PlantLncBoost: key features for plant lncRNA identification and significant improvement in accuracy and generalization

Summary Long noncoding RNAs (lncRNAs) are critical regulators of numerous biological processes in plants. Nevertheless, their identification is challenging due to the low sequence conservation across various species. Existing computational methods for lncRNA identification often face difficulties in...

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Bibliographic Details
Published in:	The New phytologist Vol. 247; no. 3; pp. 1538 - 1549
Main Authors:	Tian, Xue‐Chan, Nie, Shuai, Domingues, Douglas, Rossi Paschoal, Alexandre, Jiang, Li‐Bo, Mao, Jian‐Feng
Format:	Journal Article
Language:	English
Published:	England Wiley Subscription Services, Inc 01.08.2025 John Wiley and Sons Inc
Subjects:	Accuracy Algorithms Biological activity Computational Biology - methods Computer applications Conserved sequence feature selection Flowers & plants Fourier transform gradient boosting algorithms Identification long noncoding RNAs (lncRNAs) Methods model selection Non-coding RNA Open Reading Frames - genetics ORF coverage Performance assessment Plant species Plants Plants - genetics RNA, Long Noncoding - genetics RNA, Messenger - genetics RNA, Plant - genetics Software Wildlife conservation model selection long noncoding RNAs (lncRNAs) Fourier transform ORF coverage gradient boosting algorithms feature selection
ISSN:	0028-646X, 1469-8137, 1469-8137
Online Access:	Get full text
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