Genome structure of caulobacter phage phiCb5
The complete genome sequence of caulobacter phage phiCb5 has been determined, and four open reading frames (ORFs) have been identified and characterized. As for related phages, the ORFs code for maturation, coat, replicase, and lysis proteins, but unlike other Leviviridae members, the lysis protein...
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| Veröffentlicht in: | Journal of virology Jg. 85; H. 9; S. 4628 |
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01.05.2011
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| Abstract | The complete genome sequence of caulobacter phage phiCb5 has been determined, and four open reading frames (ORFs) have been identified and characterized. As for related phages, the ORFs code for maturation, coat, replicase, and lysis proteins, but unlike other Leviviridae members, the lysis protein gene of phiCb5 entirely overlaps with the replicase in a different reading frame. The lysis protein of phiCb5 is about two times longer than that of the distantly related MS2 phage and presumably contains two transmembrane helices. Analysis of the proposed genome secondary structure revealed a stable 5' stem-loop, similar to other phages, and a substantially shorter 3' untranslated region (UTR) structure with only three stem-loops. |
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| AbstractList | The complete genome sequence of caulobacter phage phiCb5 has been determined, and four open reading frames (ORFs) have been identified and characterized. As for related phages, the ORFs code for maturation, coat, replicase, and lysis proteins, but unlike other Leviviridae members, the lysis protein gene of phiCb5 entirely overlaps with the replicase in a different reading frame. The lysis protein of phiCb5 is about two times longer than that of the distantly related MS2 phage and presumably contains two transmembrane helices. Analysis of the proposed genome secondary structure revealed a stable 5' stem-loop, similar to other phages, and a substantially shorter 3' untranslated region (UTR) structure with only three stem-loops. The complete genome sequence of caulobacter phage phiCb5 has been determined, and four open reading frames (ORFs) have been identified and characterized. As for related phages, the ORFs code for maturation, coat, replicase, and lysis proteins, but unlike other Leviviridae members, the lysis protein gene of phiCb5 entirely overlaps with the replicase in a different reading frame. The lysis protein of phiCb5 is about two times longer than that of the distantly related MS2 phage and presumably contains two transmembrane helices. Analysis of the proposed genome secondary structure revealed a stable 5' stem-loop, similar to other phages, and a substantially shorter 3' untranslated region (UTR) structure with only three stem-loops.The complete genome sequence of caulobacter phage phiCb5 has been determined, and four open reading frames (ORFs) have been identified and characterized. As for related phages, the ORFs code for maturation, coat, replicase, and lysis proteins, but unlike other Leviviridae members, the lysis protein gene of phiCb5 entirely overlaps with the replicase in a different reading frame. The lysis protein of phiCb5 is about two times longer than that of the distantly related MS2 phage and presumably contains two transmembrane helices. Analysis of the proposed genome secondary structure revealed a stable 5' stem-loop, similar to other phages, and a substantially shorter 3' untranslated region (UTR) structure with only three stem-loops. |
| Author | Tars, Kaspars Voronkova, Tatyana Kazaks, Andris Dishlers, Andris Rumnieks, Janis |
| Author_xml | – sequence: 1 givenname: Andris surname: Kazaks fullname: Kazaks, Andris organization: Biomedical Research and Study Center, Ratsupites 1, LV 1067 Riga, Latvia – sequence: 2 givenname: Tatyana surname: Voronkova fullname: Voronkova, Tatyana – sequence: 3 givenname: Janis surname: Rumnieks fullname: Rumnieks, Janis – sequence: 4 givenname: Andris surname: Dishlers fullname: Dishlers, Andris – sequence: 5 givenname: Kaspars surname: Tars fullname: Tars, Kaspars |
| BackLink | https://www.ncbi.nlm.nih.gov/pubmed/21325422$$D View this record in MEDLINE/PubMed |
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| CitedBy_id | crossref_primary_10_1016_j_jmb_2016_08_025 crossref_primary_10_1038_s41467_019_11126_8 crossref_primary_10_1186_s12951_019_0497_8 crossref_primary_10_1016_j_mib_2020_09_015 crossref_primary_10_1128_JB_00929_12 crossref_primary_10_1128_MMBR_00011_11 crossref_primary_10_1038_s41467_020_19860_0 crossref_primary_10_1073_pnas_1908291116 crossref_primary_10_1186_s40168_022_01371_3 crossref_primary_10_1016_j_jmb_2013_08_025 crossref_primary_10_1074_jbc_TM118_001773 crossref_primary_10_1128_jb_00384_23 crossref_primary_10_1186_1471_2180_12_277 |
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| References_xml | – reference: 16940544 - J Virol. 2006 Sep;80(18):9326-30 – reference: 11423662 - Science. 2001 Jun 22;292(5525):2326-9 – reference: 5969754 - J Gen Microbiol. 1966 Nov;45(2):347-53 – reference: 7530049 - Biochemistry. 1995 Jan 31;34(4):1261-6 – reference: 12029168 - J Gen Virol. 2002 Jun;83(Pt 6):1523-33 – reference: 19559027 - J Mol Biol. 2009 Aug 21;391(3):635-47 – reference: 2840287 - EMBO J. 1988 Mar;7(3):867-73 – reference: 17488738 - Mol Biol Evol. 2007 Aug;24(8):1596-9 – reference: 7723040 - J Mol Biol. 1995 Apr 14;247(5):903-17 – reference: 6347247 - Biochemistry. 1983 May 24;22(11):2601-10 – reference: 10588893 - J Mol Biol. 1999 Dec 10;294(4):875-84 – reference: 14328417 - J Gen Microbiol. 1965 Apr;39:95-107 – reference: 2207135 - Biochim Biophys Acta. 1990 Aug 27;1050(1-3):104-9 – reference: 11152613 - J Mol Biol. 2001 Jan 19;305(3):567-80 – reference: 18424795 - Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W70-4 – reference: 7831817 - Virology. 1995 Jan 10;206(1):611-25 – reference: 4611493 - Biochim Biophys Acta. 1974 Dec 6;374(2):238-51 – reference: 3912168 - EMBO J. 1985 Dec 1;4(12):3315-20 |
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| SubjectTerms | Bacteriophages - genetics Caulobacter - virology Genome, Viral Leviviridae - genetics Molecular Sequence Data Open Reading Frames RNA, Viral - genetics Sequence Analysis, DNA |
| Title | Genome structure of caulobacter phage phiCb5 |
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