Classification and characterization of a laboratory chicken rotavirus strain carrying G7P[35] neutralization antigens on the genotype 4 backbone gene configuration

The laboratory rotavirus strain, BRS/115, has been used for more than two decades to monitor rotaviruses in specific pathogen free flocks of laying hens. However, the virus strain has not been characterized in detail. Therefore we aimed at the description of molecular features of BRS115 by using ran...

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Published in:	Biologicals Vol. 42; no. 6; pp. 299 - 304
Main Authors:	Papp, Hajnalka, Marton, Szilvia, Farkas, Szilvia L., Jakab, Ferenc, Martella, Vito, Malik, Yashpal S., Palya, Vilmos, Bányai, Krisztián
Format:	Journal Article
Language:	English
Published:	England Elsevier Ltd 01.11.2014
Subjects:	Animals antigens Chickens - virology DNA, Complementary - metabolism flocks Gene Library genes genetic databases Genome, Viral Genotype genotyping guidelines High-Throughput Nucleotide Sequencing laying hens neutralization Phylogeny pigeons Reverse Transcriptase Polymerase Chain Reaction RNA RNA - genetics Rotavirus Rotavirus - genetics Rotavirus A Semiconductors Sequence Analysis, DNA specific pathogen-free animals transcription (genetics) viruses Genotype Rotavirus A Phylogeny
ISSN:	1045-1056, 1095-8320
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Abstract	The laboratory rotavirus strain, BRS/115, has been used for more than two decades to monitor rotaviruses in specific pathogen free flocks of laying hens. However, the virus strain has not been characterized in detail. Therefore we aimed at the description of molecular features of BRS115 by using random primed reverse transcription-PCR of the genomic RNA followed by massive parallel sequencing using the semiconductor sequencing technology. Over 64,000 trimmed reads mapped to reference sequences obtained from GenBank. The strain classified into the species Rotavirus A and genotyped G7-P[35]-I4-R4-C4-M4-A16-N4-T4-E11-H4 according to guidelines of the Rotavirus Classification Working Group. Phylogenetic analysis identified shared features with chicken, turkey and pigeon origin rotaviruses. This study demonstrates the robustness of next generation sequencing in the characterization of reference virus materials used in specialized laboratories.
AbstractList	The laboratory rotavirus strain, BRS/115, has been used for more than two decades to monitor rotaviruses in specific pathogen free flocks of laying hens. However, the virus strain has not been characterized in detail. Therefore we aimed at the description of molecular features of BRS115 by using random primed reverse transcription-PCR of the genomic RNA followed by massive parallel sequencing using the semiconductor sequencing technology. Over 64,000 trimmed reads mapped to reference sequences obtained from GenBank. The strain classified into the species Rotavirus A and genotyped G7-P[35]-I4-R4-C4-M4-A16-N4-T4-E11-H4 according to guidelines of the Rotavirus Classification Working Group. Phylogenetic analysis identified shared features with chicken, turkey and pigeon origin rotaviruses. This study demonstrates the robustness of next generation sequencing in the characterization of reference virus materials used in specialized laboratories.
Author	Farkas, Szilvia L. Bányai, Krisztián Marton, Szilvia Papp, Hajnalka Martella, Vito Palya, Vilmos Jakab, Ferenc Malik, Yashpal S.
Author_xml	– sequence: 1 givenname: Hajnalka surname: Papp fullname: Papp, Hajnalka organization: Institute for Veterinary Medical Research, Centre for Agricultural Research, Hungarian Academy of Sciences, Hungária krt. 21, H-1143 Budapest, Hungary – sequence: 2 givenname: Szilvia surname: Marton fullname: Marton, Szilvia organization: Institute for Veterinary Medical Research, Centre for Agricultural Research, Hungarian Academy of Sciences, Hungária krt. 21, H-1143 Budapest, Hungary – sequence: 3 givenname: Szilvia L. surname: Farkas fullname: Farkas, Szilvia L. organization: Institute for Veterinary Medical Research, Centre for Agricultural Research, Hungarian Academy of Sciences, Hungária krt. 21, H-1143 Budapest, Hungary – sequence: 4 givenname: Ferenc surname: Jakab fullname: Jakab, Ferenc organization: Institute of Biology, Faculty of Sciences, University of Pécs, Ifjúság útja 6., H-7624 Pécs, Hungary – sequence: 5 givenname: Vito surname: Martella fullname: Martella, Vito organization: Department of Veterinary Public Health, University of Bari, S.p. per Casamassima km 3, 70010 Valenzano, Bari, Italy – sequence: 6 givenname: Yashpal S. surname: Malik fullname: Malik, Yashpal S. organization: Division of Biological Standardisation, Indian Veterinary Research Institute (IVRI), Izatnagar, 243 122 Bareilly, Uttar Pradesh, India – sequence: 7 givenname: Vilmos surname: Palya fullname: Palya, Vilmos organization: Ceva-Phylaxia Veterinary Biologicals Co. Ltd., Szállás u. 5., H-1107 Budapest, Hungary – sequence: 8 givenname: Krisztián surname: Bányai fullname: Bányai, Krisztián email: bkrota@hotmail.com organization: Institute for Veterinary Medical Research, Centre for Agricultural Research, Hungarian Academy of Sciences, Hungária krt. 21, H-1143 Budapest, Hungary
BackLink	https://www.ncbi.nlm.nih.gov/pubmed/25284347$$D View this record in MEDLINE/PubMed
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SubjectTerms	Animals antigens Chickens - virology DNA, Complementary - metabolism flocks Gene Library genes genetic databases Genome, Viral Genotype genotyping guidelines High-Throughput Nucleotide Sequencing laying hens neutralization Phylogeny pigeons Reverse Transcriptase Polymerase Chain Reaction RNA RNA - genetics Rotavirus Rotavirus - genetics Rotavirus A Semiconductors Sequence Analysis, DNA specific pathogen-free animals transcription (genetics) viruses
Title	Classification and characterization of a laboratory chicken rotavirus strain carrying G7P[35] neutralization antigens on the genotype 4 backbone gene configuration
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