Past, present, and future of arenavirus taxonomy
Until recently, members of the monogeneric family Arenaviridae (arenaviruses) have been known to infect only muroid rodents and, in one case, possibly phyllostomid bats. The paradigm of arenaviruses exclusively infecting small mammals shifted dramatically when several groups independently published...
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| Published in: | Archives of virology Vol. 160; no. 7; pp. 1851 - 1874 |
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| Main Authors: | , , , , , , , , , , , , , , , |
| Format: | Journal Article |
| Language: | English |
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Vienna
Springer Vienna
01.07.2015
Springer Nature B.V |
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| ISSN: | 0304-8608, 1432-8798, 1432-8798 |
| Online Access: | Get full text |
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| Abstract | Until recently, members of the monogeneric family Arenaviridae (arenaviruses) have been known to infect only muroid rodents and, in one case, possibly phyllostomid bats. The paradigm of arenaviruses exclusively infecting small mammals shifted dramatically when several groups independently published the detection and isolation of a divergent group of arenaviruses in captive alethinophidian snakes. Preliminary phylogenetic analyses suggest that these reptilian arenaviruses constitute a sister clade to mammalian arenaviruses. Here, the members of the International Committee on Taxonomy of Viruses (ICTV) Arenaviridae Study Group, together with other experts, outline the taxonomic reorganization of the family Arenaviridae to accommodate reptilian arenaviruses and other recently discovered mammalian arenaviruses and to improve compliance with the Rules of the International Code of Virus Classification and Nomenclature (ICVCN). PAirwise Sequence Comparison (PASC) of arenavirus genomes and NP amino acid pairwise distances support the modification of the present classification. As a result, the current genus Arenavirus is replaced by two genera, Mammarenavirus and Reptarenavirus, which are established to accommodate mammalian and reptilian arenaviruses, respectively, in the same family. The current species landscape among mammalian arenaviruses is upheld, with two new species added for Lunk and Merino Walk viruses and minor corrections to the spelling of some names. The published snake arenaviruses are distributed among three new separate reptarenavirus species. Finally, a non-Latinized binomial species name scheme is adopted for all arenavirus species. In addition, the current virus abbreviations have been evaluated, and some changes are introduced to unequivocally identify each virus in electronic databases, manuscripts, and oral proceedings. |
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| AbstractList | Until recently, members of the monogeneric family Arenaviridae (arenaviruses) have been known to infect only muroid rodents and, in one case, possibly phyllostomid bats. The paradigm of arenaviruses exclusively infecting small mammals shifted dramatically when several groups independently published the detection and isolation of a divergent group of arenaviruses in captive alethinophidian snakes. Preliminary phylogenetic analyses suggest that these reptilian arenaviruses constitute a sister clade to mammalian arenaviruses. Here, the members of the International Committee on Taxonomy of Viruses (ICTV) Arenaviridae Study Group, together with other experts, outline the taxonomic reorganization of the family Arenaviridae to accommodate reptilian arenaviruses and other recently discovered mammalian arenaviruses and to improve compliance with the Rules of the International Code of Virus Classification and Nomenclature (ICVCN). PAirwise Sequence Comparison (PASC) of arenavirus genomes and NP amino acid pairwise distances support the modification of the present classification. As a result, the current genus Arenavirus is replaced by two genera, Mammarenavirus and Reptarenavirus, which are established to accommodate mammalian and reptilian arenaviruses, respectively, in the same family. The current species landscape among mammalian arenaviruses is upheld, with two new species added for Lunk and Merino Walk viruses and minor corrections to the spelling of some names. The published snake arenaviruses are distributed among three new separate reptarenavirus species. Finally, a non-Latinized binomial species name scheme is adopted for all arenavirus species. In addition, the current virus abbreviations have been evaluated, and some changes are introduced to unequivocally identify each virus in electronic databases, manuscripts, and oral proceedings. Until recently, members of the monogeneric family Arenaviridae (arenaviruses) have been known to infect only muroid rodents and, in one case, possibly phyllostomid bats. The paradigm of arenaviruses exclusively infecting small mammals shifted dramatically when several groups independently published the detection and isolation of a divergent group of arenaviruses in captive alethinophidian snakes. Preliminary phylogenetic analyses suggest that these reptilian arenaviruses constitute a sister clade to mammalian arenaviruses. Here, the members of the International Committee on Taxonomy of Viruses (ICTV) Arenaviridae Study Group, together with other experts, outline the taxonomic reorganization of the family Arenaviridae to accommodate reptilian arenaviruses and other recently discovered mammalian arenaviruses and to improve compliance with the Rules of the International Code of Virus Classification and Nomenclature (ICVCN). PAirwise Sequence Comparison (PASC) of arenavirus genomes and NP amino acid pairwise distances support the modification of the present classification. As a result, the current genus Arenavirus is replaced by two genera, Mammarenavirus and Reptarenavirus , which are established to accommodate mammalian and reptilian arenaviruses, respectively, in the same family. The current species landscape among mammalian arenaviruses is upheld, with two new species added for Lunk and Merino Walk viruses and minor corrections to the spelling of some names. The published snake arenaviruses are distributed among three new separate reptarenavirus species. Finally, a non-Latinized binomial species name scheme is adopted for all arenavirus species. In addition, the current virus abbreviations have been evaluated, and some changes are introduced to unequivocally identify each virus in electronic databases, manuscripts, and oral proceedings. Until recently, members of the monogeneric family Arenaviridae (arenaviruses) have been known to infect only muroid rodents and, in one case, possibly phyllostomid bats. The paradigm of arenaviruses exclusively infecting small mammals shifted dramatically when several groups independently published the detection and isolation of a divergent group of arenaviruses in captive alethinophidian snakes. Preliminary phylogenetic analyses suggest that these reptilian arenaviruses constitute a sister clade to mammalian arenaviruses. Here, the members of the International Committee on Taxonomy of Viruses (ICTV) Arenaviridae Study Group, together with other experts, outline the taxonomic reorganization of the family Arenaviridae to accommodate reptilian arenaviruses and other recently discovered mammalian arenaviruses and to improve compliance with the Rules of the International Code of Virus Classification and Nomenclature (ICVCN). PAirwise Sequence Comparison (PASC) of arenavirus genomes and NP amino acid pairwise distances support the modification of the present classification. As a result, the current genus Arenavirus is replaced by two genera, Mammarenavirus and Reptarenavirus, which are established to accommodate mammalian and reptilian arenaviruses, respectively, in the same family. The current species landscape among mammalian arenaviruses is upheld, with two new species added for Lunk and Merino Walk viruses and minor corrections to the spelling of some names. The published snake arenaviruses are distributed among three new separate reptarenavirus species. Finally, a non-Latinized binomial species name scheme is adopted for all arenavirus species. In addition, the current virus abbreviations have been evaluated, and some changes are introduced to unequivocally identify each virus in electronic databases, manuscripts, and oral proceedings.Until recently, members of the monogeneric family Arenaviridae (arenaviruses) have been known to infect only muroid rodents and, in one case, possibly phyllostomid bats. The paradigm of arenaviruses exclusively infecting small mammals shifted dramatically when several groups independently published the detection and isolation of a divergent group of arenaviruses in captive alethinophidian snakes. Preliminary phylogenetic analyses suggest that these reptilian arenaviruses constitute a sister clade to mammalian arenaviruses. Here, the members of the International Committee on Taxonomy of Viruses (ICTV) Arenaviridae Study Group, together with other experts, outline the taxonomic reorganization of the family Arenaviridae to accommodate reptilian arenaviruses and other recently discovered mammalian arenaviruses and to improve compliance with the Rules of the International Code of Virus Classification and Nomenclature (ICVCN). PAirwise Sequence Comparison (PASC) of arenavirus genomes and NP amino acid pairwise distances support the modification of the present classification. As a result, the current genus Arenavirus is replaced by two genera, Mammarenavirus and Reptarenavirus, which are established to accommodate mammalian and reptilian arenaviruses, respectively, in the same family. The current species landscape among mammalian arenaviruses is upheld, with two new species added for Lunk and Merino Walk viruses and minor corrections to the spelling of some names. The published snake arenaviruses are distributed among three new separate reptarenavirus species. Finally, a non-Latinized binomial species name scheme is adopted for all arenavirus species. In addition, the current virus abbreviations have been evaluated, and some changes are introduced to unequivocally identify each virus in electronic databases, manuscripts, and oral proceedings. |
| Author | Stenglein, Mark D Salvato, Maria S Lukashevich, Igor S Peters, Clarence J Emonet, Sébastien Romanowski, Victor de la Torre, Juan Carlos Clegg, Christopher S Clawson, Anna N DeRisi, Joseph L Radoshitzky, Sheli R Bào, Yīmíng Gonzalez, Jean-Paul Buchmeier, Michael J Charrel, Rémi N Kuhn, Jens H |
| Author_xml | – sequence: 1 fullname: Radoshitzky, Sheli R – sequence: 2 fullname: Bào, Yīmíng – sequence: 3 fullname: Buchmeier, Michael J – sequence: 4 fullname: Charrel, Rémi N – sequence: 5 fullname: Clawson, Anna N – sequence: 6 fullname: Clegg, Christopher S – sequence: 7 fullname: DeRisi, Joseph L – sequence: 8 fullname: Emonet, Sébastien – sequence: 9 fullname: Gonzalez, Jean-Paul – sequence: 10 fullname: Kuhn, Jens H – sequence: 11 fullname: Lukashevich, Igor S – sequence: 12 fullname: Peters, Clarence J – sequence: 13 fullname: Romanowski, Victor – sequence: 14 fullname: Salvato, Maria S – sequence: 15 fullname: Stenglein, Mark D – sequence: 16 fullname: de la Torre, Juan Carlos |
| BackLink | https://www.ncbi.nlm.nih.gov/pubmed/25935216$$D View this record in MEDLINE/PubMed |
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| Issue | 7 |
| Keywords | TaxoProp PASC Bat virus Inclusion body disease International Committee on Taxonomy of Viruses Virus nomenclature Arenavirid Mammarenavirus Viral hemorrhagic fever Arenavirus Reptarenavirus Virus taxonomy Bibdavirus Snake virus ICTV Rodent virus Virus classification |
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262 J Salazar-Bravo (2418_CR119) 2002; 262 MN Cajimat (2418_CR31) 2004; 102 2418_CR141 2418_CR10 MS Salvato (2418_CR121) 1989; 173 Y Bao (2418_CR11) 2008 JD Frame (2418_CR58) 1970; 19 RE Matthews (2418_CR92) 1982; 17 RN Charrel (2418_CR41) 2003; 317 D Garcin (2418_CR62) 1990; 64 TI Cornu (2418_CR44) 2001; 75 T Strecker (2418_CR130) 2003; 77 M Hass (2418_CR66) 2006; 80 MS Salvato (2418_CR124) 2011 M Perez (2418_CR107) 2003; 100 MJ Adams (2418_CR3) 2013; 158 AS Parodi (2418_CR105) 1958; 30 MN Cajimat (2418_CR34) 2013; 178 MS Salvato (2418_CR122) 1992; 22 S Kunz (2418_CR79) 2003; 314 R Raju (2418_CR112) 1990; 174 BJ Meyer (2418_CR97) 1994; 68 TG Phan (2418_CR108) 2011; 7 C Armstrong (2418_CR7) 1934; 49 CG Albariño (2418_CR4) 1998; 16 RN Charrel (2418_CR40) 2003; 57 K Tamura (2418_CR131) 2013; 30 WG Downs (2418_CR52) 1963; 12 RN Charrel (2418_CR39) 2002; 296 AJ Dalton (2418_CR48) 1968; 2 B Muhire (2418_CR99) 2013; 158 FA Murphy (2418_CR101) 1970; 6 L Li (2418_CR86) 2010; 84 R Bodewes (2418_CR14) 2013; 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| SubjectTerms | amino acids Animals Arenaviridae Infections - history Arenaviridae Infections - veterinary Arenaviridae Infections - virology Arenavirus Arenavirus - classification Arenavirus - genetics Arenavirus - isolation & purification Biochemistry Biomedical and Life Sciences Biomedicine Chiroptera compliance experts genome Genomes History, 20th Century History, 21st Century Humans Infectious Diseases Mammarenavirus Medical Microbiology Merino National libraries new species Phylogeny Proteins RNA polymerase rodents sequence analysis small mammals snakes Taxonomy Virology Virology - history Virology - trends Virology Division News Viruses |
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| Title | Past, present, and future of arenavirus taxonomy |
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