FastANI, Mash and Dashing equally differentiate between Klebsiella species
Bacteria of the genus Klebsiella are among the most important multi-drug resistant human pathogens, though they have been isolated from a variety of environments. The importance and ubiquity of these organisms call for quick and accurate methods for their classification. Average Nucleotide Identity...
Gespeichert in:
| Veröffentlicht in: | PeerJ (San Francisco, CA) Jg. 10; S. e13784 |
|---|---|
| Hauptverfasser: | , |
| Format: | Journal Article |
| Sprache: | Englisch |
| Veröffentlicht: |
United States
PeerJ, Inc
21.07.2022
PeerJ Inc |
| Schlagworte: | |
| ISSN: | 2167-8359, 2167-8359 |
| Online-Zugang: | Volltext |
| Tags: |
Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
|
| Abstract | Bacteria of the genus
Klebsiella
are among the most important multi-drug resistant human pathogens, though they have been isolated from a variety of environments. The importance and ubiquity of these organisms call for quick and accurate methods for their classification. Average Nucleotide Identity (ANI) is becoming a standard for species delimitation based on whole genome sequence comparison. However, much faster genome comparison tools have been appearing in the literature. In this study we tested the quality of different approaches for genome-based species delineation against ANI. To this end, we compared 1,189
Klebsiella
genomes using measures calculated with Mash, Dashing, and DNA compositional signatures, all of which run in a fraction of the time required to obtain ANI. Receiver Operating Characteristic (ROC) curve analyses showed equal quality in species discrimination for ANI, Mash and Dashing, with Area Under the Curve (AUC) values above 0.99, followed by DNA signatures (AUC: 0.96). Accordingly, groups obtained at optimized cutoffs largely agree with species designation, with ANI, Mash and Dashing producing 15 species-level groups. DNA signatures broke the dataset into more than 30 groups. Testing Mash to map species after adding draft genomes to the dataset also showed excellent results (AUC above 0.99), producing a total of 26
Klebsiella
species-level groups. The ecological niches of
Klebsiella
strains were found to neither be related to species delimitation, nor to protein functional content, suggesting that a single
Klebsiella
species can have a wide repertoire of ecological functions. |
|---|---|
| AbstractList | Bacteria of the genus Klebsiella are among the most important multi-drug resistant human pathogens, though they have been isolated from a variety of environments. The importance and ubiquity of these organisms call for quick and accurate methods for their classification. Average Nucleotide Identity (ANI) is becoming a standard for species delimitation based on whole genome sequence comparison. However, much faster genome comparison tools have been appearing in the literature. In this study we tested the quality of different approaches for genome-based species delineation against ANI. To this end, we compared 1,189 Klebsiella genomes using measures calculated with Mash, Dashing, and DNA compositional signatures, all of which run in a fraction of the time required to obtain ANI. Receiver Operating Characteristic (ROC) curve analyses showed equal quality in species discrimination for ANI, Mash and Dashing, with Area Under the Curve (AUC) values above 0.99, followed by DNA signatures (AUC: 0.96). Accordingly, groups obtained at optimized cutoffs largely agree with species designation, with ANI, Mash and Dashing producing 15 species-level groups. DNA signatures broke the dataset into more than 30 groups. Testing Mash to map species after adding draft genomes to the dataset also showed excellent results (AUC above 0.99), producing a total of 26 Klebsiella species-level groups. The ecological niches of Klebsiella strains were found to neither be related to species delimitation, nor to protein functional content, suggesting that a single Klebsiella species can have a wide repertoire of ecological functions. Bacteria of the genus Klebsiella are among the most important multi-drug resistant human pathogens, though they have been isolated from a variety of environments. The importance and ubiquity of these organisms call for quick and accurate methods for their classification. Average Nucleotide Identity (ANI) is becoming a standard for species delimitation based on whole genome sequence comparison. However, much faster genome comparison tools have been appearing in the literature. In this study we tested the quality of different approaches for genome-based species delineation against ANI. To this end, we compared 1,189 Klebsiella genomes using measures calculated with Mash, Dashing, and DNA compositional signatures, all of which run in a fraction of the time required to obtain ANI. Receiver Operating Characteristic (ROC) curve analyses showed equal quality in species discrimination for ANI, Mash and Dashing, with Area Under the Curve (AUC) values above 0.99, followed by DNA signatures (AUC: 0.96). Accordingly, groups obtained at optimized cutoffs largely agree with species designation, with ANI, Mash and Dashing producing 15 species-level groups. DNA signatures broke the dataset into more than 30 groups. Testing Mash to map species after adding draft genomes to the dataset also showed excellent results (AUC above 0.99), producing a total of 26 Klebsiella species-level groups. The ecological niches of Klebsiella strains were found to neither be related to species delimitation, nor to protein functional content, suggesting that a single Klebsiella species can have a wide repertoire of ecological functions. Bacteria of the genus Klebsiella are among the most important multi-drug resistant human pathogens, though they have been isolated from a variety of environments. The importance and ubiquity of these organisms call for quick and accurate methods for their classification. Average Nucleotide Identity (ANI) is becoming a standard for species delimitation based on whole genome sequence comparison. However, much faster genome comparison tools have been appearing in the literature. In this study we tested the quality of different approaches for genome-based species delineation against ANI. To this end, we compared 1,189 Klebsiella genomes using measures calculated with Mash, Dashing, and DNA compositional signatures, all of which run in a fraction of the time required to obtain ANI. Receiver Operating Characteristic (ROC) curve analyses showed equal quality in species discrimination for ANI, Mash and Dashing, with Area Under the Curve (AUC) values above 0.99, followed by DNA signatures (AUC: 0.96). Accordingly, groups obtained at optimized cutoffs largely agree with species designation, with ANI, Mash and Dashing producing 15 species-level groups. DNA signatures broke the dataset into more than 30 groups. Testing Mash to map species after adding draft genomes to the dataset also showed excellent results (AUC above 0.99), producing a total of 26 Klebsiella species-level groups. The ecological niches of Klebsiella strains were found to neither be related to species delimitation, nor to protein functional content, suggesting that a single Klebsiella species can have a wide repertoire of ecological functions.Bacteria of the genus Klebsiella are among the most important multi-drug resistant human pathogens, though they have been isolated from a variety of environments. The importance and ubiquity of these organisms call for quick and accurate methods for their classification. Average Nucleotide Identity (ANI) is becoming a standard for species delimitation based on whole genome sequence comparison. However, much faster genome comparison tools have been appearing in the literature. In this study we tested the quality of different approaches for genome-based species delineation against ANI. To this end, we compared 1,189 Klebsiella genomes using measures calculated with Mash, Dashing, and DNA compositional signatures, all of which run in a fraction of the time required to obtain ANI. Receiver Operating Characteristic (ROC) curve analyses showed equal quality in species discrimination for ANI, Mash and Dashing, with Area Under the Curve (AUC) values above 0.99, followed by DNA signatures (AUC: 0.96). Accordingly, groups obtained at optimized cutoffs largely agree with species designation, with ANI, Mash and Dashing producing 15 species-level groups. DNA signatures broke the dataset into more than 30 groups. Testing Mash to map species after adding draft genomes to the dataset also showed excellent results (AUC above 0.99), producing a total of 26 Klebsiella species-level groups. The ecological niches of Klebsiella strains were found to neither be related to species delimitation, nor to protein functional content, suggesting that a single Klebsiella species can have a wide repertoire of ecological functions. Bacteria of the genus are among the most important multi-drug resistant human pathogens, though they have been isolated from a variety of environments. The importance and ubiquity of these organisms call for quick and accurate methods for their classification. Average Nucleotide Identity (ANI) is becoming a standard for species delimitation based on whole genome sequence comparison. However, much faster genome comparison tools have been appearing in the literature. In this study we tested the quality of different approaches for genome-based species delineation against ANI. To this end, we compared 1,189 genomes using measures calculated with Mash, Dashing, and DNA compositional signatures, all of which run in a fraction of the time required to obtain ANI. Receiver Operating Characteristic (ROC) curve analyses showed equal quality in species discrimination for ANI, Mash and Dashing, with Area Under the Curve (AUC) values above 0.99, followed by DNA signatures (AUC: 0.96). Accordingly, groups obtained at optimized cutoffs largely agree with species designation, with ANI, Mash and Dashing producing 15 species-level groups. DNA signatures broke the dataset into more than 30 groups. Testing Mash to map species after adding draft genomes to the dataset also showed excellent results (AUC above 0.99), producing a total of 26 species-level groups. The ecological niches of strains were found to neither be related to species delimitation, nor to protein functional content, suggesting that a single species can have a wide repertoire of ecological functions. |
| ArticleNumber | e13784 |
| Author | Hernández-Salmerón, Julie E. Moreno-Hagelsieb, Gabriel |
| Author_xml | – sequence: 1 givenname: Julie E. orcidid: 0000-0001-6766-3093 surname: Hernández-Salmerón fullname: Hernández-Salmerón, Julie E. – sequence: 2 givenname: Gabriel surname: Moreno-Hagelsieb fullname: Moreno-Hagelsieb, Gabriel |
| BackLink | https://www.ncbi.nlm.nih.gov/pubmed/35891643$$D View this record in MEDLINE/PubMed |
| BookMark | eNptks9vFCEUx4lpY2vtybuZxIuJboUBBrg0aarVrVUveiZvmDdbNuywhRlN_3vZ3dq0jVx4eXz45v34viB7QxyQkFeMnijF1Ic1YlqeMK60eEYOa9aomebS7D2ID8hxzktajq4bqvlzcsClNqwR_JBcXkAez77P31ffIF9XMHTVxxL4YVHhzQQh3Fad73tMOIweRqxaHP8gDtXXgG32GAJUeY3OY35J9nsIGY_v7iPy6-LTz_Mvs6sfn-fnZ1czJ5QcZxKY0gYpqxWC0D1VCkBgKx10jQMloTfSMV5zTSmgaVBrAYVjrahRKn5E5jvdLsLSrpNfQbq1EbzdJmJaWEijdwGtEIZS2QqKCkSveQsKHetqxR30SF3ROt1prad2hZ0rXSYIj0Qfvwz-2i7ib2s41abhReDtnUCKNxPm0a58dpuxDBinbOvGyFoLI0xB3zxBl3FKQxnVhqpF2adhhXr9sKL7Uv6trADvdoBLMeeE_T3CqN14wm49YbeeKDR7Qjs_wujjph0f_vvnL9PSujI |
| CitedBy_id | crossref_primary_10_1186_s12864_024_10906_x crossref_primary_10_1016_j_pmpp_2025_102672 crossref_primary_10_1093_nar_gkad757 crossref_primary_10_1128_MRA_00530_23 crossref_primary_10_1186_s12864_025_11410_6 crossref_primary_10_1111_jeu_70033 crossref_primary_10_1128_mra_01192_24 crossref_primary_10_1128_msystems_00888_24 crossref_primary_10_1099_ijsem_0_006896 crossref_primary_10_1099_ijsem_0_005666 crossref_primary_10_3390_md23050209 crossref_primary_10_1186_s12864_025_11625_7 crossref_primary_10_1186_s13059_025_03482_0 crossref_primary_10_1186_s12866_025_04225_8 crossref_primary_10_3389_fmicb_2025_1626161 crossref_primary_10_1002_imt2_143 crossref_primary_10_1186_s12864_025_11822_4 crossref_primary_10_1099_ijsem_0_006467 crossref_primary_10_1038_s41522_025_00768_w crossref_primary_10_1128_aac_01737_22 crossref_primary_10_1007_s10482_025_02117_5 crossref_primary_10_1186_s13059_024_03471_9 crossref_primary_10_1111_1758_2229_70100 crossref_primary_10_1128_msystems_01366_24 crossref_primary_10_1371_journal_pone_0291492 |
| Cites_doi | 10.1093/molbev/msac135 10.1073/pnas.96.16.9184 10.3390/jof6040246 10.1099/ijsem.0.002517 10.1002/cpbi.96 10.1016/S2095-3119(16)61334-5 10.1093/nar/gkz943 10.1128/CMR.11.4.589 10.1099/jmm.0.051334-0 10.1128/genomeA.01015-15 10.1078/0723-2020-00261 10.21105/joss.00765 10.1093/bioinformatics/btt064 10.1093/nar/gkw1129 10.1016/S0140-6736(21)02724-0 10.1186/gb-2004-5-2-r12 10.1080/22221751.2019.1634981 10.1073/pnas.0906412106 10.1093/nar/gkv1344 10.1038/s42003-020-01626-5 10.1126/science.1173036 10.25083/rbl/26.3/2567.2586 10.1186/s12866-015-0396-6 10.1007/s40572-016-0089-9 10.1186/s13059-016-0997-x 10.1111/j.1462-2920.2004.00590.x 10.18637/jss.v098.i11 10.3389/fmicb.2020.01061 10.1038/nbt.3988 10.1186/s13059-019-1875-0 10.1038/s41598-019-46998-9 10.1186/s12941-017-0191-3 10.1093/molbev/msab166 10.1128/mSphereDirect.00290-17 10.1016/j.resmic.2019.02.003 10.1186/s12862-018-1261-7 10.1099/jmm.0.049437-0 10.1186/s13062-015-0085-2 10.1093/nar/gkx1068 10.1099/ijsem.0.003102 10.1038/s41467-018-07641-9 10.1099/ijs.0.64483-0 10.1016/j.cub.2019.01.033 10.1128/JCM.00826-18 10.1099/00207713-37-4-463 10.1093/bioinformatics/btv428 10.3389/fmicb.2018.01548 10.1038/s41467-021-24128-2 10.1186/s12864-020-6597-x 10.1093/nar/25.17.3389 10.2307/2285675 10.1100/tsw.2011.70 10.1371/journal.pone.0106518 10.1126/science.3287615 |
| ContentType | Journal Article |
| Copyright | 2022 Hernández-Salmerón and Moreno-Hagelsieb. 2022 Hernández-Salmerón and Moreno-Hagelsieb. This is an open access article distributed under the terms of the Creative Commons Attribution License: https://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ) and either DOI or URL of the article must be cited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. 2022 Hernández-Salmerón and Moreno-Hagelsieb 2022 Hernández-Salmerón and Moreno-Hagelsieb |
| Copyright_xml | – notice: 2022 Hernández-Salmerón and Moreno-Hagelsieb. – notice: 2022 Hernández-Salmerón and Moreno-Hagelsieb. This is an open access article distributed under the terms of the Creative Commons Attribution License: https://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ) and either DOI or URL of the article must be cited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. – notice: 2022 Hernández-Salmerón and Moreno-Hagelsieb 2022 Hernández-Salmerón and Moreno-Hagelsieb |
| DBID | AAYXX CITATION CGR CUY CVF ECM EIF NPM 3V. 7XB 88I 8FE 8FH 8FK ABUWG AFKRA AZQEC BBNVY BENPR BHPHI CCPQU DWQXO GNUQQ HCIFZ LK8 M2P M7P PHGZM PHGZT PIMPY PKEHL PQEST PQGLB PQQKQ PQUKI PRINS Q9U 7X8 5PM DOA |
| DOI | 10.7717/peerj.13784 |
| DatabaseName | CrossRef Medline MEDLINE MEDLINE (Ovid) MEDLINE MEDLINE PubMed ProQuest Central (Corporate) ProQuest Central (purchase pre-March 2016) Science Database (Alumni Edition) ProQuest SciTech Collection ProQuest Natural Science Collection ProQuest Central (Alumni) (purchase pre-March 2016) ProQuest Central (Alumni) ProQuest Central UK/Ireland ProQuest Central Essentials Biological Science Collection ProQuest Central Natural Science Collection ProQuest One Community College ProQuest Central ProQuest Central Student SciTech Premium Collection Biological Sciences Science Database Biological Science Database ProQuest Central Premium ProQuest One Academic (New) Publicly Available Content Database ProQuest One Academic Middle East (New) ProQuest One Academic Eastern Edition (DO NOT USE) ProQuest One Applied & Life Sciences ProQuest One Academic (retired) ProQuest One Academic UKI Edition ProQuest Central China ProQuest Central Basic MEDLINE - Academic PubMed Central (Full Participant titles) DOAJ Directory of Open Access Journals |
| DatabaseTitle | CrossRef MEDLINE Medline Complete MEDLINE with Full Text PubMed MEDLINE (Ovid) Publicly Available Content Database ProQuest Central Student ProQuest One Academic Middle East (New) ProQuest Central Essentials ProQuest Central (Alumni Edition) SciTech Premium Collection ProQuest One Community College ProQuest Natural Science Collection ProQuest Central China ProQuest Central ProQuest One Applied & Life Sciences Natural Science Collection ProQuest Central Korea Biological Science Collection ProQuest Central (New) ProQuest Science Journals (Alumni Edition) ProQuest Biological Science Collection ProQuest Central Basic ProQuest Science Journals ProQuest One Academic Eastern Edition Biological Science Database ProQuest SciTech Collection ProQuest One Academic UKI Edition ProQuest One Academic ProQuest One Academic (New) ProQuest Central (Alumni) MEDLINE - Academic |
| DatabaseTitleList | CrossRef MEDLINE - Academic Publicly Available Content Database MEDLINE |
| Database_xml | – sequence: 1 dbid: DOA name: DOAJ Directory of Open Access Journals url: https://www.doaj.org/ sourceTypes: Open Website – sequence: 2 dbid: NPM name: PubMed url: http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed sourceTypes: Index Database – sequence: 3 dbid: PIMPY name: Publicly Available Content Database url: http://search.proquest.com/publiccontent sourceTypes: Aggregation Database |
| DeliveryMethod | fulltext_linktorsrc |
| Discipline | Medicine |
| EISSN | 2167-8359 |
| ExternalDocumentID | oai_doaj_org_article_449005b40e7a4f83ba7ec1d273cafe0c PMC9308963 35891643 10_7717_peerj_13784 |
| Genre | Research Support, Non-U.S. Gov't Journal Article |
| GrantInformation_xml | – fundername: The Natural Sciences and Engineering Research Council of Canada |
| GroupedDBID | 53G 5VS 88I 8FE 8FH AAFWJ AAYXX ABUWG ADBBV ADRAZ AENEX AFFHD AFKRA AFPKN ALMA_UNASSIGNED_HOLDINGS AOIJS AZQEC BAWUL BBNVY BCNDV BENPR BHPHI BPHCQ CCPQU CITATION DIK DWQXO ECGQY GNUQQ GROUPED_DOAJ GX1 HCIFZ HYE IAO IEA IHR IHW ITC KQ8 LK8 M2P M48 M7P M~E OK1 PHGZM PHGZT PIMPY PQGLB PQQKQ PROAC RPM W2D YAO CGR CUY CVF ECM EIF H13 NPM 3V. 7XB 8FK PKEHL PQEST PQUKI PRINS Q9U 7X8 PUEGO 5PM |
| ID | FETCH-LOGICAL-c475t-5a1789e0127ea48f077aa4eb5cad6ca75af95c1323800ae96e884a8f01b42e573 |
| IEDL.DBID | M7P |
| ISICitedReferencesCount | 28 |
| ISICitedReferencesURI | http://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=Summon&SrcAuth=ProQuest&DestLinkType=CitingArticles&DestApp=WOS_CPL&KeyUT=000964479800006&url=https%3A%2F%2Fcvtisr.summon.serialssolutions.com%2F%23%21%2Fsearch%3Fho%3Df%26include.ft.matches%3Dt%26l%3Dnull%26q%3D |
| ISSN | 2167-8359 |
| IngestDate | Mon Nov 10 04:33:12 EST 2025 Tue Nov 04 01:53:50 EST 2025 Thu Sep 04 19:29:34 EDT 2025 Fri Jul 25 11:38:39 EDT 2025 Mon Jul 21 05:48:22 EDT 2025 Sat Nov 29 03:53:54 EST 2025 Tue Nov 18 22:22:54 EST 2025 |
| IsDoiOpenAccess | true |
| IsOpenAccess | true |
| IsPeerReviewed | true |
| IsScholarly | true |
| Keywords | Klebsiella Sketching algorithms FastANI Hierarchical clustering Genome comparison |
| Language | English |
| License | https://creativecommons.org/licenses/by/4.0 2022 Hernández-Salmerón and Moreno-Hagelsieb. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ) and either DOI or URL of the article must be cited. |
| LinkModel | DirectLink |
| MergedId | FETCHMERGED-LOGICAL-c475t-5a1789e0127ea48f077aa4eb5cad6ca75af95c1323800ae96e884a8f01b42e573 |
| Notes | ObjectType-Article-1 SourceType-Scholarly Journals-1 ObjectType-Feature-2 content type line 14 content type line 23 |
| ORCID | 0000-0001-6766-3093 |
| OpenAccessLink | https://www.proquest.com/docview/2692477191?pq-origsite=%requestingapplication% |
| PMID | 35891643 |
| PQID | 2692477191 |
| PQPubID | 2045935 |
| ParticipantIDs | doaj_primary_oai_doaj_org_article_449005b40e7a4f83ba7ec1d273cafe0c pubmedcentral_primary_oai_pubmedcentral_nih_gov_9308963 proquest_miscellaneous_2695284949 proquest_journals_2692477191 pubmed_primary_35891643 crossref_primary_10_7717_peerj_13784 crossref_citationtrail_10_7717_peerj_13784 |
| PublicationCentury | 2000 |
| PublicationDate | 2022-07-21 |
| PublicationDateYYYYMMDD | 2022-07-21 |
| PublicationDate_xml | – month: 07 year: 2022 text: 2022-07-21 day: 21 |
| PublicationDecade | 2020 |
| PublicationPlace | United States |
| PublicationPlace_xml | – name: United States – name: San Diego – name: San Diego, USA |
| PublicationTitle | PeerJ (San Francisco, CA) |
| PublicationTitleAlternate | PeerJ |
| PublicationYear | 2022 |
| Publisher | PeerJ, Inc PeerJ Inc |
| Publisher_xml | – name: PeerJ, Inc – name: PeerJ Inc |
| References | Dantur (10.7717/peerj.13784/ref-11) 2018; 9 Altschul (10.7717/peerj.13784/ref-2) 1997; 25 Dong (10.7717/peerj.13784/ref-14) 2020; 11 Barrios-Camacho (10.7717/peerj.13784/ref-5) 2019; 9 Caputo (10.7717/peerj.13784/ref-9) 2015; 10 Goris (10.7717/peerj.13784/ref-20) 2007; 57 Steinegger (10.7717/peerj.13784/ref-46) 2017; 35 Martínez-Romero (10.7717/peerj.13784/ref-31) 2015; 3 Finn (10.7717/peerj.13784/ref-16) 2015; 44 Davis (10.7717/peerj.13784/ref-12) 2016; 3 Davis (10.7717/peerj.13784/ref-13) 2020; 48 Wayne (10.7717/peerj.13784/ref-51) 1987; 37 Hernández-González (10.7717/peerj.13784/ref-24) 2018; 18 Podder (10.7717/peerj.13784/ref-38) 2014; 9 Tomulescu (10.7717/peerj.13784/ref-50) 2021; 26 Long (10.7717/peerj.13784/ref-29) 2017; 2 Hennart (10.7717/peerj.13784/ref-23) 2022; 39 Baker (10.7717/peerj.13784/ref-4) 2019; 20 Murray (10.7717/peerj.13784/ref-33) 2021; 12 Podschun (10.7717/peerj.13784/ref-39) 1998; 11 Struve (10.7717/peerj.13784/ref-47) 2004; 6 Seki (10.7717/peerj.13784/ref-45) 2013; 62 Ondov (10.7717/peerj.13784/ref-35) 2016; 17 Rosenblueth (10.7717/peerj.13784/ref-44) 2004; 27 Marchler-Bauer (10.7717/peerj.13784/ref-30) 2017; 45 Yu (10.7717/peerj.13784/ref-54) 2020; 69 Xu (10.7717/peerj.13784/ref-53) 2017; 16 Rodrigues (10.7717/peerj.13784/ref-42) 2019; 170 Baker (10.7717/peerj.13784/ref-3) 1974; 69 Kurtz (10.7717/peerj.13784/ref-28) 2004; 5 Pinto-tomás (10.7717/peerj.13784/ref-37) 2009; 326 Bohlin (10.7717/peerj.13784/ref-7) 2011; 11 Cohan (10.7717/peerj.13784/ref-10) 2019; 29 Drost (10.7717/peerj.13784/ref-15) 2018; 3 Passet (10.7717/peerj.13784/ref-36) 2018; 68 Xu (10.7717/peerj.13784/ref-52) 2021; 38 Richter (10.7717/peerj.13784/ref-41) 2009; 106 Rodríguez-Medina (10.7717/peerj.13784/ref-43) 2019; 8 Garza-Ramos (10.7717/peerj.13784/ref-19) 2015; 15 Moreno-Hagelsieb (10.7717/peerj.13784/ref-32) 2013; 29 Huang (10.7717/peerj.13784/ref-26) 2016; 15 R Core Team (10.7717/peerj.13784/ref-40) 2021 Haft (10.7717/peerj.13784/ref-22) 2018; 46 Hu (10.7717/peerj.13784/ref-25) 2019; 69 Berrazeg (10.7717/peerj.13784/ref-6) 2013; 62 Thiele (10.7717/peerj.13784/ref-49) 2021; 98 Abram (10.7717/peerj.13784/ref-1) 2021; 4 Swets (10.7717/peerj.13784/ref-48) 1988; 240 Gostinčar (10.7717/peerj.13784/ref-21) 2020; 6 Murray (10.7717/peerj.13784/ref-34) 2022; 399 Zhou (10.7717/peerj.13784/ref-55) 2020; 21 Campbell (10.7717/peerj.13784/ref-8) 1999; 96 Fontana (10.7717/peerj.13784/ref-17) 2019; 57 Galili (10.7717/peerj.13784/ref-18) 2015; 31 Jain (10.7717/peerj.13784/ref-27) 2018; 9 |
| References_xml | – volume: 39 start-page: msac135 issue: 7 year: 2022 ident: 10.7717/peerj.13784/ref-23 article-title: A dual barcoding approach to bacterial strain nomenclature: genomic taxonomy of Klebsiella pneumoniae strains publication-title: Molecular Biology and Evolution doi: 10.1093/molbev/msac135 – volume: 96 start-page: 9184 issue: 16 year: 1999 ident: 10.7717/peerj.13784/ref-8 article-title: Genome signature comparisons among prokaryote, plasmid, and mitochondrial DNA publication-title: Proceedings of the National Academy of Sciences of the United States of America doi: 10.1073/pnas.96.16.9184 – volume: 6 start-page: 1 issue: 4 year: 2020 ident: 10.7717/peerj.13784/ref-21 article-title: Towards genomic criteria for delineating fungal species publication-title: Journal of Fungi doi: 10.3390/jof6040246 – volume: 68 start-page: 377 issue: 1 year: 2018 ident: 10.7717/peerj.13784/ref-36 article-title: Description of Klebsiella grimontii sp. nov publication-title: International Journal of Systematic and Evolutionary Microbiology doi: 10.1099/ijsem.0.002517 – volume: 69 start-page: e96 issue: 1 year: 2020 ident: 10.7717/peerj.13784/ref-54 article-title: Using ggtree to visualize data on tree-like structures publication-title: Current Protocols in Bioinformatics doi: 10.1002/cpbi.96 – volume: 15 start-page: 1510 issue: 7 year: 2016 ident: 10.7717/peerj.13784/ref-26 article-title: Pathogenicity of Klebsiella pneumonia (KpC4) infecting maize and mice publication-title: Journal of Integrative Agriculture doi: 10.1016/S2095-3119(16)61334-5 – volume: 48 start-page: D606 issue: D1 year: 2020 ident: 10.7717/peerj.13784/ref-13 article-title: The PATRIC Bioinformatics Resource Center: expanding data and analysis capabilities publication-title: Nucleic Acids Research doi: 10.1093/nar/gkz943 – volume: 11 start-page: 589 issue: 4 year: 1998 ident: 10.7717/peerj.13784/ref-39 article-title: Klebsiella spp. as nosocomial pathogens: epidemiology, taxonomy, typing methods, and pathogenicity factors publication-title: Clinical Microbiology Reviews doi: 10.1128/CMR.11.4.589 – volume: 62 start-page: 801 issue: PART5 year: 2013 ident: 10.7717/peerj.13784/ref-45 article-title: Fatal sepsis caused by an unusual Klebsiella species that was misidentified by an automated identification system publication-title: Journal of Medical Microbiology doi: 10.1099/jmm.0.051334-0 – volume: 3 start-page: e01015 issue: 5 year: 2015 ident: 10.7717/peerj.13784/ref-31 article-title: Draft genome sequences of Klebsiella variicola plant isolates publication-title: Genome Announcements doi: 10.1128/genomeA.01015-15 – volume: 27 start-page: 27 issue: 1 year: 2004 ident: 10.7717/peerj.13784/ref-44 article-title: Klebsiella variicola, a novel species with clinical and plant-associated isolates publication-title: Systematic and Applied Microbiology doi: 10.1078/0723-2020-00261 – volume: 3 start-page: 765 issue: 26 year: 2018 ident: 10.7717/peerj.13784/ref-15 article-title: Philentropy: information theory and distance quantification with R publication-title: Journal of Open Source Software doi: 10.21105/joss.00765 – volume: 29 start-page: 947 issue: 7 year: 2013 ident: 10.7717/peerj.13784/ref-32 article-title: Phylogenomic clustering for selecting non-redundant genomes for comparative genomics publication-title: Bioinformatics doi: 10.1093/bioinformatics/btt064 – volume: 45 start-page: D200 issue: D1 year: 2017 ident: 10.7717/peerj.13784/ref-30 article-title: CDD/SPARCLE: functional classification of proteins via subfamily domain architectures publication-title: Nucleic Acids Research doi: 10.1093/nar/gkw1129 – volume: 399 start-page: 629 year: 2022 ident: 10.7717/peerj.13784/ref-34 article-title: Global burden of bacterial antimicrobial resistance in 2019: a systematic analysis publication-title: The Lancet doi: 10.1016/S0140-6736(21)02724-0 – volume: 5 start-page: R12 issue: 2 year: 2004 ident: 10.7717/peerj.13784/ref-28 article-title: Versatile and open software for comparing large genomes publication-title: Genome Biology doi: 10.1186/gb-2004-5-2-r12 – volume: 8 start-page: 973 issue: 1 year: 2019 ident: 10.7717/peerj.13784/ref-43 article-title: Klebsiella variicola: an emerging pathogen in humans publication-title: Emerging Microbes and Infections doi: 10.1080/22221751.2019.1634981 – volume: 106 start-page: 19126 issue: 45 year: 2009 ident: 10.7717/peerj.13784/ref-41 article-title: Shifting the genomic gold standard for the prokaryotic species definition publication-title: Proceedings of the National Academy of Sciences of the United States of America doi: 10.1073/pnas.0906412106 – volume: 44 start-page: D279 issue: D1 year: 2015 ident: 10.7717/peerj.13784/ref-16 article-title: The Pfam protein families database: towards a more sustainable future publication-title: Nucleic Acids Research doi: 10.1093/nar/gkv1344 – volume: 4 start-page: 570 issue: 1 year: 2021 ident: 10.7717/peerj.13784/ref-1 article-title: Mash-based analyses of Escherichia coli genomes reveal 14 distinct phylogroups publication-title: Communications Biology doi: 10.1038/s42003-020-01626-5 – volume: 326 start-page: 1120 issue: 5956 year: 2009 ident: 10.7717/peerj.13784/ref-37 article-title: Symbiotic nitrogen fixation in the fungus gardens of leaf-cutter ants publication-title: Science doi: 10.1126/science.1173036 – volume: 26 start-page: 2567 issue: 3 year: 2021 ident: 10.7717/peerj.13784/ref-50 article-title: A review: Klebsiella pneumoniae, Klebisella oxytoca and biotechnology publication-title: Romanian Biotechnological Letters doi: 10.25083/rbl/26.3/2567.2586 – volume: 15 start-page: 1 issue: 1 year: 2015 ident: 10.7717/peerj.13784/ref-19 article-title: Development of a Multiplex-PCR probe system for the proper identification of Klebsiella variicola Microbial genetics, genomics and proteomics publication-title: BMC Microbiology doi: 10.1186/s12866-015-0396-6 – volume: 3 start-page: 128 issue: 2 year: 2016 ident: 10.7717/peerj.13784/ref-12 article-title: Recent research examining links among klebsiella pneumoniae from food, food animals, and human extraintestinal infections publication-title: Current Environmental Health Reports doi: 10.1007/s40572-016-0089-9 – volume: 17 start-page: 1 issue: 1 year: 2016 ident: 10.7717/peerj.13784/ref-35 article-title: Mash: fast genome and metagenome distance estimation using MinHash publication-title: Genome Biology doi: 10.1186/s13059-016-0997-x – volume: 6 start-page: 584 issue: 6 year: 2004 ident: 10.7717/peerj.13784/ref-47 article-title: Pathogenic potential of environmental Klebsiella pneumoniae isolates publication-title: Environmental Microbiology doi: 10.1111/j.1462-2920.2004.00590.x – volume: 98 start-page: 1 issue: 11 year: 2021 ident: 10.7717/peerj.13784/ref-49 article-title: cutpointr: improved estimation and validation of optimal cutpoints in R publication-title: Journal of Statistical Software doi: 10.18637/jss.v098.i11 – volume: 11 start-page: 1 issue: June year: 2020 ident: 10.7717/peerj.13784/ref-14 article-title: A new alignment-free whole metagenome comparison tool and its application on gut microbiomes of wild giant pandas publication-title: Frontiers in Microbiology doi: 10.3389/fmicb.2020.01061 – volume: 35 start-page: 2 issue: 11 year: 2017 ident: 10.7717/peerj.13784/ref-46 article-title: MMseqs2 enables sensitive protein sequence searching for the analysis of massive data sets publication-title: Nature Biotechnology doi: 10.1038/nbt.3988 – volume: 20 start-page: 1 issue: 265 year: 2019 ident: 10.7717/peerj.13784/ref-4 article-title: Dashing: fast and accurate genomic distances with HyperLogLog publication-title: Genome Biology doi: 10.1186/s13059-019-1875-0 – volume: 9 start-page: 1 issue: 1 year: 2019 ident: 10.7717/peerj.13784/ref-5 article-title: Molecular epidemiology of Klebsiella variicola obtained from different sources publication-title: Scientific Reports doi: 10.1038/s41598-019-46998-9 – volume: 16 start-page: 1 issue: 18 year: 2017 ident: 10.7717/peerj.13784/ref-53 article-title: Systematic review and meta-analysis of mortality of patients infected with carbapenem-resistant Klebsiella pneumoniae publication-title: Annals of Clinical Microbiology and Antimicrobials doi: 10.1186/s12941-017-0191-3 – year: 2021 ident: 10.7717/peerj.13784/ref-40 article-title: R: a language and environment for statistical computing – volume: 38 start-page: 4039 issue: 9 year: 2021 ident: 10.7717/peerj.13784/ref-52 article-title: ggtreeExtra: compact visualization of richly annotated phylogenetic data publication-title: Molecular Biology and Evolution doi: 10.1093/molbev/msab166 – volume: 2 start-page: 1 issue: 4 year: 2017 ident: 10.7717/peerj.13784/ref-29 article-title: Whole-genome sequencing of human clinical klebsiella pneumoniae isolates reveals misidentification and misunderstandings of Klebsiella pneumoniae, Klebsiella variicola, and Klebsiella quasipneumoniae publication-title: Clinical Science and Epidemiology doi: 10.1128/mSphereDirect.00290-17 – volume: 170 start-page: 165 issue: 3 year: 2019 ident: 10.7717/peerj.13784/ref-42 article-title: Description of Klebsiella africanensis sp. nov., Klebsiella variicola subsp. tropicalensis subsp. nov. and Klebsiella variicola subsp. variicola subsp. nov publication-title: Research in Microbiology doi: 10.1016/j.resmic.2019.02.003 – volume: 18 start-page: 148 issue: 1 year: 2018 ident: 10.7717/peerj.13784/ref-24 article-title: Environmentally-driven gene content convergence and the Bacillus phylogeny publication-title: BMC Evolutionary Biology doi: 10.1186/s12862-018-1261-7 – volume: 62 start-page: 864 issue: 6 year: 2013 ident: 10.7717/peerj.13784/ref-6 article-title: Hierarchical clustering as a rapid tool for surveillance of emerging antibiotic-resistance phenotypes in Klebsiella pneumoniae strains publication-title: Journal of Medical Microbiology doi: 10.1099/jmm.0.049437-0 – volume: 10 start-page: 1 issue: 1 year: 2015 ident: 10.7717/peerj.13784/ref-9 article-title: Pan-genomic analysis to redefine species and subspecies based on quantum discontinuous variation: the Klebsiella paradigm publication-title: Biology Direct doi: 10.1186/s13062-015-0085-2 – volume: 46 start-page: D851 issue: D1 year: 2018 ident: 10.7717/peerj.13784/ref-22 article-title: RefSeq: an update on prokaryotic genome annotation and curation publication-title: Nucleic Acids Research doi: 10.1093/nar/gkx1068 – volume: 69 start-page: 333 issue: 2 year: 2019 ident: 10.7717/peerj.13784/ref-25 article-title: Klebsiella huaxiensis sp. nov., recovered from human urine publication-title: International Journal of Systematic and Evolutionary Microbiology doi: 10.1099/ijsem.0.003102 – volume: 9 start-page: 1 issue: 5114 year: 2018 ident: 10.7717/peerj.13784/ref-27 article-title: High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundaries publication-title: Nature Communications doi: 10.1038/s41467-018-07641-9 – volume: 57 start-page: 81 issue: 1 year: 2007 ident: 10.7717/peerj.13784/ref-20 article-title: DNA—DNA hybridization values and their relationship to whole-genome sequence similarities publication-title: International Journal of Systematic and Evolutionary Microbiology doi: 10.1099/ijs.0.64483-0 – volume: 29 start-page: R169 issue: 5 year: 2019 ident: 10.7717/peerj.13784/ref-10 article-title: Systematics: the cohesive nature of bacterial species taxa publication-title: Current Biology doi: 10.1016/j.cub.2019.01.033 – volume: 57 start-page: 1 issue: 1 year: 2019 ident: 10.7717/peerj.13784/ref-17 article-title: The Brief Case: Klebsiella variicola—identifying the misidentified publication-title: Journal of Clinical Microbiology doi: 10.1128/JCM.00826-18 – volume: 37 start-page: 463 issue: 4 year: 1987 ident: 10.7717/peerj.13784/ref-51 article-title: Report of the ad hoc committee on reconciliation of approaches to bacterial systematics publication-title: International Journal of Systematic and Evolutionary Microbiology doi: 10.1099/00207713-37-4-463 – volume: 31 start-page: 3718 issue: 22 year: 2015 ident: 10.7717/peerj.13784/ref-18 article-title: dendextend: an R package for visualizing, adjusting and comparing trees of hierarchical clustering publication-title: Bioinformatics doi: 10.1093/bioinformatics/btv428 – volume: 9 start-page: 1 issue: 1548 year: 2018 ident: 10.7717/peerj.13784/ref-11 article-title: The endophytic strain Klebsiella michiganensis Kd70 lacks pathogenic island-like regions in its genome and is incapable of infecting the urinary tract in mice publication-title: Frontiers in Microbiology doi: 10.3389/fmicb.2018.01548 – volume: 12 start-page: 4059 issue: 1 year: 2021 ident: 10.7717/peerj.13784/ref-33 article-title: Re-evaluating the evidence for a universal genetic boundary among microbial species publication-title: Nature Communications doi: 10.1038/s41467-021-24128-2 – volume: 21 start-page: 1 issue: 1 year: 2020 ident: 10.7717/peerj.13784/ref-55 article-title: A completeness-independent method for pre-selection of closely related genomes for species delineation in prokaryotes publication-title: BMC Genomics doi: 10.1186/s12864-020-6597-x – volume: 25 start-page: 3389 issue: 17 year: 1997 ident: 10.7717/peerj.13784/ref-2 article-title: Gapped BLAST and PSI-BLAST: a new generation of protein database search programs publication-title: Nucleic Acids Research doi: 10.1093/nar/25.17.3389 – volume: 69 start-page: 440 issue: 346 year: 1974 ident: 10.7717/peerj.13784/ref-3 article-title: Stability of two hierarchical grouping techniques case I: sensitivity to data errors publication-title: Journal of the American Statistical Association doi: 10.2307/2285675 – volume: 11 start-page: 715 year: 2011 ident: 10.7717/peerj.13784/ref-7 article-title: Genomic signatures in microbes—properties and applications publication-title: The Scientific World Journal doi: 10.1100/tsw.2011.70 – volume: 9 start-page: 1 issue: 9 year: 2014 ident: 10.7717/peerj.13784/ref-38 article-title: Klebsiella species associated with bovine mastitis in Newfoundland publication-title: PLOS ONE doi: 10.1371/journal.pone.0106518 – volume: 240 start-page: 1285 issue: 4857 year: 1988 ident: 10.7717/peerj.13784/ref-48 article-title: Measuring the accuracy of diagnostic systems publication-title: Science doi: 10.1126/science.3287615 |
| SSID | ssj0000826083 |
| Score | 2.4087093 |
| Snippet | Bacteria of the genus
Klebsiella
are among the most important multi-drug resistant human pathogens, though they have been isolated from a variety of... Bacteria of the genus are among the most important multi-drug resistant human pathogens, though they have been isolated from a variety of environments. The... Bacteria of the genus Klebsiella are among the most important multi-drug resistant human pathogens, though they have been isolated from a variety of... |
| SourceID | doaj pubmedcentral proquest pubmed crossref |
| SourceType | Open Website Open Access Repository Aggregation Database Index Database Enrichment Source |
| StartPage | e13784 |
| SubjectTerms | Antibiotics Bacteria Bioinformatics Computational Biology Datasets Deoxyribonucleic acid DNA Drug resistance FastANI Genome comparison Genome, Bacterial - genetics Genomes Genomics Hierarchical clustering Humans Klebsiella Klebsiella - genetics Microbiology Multidrug resistance Nucleotide sequence Sketching algorithms Species |
| SummonAdditionalLinks | – databaseName: DOAJ Directory of Open Access Journals dbid: DOA link: http://cvtisr.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwrV3dS9xAEB-KiPgiWr-itmzBp9JgPnazu49qe2hbDx9a8C1MNhM8OKLcnYL_vbOb3HFXBF_6mh2SzczO7u_HzgfAqWpqmREjN9LIBKUi9jnXZHHOrsTolurUhUTh33o4NHd39nap1ZePCevKA3eKO5PS8kKpZMIvk43JK9Tk0ppPXYcNJc7vvox6lshU2IMZNTO46BLyNFOWs0eiiQ_q0kauHEGhUv9b8PLfKMmlY2ewDVs9XhTn3Tx34AO1H2Hjpr8R34WfA2TiOLz-Jm5wei-wrcX3rj-SIJ8wOX4R8x4o7MszEn1glvg1pmo68rFPwmdbMmHeg7-DH38ur-K-P0LspFazWGGqjSV_eUwoTZNojSipUg7rwqFW2FjlmG7mjAqRbEHGSGS5tGL7KJ3vw1r70NIhCNkUdUFU6VTVMsUEVYG5wqQxleLPUARf5yorXV883PewGJdMIrx-y6DfMug3gtOF8GNXM-NtsQuv-4WIL3QdHrD5y9785Xvmj-Bkbrmy975pmRXMKvlzNo3gy2KY_cZfhmBLD09BRvHRbKWN4KAz9GImuW-1yFAtAr2yBFamujrSju5DbW6bJ4b3tKP_8W_HsJn5ZItEx1l6AmuzyRN9gnX3PBtNJ5_Dgn8FF1gJow priority: 102 providerName: Directory of Open Access Journals |
| Title | FastANI, Mash and Dashing equally differentiate between Klebsiella species |
| URI | https://www.ncbi.nlm.nih.gov/pubmed/35891643 https://www.proquest.com/docview/2692477191 https://www.proquest.com/docview/2695284949 https://pubmed.ncbi.nlm.nih.gov/PMC9308963 https://doaj.org/article/449005b40e7a4f83ba7ec1d273cafe0c |
| Volume | 10 |
| WOSCitedRecordID | wos000964479800006&url=https%3A%2F%2Fcvtisr.summon.serialssolutions.com%2F%23%21%2Fsearch%3Fho%3Df%26include.ft.matches%3Dt%26l%3Dnull%26q%3D |
| hasFullText | 1 |
| inHoldings | 1 |
| isFullTextHit | |
| isPrint | |
| journalDatabaseRights | – providerCode: PRVAON databaseName: DOAJ Directory of Open Access Journals customDbUrl: eissn: 2167-8359 dateEnd: 99991231 omitProxy: false ssIdentifier: ssj0000826083 issn: 2167-8359 databaseCode: DOA dateStart: 20130101 isFulltext: true titleUrlDefault: https://www.doaj.org/ providerName: Directory of Open Access Journals – providerCode: PRVHPJ databaseName: ROAD: Directory of Open Access Scholarly Resources customDbUrl: eissn: 2167-8359 dateEnd: 99991231 omitProxy: false ssIdentifier: ssj0000826083 issn: 2167-8359 databaseCode: M~E dateStart: 20130101 isFulltext: true titleUrlDefault: https://road.issn.org providerName: ISSN International Centre – providerCode: PRVPQU databaseName: Biological Science Database customDbUrl: eissn: 2167-8359 dateEnd: 99991231 omitProxy: false ssIdentifier: ssj0000826083 issn: 2167-8359 databaseCode: M7P dateStart: 20130212 isFulltext: true titleUrlDefault: http://search.proquest.com/biologicalscijournals providerName: ProQuest – providerCode: PRVPQU databaseName: ProQuest Central customDbUrl: eissn: 2167-8359 dateEnd: 99991231 omitProxy: false ssIdentifier: ssj0000826083 issn: 2167-8359 databaseCode: BENPR dateStart: 20130212 isFulltext: true titleUrlDefault: https://www.proquest.com/central providerName: ProQuest – providerCode: PRVPQU databaseName: Publicly Available Content Database customDbUrl: eissn: 2167-8359 dateEnd: 99991231 omitProxy: false ssIdentifier: ssj0000826083 issn: 2167-8359 databaseCode: PIMPY dateStart: 20130212 isFulltext: true titleUrlDefault: http://search.proquest.com/publiccontent providerName: ProQuest – providerCode: PRVPQU databaseName: Science Database customDbUrl: eissn: 2167-8359 dateEnd: 99991231 omitProxy: false ssIdentifier: ssj0000826083 issn: 2167-8359 databaseCode: M2P dateStart: 20130212 isFulltext: true titleUrlDefault: https://search.proquest.com/sciencejournals providerName: ProQuest |
| link | http://cvtisr.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwpR1Nb9Mw9IltCHHhGxYYlZF2QkTLhx07J8RgFQNaRQikcooc54VVqtKu6ZD49zw7bqBo4sIlh_pVsfK-vwGORVPzBMlyQ6nJQamQeM40SZgSK5F1i3VsXKPwJzmdqtksL3zArfNllVuZ6AR1vTQ2Rn6SZOQpSEnuxevVZWi3Rtnsql-hsQcHdkpC6kr3iiHGQuotIxOjb8uj_8qTFeLalnZJxXcUkZvXf52R-Xet5B_KZ3z3f699D-54s5O96enkPtzA9gHcmvjE-kP4MNbkf07PX7GJ7i6Ybmv2rl-zxND2XS5-su0qFRIJG2S-vot9XGDVzW0JFbNNm-R3P4Kv47Mvb9-Hfs1CaLgUm1DoWKocbQ4aNVdNJKXWHCthdJ0ZLYVucmHIa03JuNSYZ6gU1wQXV4RmIdPHsN8uWzwExpuszhArGYuaxzrSItOp0FGjKkGvwQBebr95afwMcrsKY1GSL2IRVDoElQ5BARwPwKt-9Mb1YKcWeQOInZftfliuv5ee_UrOcxI3FY-IJHmj0kpLNHFNtpvRDUYmgKMt-krPxF35G3cBvBiOif1sTkW3uLxyMII0fM7zAJ70lDLcJLUbG8niC0Du0NDOVXdP2vmFG_Gdp5Ei0fj039d6BrcT240RyTCJj2B_s77C53DT_NjMu_UI9uRMjeDg9GxafB65YAM9J0kxclxCJ8X5pPj2CxoIHS0 |
| linkProvider | ProQuest |
| linkToHtml | http://cvtisr.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMw1V1Lb9QwEB6VLaJceD8CBYxULoioedixc0AIKKsu-9AeitSeguNM2pVW2WWzBfVP8RsZ5wWLKm49cI1HiR1_M_7GnvEA7Ik84wESc0OpyUFJkXTO5IEbkioRu8XMN1Wi8EhOJur4OJ5uwc82F8aGVbY2sTLU2cLYPfL9ICJPQUpyL94tv7m2apQ9XW1LaNSwGOLFD3LZyreDA5rfV0HQ_3T08dBtqgq4hkuxdoX2pYrRHrmi5ir3pNSaYyqMziKjpdB5LAw5aSFxKY1xhEpxTXJ-SqMSMqT3XoNtTmBXPdieDsbTk25XhxbUiEhNnQhIvZX7S8SVDSaTim8sfVWFgMto7d_RmX8sd_3b_9uPugO3GmLN3teacBe2sLgHN8ZN6MB9-NzX5GFPBm_YWJdnTBcZO6gLSTG0maXzC9YWiyGjt0bWRLCx4RzTcmaDxJhNS51h-QC-XMlIHkKvWBT4GBjPoyxCTKUvMu5rT4tIh0J7uUoFfQYdeN3OcWKaW9ZtsY95Qt6WBURSASKpAOHAXie8rC8XuVzsgwVLJ2JvBK8eLFanSWNgEs5jMqgp90jpeK7CVEs0fkbs1OgcPePAbguXpDFTZfIbKw687JrJwNhTI13g4rySEcRhYh478KhGZteT0NakJE7rgNzA7EZXN1uK2Vl1iXkceoqM_5N_d-sF7BwejUfJaDAZPoWbgc098aQb-LvQW6_O8RlcN9_Xs3L1vNFEBl-vGtO_ACSedTs |
| linkToPdf | http://cvtisr.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMw1V1Lb9NAEB6VgiouvB-GAotULggrfux67QNCQIgIaaMcQOrNHa_HNFLkhDgF9a_x65j1C4Iqbj1w9Y7sXfub2W-88wA4UEUuA2LmRhrZQcmIdc4UgRuyKjG7pdw3daLwoZ5O4-PjZLYDP7tcGBtW2dnE2lDnS2P_kQ-CiD0Frdm9GBRtWMRsOHqz-ubaDlL2pLVrp9FAZELnP9h9q16Ph_ytXwTB6MPn9x_dtsOAa6RWG1ehr-OE7PEroYwLT2tESZkymEcGtcIiUYYdtpB5FVISURxLZDk_4xUqHfJ9r8BVbYuW12GDs_7_Dm-tEdObJiWQ560HK6K1DSvTsdzaBOteARcR3L_jNP_Y-EY3_-dXdgtutHRbvG304zbsUHkH9o7agIK78GmE7HdPx6_EEVanAstcDJv2UoJsvuniXHQtZNgUbki0cW1isqCsmtvQMWGTVedU3YMvl7KS-7BbLkt6CEIWUR4RZdpXufTRQxVhqNAr4kzxY8iBl933Tk1be922AFmk7INZcKQ1ONIaHA4c9MKrpuTIxWLvLHB6EVsnvL6wXH9NW7OTSpmwmc2kx6ooizjMUJPxc-asBgvyjAP7HXTS1nhV6W_cOPC8H2azY8-SsKTlWS2jmNkkMnHgQYPSfiah7VTJTNcBvYXfraluj5Tz07q0eRJ6MW8Jj_49rWewx0BOD8fTyWO4HtiEFE-7gb8Pu5v1GT2Ba-b7Zl6tn9YqKeDksgH9C6xUfHo |
| openUrl | ctx_ver=Z39.88-2004&ctx_enc=info%3Aofi%2Fenc%3AUTF-8&rfr_id=info%3Asid%2Fsummon.serialssolutions.com&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Ajournal&rft.genre=article&rft.atitle=FastANI%2C+Mash+and+Dashing+equally+differentiate+between+Klebsiella+species&rft.jtitle=PeerJ+%28San+Francisco%2C+CA%29&rft.au=Hern%C3%A1ndez-Salmer%C3%B3n%2C+Julie+E&rft.au=Moreno-Hagelsieb%2C+Gabriel&rft.date=2022-07-21&rft.pub=PeerJ%2C+Inc&rft.eissn=2167-8359&rft_id=info:doi/10.7717%2Fpeerj.13784&rft.externalDBID=HAS_PDF_LINK |
| thumbnail_l | http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/lc.gif&issn=2167-8359&client=summon |
| thumbnail_m | http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/mc.gif&issn=2167-8359&client=summon |
| thumbnail_s | http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/sc.gif&issn=2167-8359&client=summon |