Pyteomics—a Python Framework for Exploratory Data Analysis and Rapid Software Prototyping in Proteomics

Pyteomics is a cross-platform, open-source Python library providing a rich set of tools for MS-based proteomics. It provides modules for reading LC-MS/MS data, search engine output, protein sequence databases, theoretical prediction of retention times, electrochemical properties of polypeptides, mas...

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Vydáno v:Journal of the American Society for Mass Spectrometry Ročník 24; číslo 2; s. 301 - 304
Hlavní autoři: Goloborodko, Anton A., Levitsky, Lev I., Ivanov, Mark V., Gorshkov, Mikhail V.
Médium: Journal Article
Jazyk:angličtina
Vydáno: New York Springer-Verlag 01.02.2013
Springer Nature B.V
Témata:
Analytical Chemistry
Application Note
Bioinformatics
Biotechnology
Chemistry
Chemistry and Materials Science
Chromatography, Liquid
Data analysis
Data Mining - methods
Databases, Protein
Documentation
Electrochemical analysis
Internet
Libraries
Mass spectrometry
Organic Chemistry
Packages
Polypeptides
Proteomics
Proteomics - methods
Prototyping
Python
Reproducibility of Results
Software
Source code
Tandem Mass Spectrometry
Data processing
Bioinformatics
Proteomics
ISSN:1044-0305, 1879-1123, 1879-1123
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Popis
Shrnutí:Pyteomics is a cross-platform, open-source Python library providing a rich set of tools for MS-based proteomics. It provides modules for reading LC-MS/MS data, search engine output, protein sequence databases, theoretical prediction of retention times, electrochemical properties of polypeptides, mass and m/z calculations, and sequence parsing. Pyteomics is available under Apache license; release versions are available at the Python Package Index http://pypi.python.org/pyteomics , the source code repository at http://hg.theorchromo.ru/pyteomics , documentation at http://packages.python.org/pyteomics . Pyteomics.biolccc documentation is available at http://packages.python.org/pyteomics.biolccc/ . Questions on installation and usage can be addressed to pyteomics mailing list: pyteomics@googlegroups.com
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ISSN:1044-0305
1879-1123
1879-1123
DOI:10.1007/s13361-012-0516-6