Joá yellow blotch-associated virus, a new alphanucleorhabdovirus from a wild solanaceous plant in Brazil

We identified a novel plant rhabdovirus infecting native joá ( Solanum aculeatissimum ) plants in Brazil. Infected plants showed yellow blotches on the leaves, and typical enveloped bacilliform rhabdovirus particles associated with the nucleus were seen in thin sections by electron microscopy. The v...

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Vydáno v:	Archives of virology Ročník 166; číslo 6; s. 1615 - 1622
Hlavní autoři:	Dietzgen, Ralf G., Bejerman, Nicolas E., Mei, Yongyu, Jee, Charmaine Lim Jing, Chabi-Jesus, Camila, Freitas-Astúa, Juliana, Veras, Solange M., Kitajima, Elliot W.
Médium:	Journal Article
Jazyk:	angličtina
Vydáno:	Vienna Springer Vienna 01.06.2021 Springer Nature B.V
Témata:	Biomedical and Life Sciences Biomedicine Blotch Brazil Disease transmission Dwarf disease Electron microscopy Flowers & plants Gene mapping genes Genomes Infectious Diseases L gene L protein Medical Microbiology New species Nucleotide sequence Nucleotides Original Article Phylogeny Polymerase chain reaction Potato yellow dwarf virus Rhabdoviridae RNA Solanum aculeatissimum tomatoes Virology Viruses Brazil
ISSN:	0304-8608, 1432-8798, 1432-8798
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Abstract	We identified a novel plant rhabdovirus infecting native joá ( Solanum aculeatissimum ) plants in Brazil. Infected plants showed yellow blotches on the leaves, and typical enveloped bacilliform rhabdovirus particles associated with the nucleus were seen in thin sections by electron microscopy. The virus could be graft-transmitted to healthy joá and tomato plants but was not mechanically transmissible. RT-PCR using degenerate plant rhabdovirus L gene primers yielded an amplicon from extracted total RNA, the sequence of which was similar to those of alphanucleorhabdoviruses. Based on close sequence matches, especially with the type member potato yellow dwarf virus (PYDV), we adopted a degenerate-primer-walking strategy towards both genome ends. The complete genome of joá yellow blotch-associated virus (JYBaV) is comprised of 12,965 nucleotides, is less than 75% identical to that of its closest relative PYDV, and clusters with PYDV and other alphanucleorhabdoviruses in L protein phylogenetic trees, suggesting that it should be taxonomically classified in a new species in the genus Alphanucleorhabdovirus , family Rhabdoviridae . The genome organization of JYBaV is typical of the ‘PYDV-like’ subgroup of alphanucleorhabdoviruses, with seven genes ( N-X-P-Y-M-G-L ) separated by conserved intergenic regions and flanked by partly complementary 3' leader and 5' trailer regions.
AbstractList	We identified a novel plant rhabdovirus infecting native joá (Solanum aculeatissimum) plants in Brazil. Infected plants showed yellow blotches on the leaves, and typical enveloped bacilliform rhabdovirus particles associated with the nucleus were seen in thin sections by electron microscopy. The virus could be graft-transmitted to healthy joá and tomato plants but was not mechanically transmissible. RT-PCR using degenerate plant rhabdovirus L gene primers yielded an amplicon from extracted total RNA, the sequence of which was similar to those of alphanucleorhabdoviruses. Based on close sequence matches, especially with the type member potato yellow dwarf virus (PYDV), we adopted a degenerate-primer-walking strategy towards both genome ends. The complete genome of joá yellow blotch-associated virus (JYBaV) is comprised of 12,965 nucleotides, is less than 75% identical to that of its closest relative PYDV, and clusters with PYDV and other alphanucleorhabdoviruses in L protein phylogenetic trees, suggesting that it should be taxonomically classified in a new species in the genus Alphanucleorhabdovirus, family Rhabdoviridae. The genome organization of JYBaV is typical of the 'PYDV-like' subgroup of alphanucleorhabdoviruses, with seven genes (N-X-P-Y-M-G-L) separated by conserved intergenic regions and flanked by partly complementary 3' leader and 5' trailer regions.We identified a novel plant rhabdovirus infecting native joá (Solanum aculeatissimum) plants in Brazil. Infected plants showed yellow blotches on the leaves, and typical enveloped bacilliform rhabdovirus particles associated with the nucleus were seen in thin sections by electron microscopy. The virus could be graft-transmitted to healthy joá and tomato plants but was not mechanically transmissible. RT-PCR using degenerate plant rhabdovirus L gene primers yielded an amplicon from extracted total RNA, the sequence of which was similar to those of alphanucleorhabdoviruses. Based on close sequence matches, especially with the type member potato yellow dwarf virus (PYDV), we adopted a degenerate-primer-walking strategy towards both genome ends. The complete genome of joá yellow blotch-associated virus (JYBaV) is comprised of 12,965 nucleotides, is less than 75% identical to that of its closest relative PYDV, and clusters with PYDV and other alphanucleorhabdoviruses in L protein phylogenetic trees, suggesting that it should be taxonomically classified in a new species in the genus Alphanucleorhabdovirus, family Rhabdoviridae. The genome organization of JYBaV is typical of the 'PYDV-like' subgroup of alphanucleorhabdoviruses, with seven genes (N-X-P-Y-M-G-L) separated by conserved intergenic regions and flanked by partly complementary 3' leader and 5' trailer regions. We identified a novel plant rhabdovirus infecting native joá (Solanum aculeatissimum) plants in Brazil. Infected plants showed yellow blotches on the leaves, and typical enveloped bacilliform rhabdovirus particles associated with the nucleus were seen in thin sections by electron microscopy. The virus could be graft-transmitted to healthy joá and tomato plants but was not mechanically transmissible. RT-PCR using degenerate plant rhabdovirus L gene primers yielded an amplicon from extracted total RNA, the sequence of which was similar to those of alphanucleorhabdoviruses. Based on close sequence matches, especially with the type member potato yellow dwarf virus (PYDV), we adopted a degenerate-primer-walking strategy towards both genome ends. The complete genome of joá yellow blotch-associated virus (JYBaV) is comprised of 12,965 nucleotides, is less than 75% identical to that of its closest relative PYDV, and clusters with PYDV and other alphanucleorhabdoviruses in L protein phylogenetic trees, suggesting that it should be taxonomically classified in a new species in the genus Alphanucleorhabdovirus, family Rhabdoviridae. The genome organization of JYBaV is typical of the 'PYDV-like' subgroup of alphanucleorhabdoviruses, with seven genes (N-X-P-Y-M-G-L) separated by conserved intergenic regions and flanked by partly complementary 3' leader and 5' trailer regions. We identified a novel plant rhabdovirus infecting native joá ( Solanum aculeatissimum ) plants in Brazil. Infected plants showed yellow blotches on the leaves, and typical enveloped bacilliform rhabdovirus particles associated with the nucleus were seen in thin sections by electron microscopy. The virus could be graft-transmitted to healthy joá and tomato plants but was not mechanically transmissible. RT-PCR using degenerate plant rhabdovirus L gene primers yielded an amplicon from extracted total RNA, the sequence of which was similar to those of alphanucleorhabdoviruses. Based on close sequence matches, especially with the type member potato yellow dwarf virus (PYDV), we adopted a degenerate-primer-walking strategy towards both genome ends. The complete genome of joá yellow blotch-associated virus (JYBaV) is comprised of 12,965 nucleotides, is less than 75% identical to that of its closest relative PYDV, and clusters with PYDV and other alphanucleorhabdoviruses in L protein phylogenetic trees, suggesting that it should be taxonomically classified in a new species in the genus Alphanucleorhabdovirus , family Rhabdoviridae . The genome organization of JYBaV is typical of the ‘PYDV-like’ subgroup of alphanucleorhabdoviruses, with seven genes ( N-X-P-Y-M-G-L ) separated by conserved intergenic regions and flanked by partly complementary 3' leader and 5' trailer regions.
Author	Veras, Solange M. Dietzgen, Ralf G. Jee, Charmaine Lim Jing Bejerman, Nicolas E. Freitas-Astúa, Juliana Chabi-Jesus, Camila Kitajima, Elliot W. Mei, Yongyu
Author_xml	– sequence: 1 givenname: Ralf G. orcidid: 0000-0002-7772-2250 surname: Dietzgen fullname: Dietzgen, Ralf G. email: r.dietzgen@uq.edu.au organization: Queensland Alliance for Agriculture and Food Innovation, The University of Queensland, School of Chemistry and Molecular Biosciences, The University of Queensland – sequence: 2 givenname: Nicolas E. surname: Bejerman fullname: Bejerman, Nicolas E. organization: Instituto de Patología Vegetal–Centro de Investigaciones Agropecuarias–Instituto Nacional de Tecnología Agropecuaria (IPAVE-CIAP-INTA), Consejo Nacional de Investigaciones Científicas y Técnicas, Unidad de Fitopatología y Modelización Agrícola – sequence: 3 givenname: Yongyu surname: Mei fullname: Mei, Yongyu organization: Queensland Alliance for Agriculture and Food Innovation, The University of Queensland, School of Chemistry and Molecular Biosciences, The University of Queensland – sequence: 4 givenname: Charmaine Lim Jing surname: Jee fullname: Jee, Charmaine Lim Jing organization: Queensland Alliance for Agriculture and Food Innovation, The University of Queensland, School of Chemistry and Molecular Biosciences, The University of Queensland – sequence: 5 givenname: Camila surname: Chabi-Jesus fullname: Chabi-Jesus, Camila organization: Instituto Biológico – sequence: 6 givenname: Juliana surname: Freitas-Astúa fullname: Freitas-Astúa, Juliana organization: Instituto Biológico, Embrapa Cassava and Fruits – sequence: 7 givenname: Solange M. surname: Veras fullname: Veras, Solange M. organization: Departamento de Ciências Fundamentais e Desenvolvimento Agrícola, Universidade Federal do Amazonas – sequence: 8 givenname: Elliot W. surname: Kitajima fullname: Kitajima, Elliot W. organization: Departmento de Fitopatologia e Nematologia, ESALQ/USP
BackLink	https://www.ncbi.nlm.nih.gov/pubmed/33774730$$D View this record in MEDLINE/PubMed
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Cites_doi	10.1016/j.virusres.2016.10.010 10.1007/s10658-008-9339-5 10.3389/fmicb.2020.588427 10.1146/annurev.phyto.43.011205.141136 10.1016/j.coviro.2018.11.002 10.1007/s11262-013-0911-5 10.1016/j.virusres.2011.09.004 10.1093/molbev/msy096 10.1099/jgv.0.001051 10.1007/s00705-020-04731-2 10.1094/PDIS-05-17-0737-PDN 10.1016/j.virusres.2020.197942 10.3389/fpls.2012.00014 10.1371/journal.ppat.1005223 10.1111/jph.12256 10.17660/ActaHortic.2018.1193.5 10.1590/1676-0611-bn-2019-0932 10.1099/jgv.0.000771 10.1074/jbc.M807017200 10.1016/j.virol.2010.03.013
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Snippet	We identified a novel plant rhabdovirus infecting native joá ( Solanum aculeatissimum ) plants in Brazil. Infected plants showed yellow blotches on the leaves,... We identified a novel plant rhabdovirus infecting native joá (Solanum aculeatissimum) plants in Brazil. Infected plants showed yellow blotches on the leaves,...
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SubjectTerms	Biomedical and Life Sciences Biomedicine Blotch Brazil Disease transmission Dwarf disease Electron microscopy Flowers & plants Gene mapping genes Genomes Infectious Diseases L gene L protein Medical Microbiology New species Nucleotide sequence Nucleotides Original Article Phylogeny Polymerase chain reaction Potato yellow dwarf virus Rhabdoviridae RNA Solanum aculeatissimum tomatoes Virology Viruses
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Title	Joá yellow blotch-associated virus, a new alphanucleorhabdovirus from a wild solanaceous plant in Brazil
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