein sequences faster than standard structure-based alignment methods. Structural information can be provided by the user or collected by the pipeline from online resources. Parallelization wi...

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Bibliographic Details
Published in:	Bioinformatics (Oxford, England) Vol. 40; no. 5
Main Authors:	Crauwels, Charlotte, Heidig, Sophie-Luise, Díaz, Adrián, Vranken, Wim F
Format:	Journal Article
Language:	English
Published:	England Oxford University Press 02.05.2024 Oxford Publishing Limited (England)
Subjects:	Algorithms Alignment Amino Acid Sequence Applications Note Availability Computational Biology - methods Conserved sequence Databases, Protein Information processing Internet resources Nucleotide sequence Protein structure Proteins Proteins - chemistry Secondary structure Sequence Alignment - methods Sequence Analysis, Protein - methods Sequences Software
ISSN:	1367-4811, 1367-4803, 1367-4811
Online Access:	Get full text
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