Discovery of a novel Parvovirinae virus, porcine parvovirus 7, by metagenomic sequencing of porcine rectal swabs

Parvoviruses are a diverse group of viruses containing some of the smallest known species that are capable of infecting a wide range of animals. Metagenomic sequencing of pooled rectal swabs from adult pigs identified a 4103-bp contig consisting of two major open reading frames encoding proteins of...

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Vydané v:Virus genes Ročník 52; číslo 4; s. 564 - 567
Hlavní autori: Palinski, Rachel M., Mitra, Namita, Hause, Ben M.
Médium: Journal Article
Jazyk:English
Vydavateľské údaje: New York Springer US 01.08.2016
Springer Nature B.V
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ISSN:0920-8569, 1572-994X
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Abstract Parvoviruses are a diverse group of viruses containing some of the smallest known species that are capable of infecting a wide range of animals. Metagenomic sequencing of pooled rectal swabs from adult pigs identified a 4103-bp contig consisting of two major open reading frames encoding proteins of 672 and 469 amino acids (aa) in length. BLASTP analysis of the 672-aa protein found 42.4 % identity to fruit bat ( Eidolon helvum ) parvovirus 2 (EhPV2) and 37.9 % to turkey parvovirus (TuPV) TP1-2012/HUN NS1 proteins. The 469-aa protein had no significant similarity to known proteins. Genetic and phylogenetic analyses suggest that PPV7, EhPV2, and TuPV represent a novel genus in the family Parvoviridae . Quantitative PCR screening of 182 porcine diagnostic samples found a total of 16 positives (8.6 %). Together, these data suggest that PPV7 is a highly divergent novel parvovirus prevalent within the US swine.
AbstractList Parvoviruses are a diverse group of viruses containing some of the smallest known species that are capable of infecting a wide range of animals. Metagenomic sequencing of pooled rectal swabs from adult pigs identified a 4103-bp contig consisting of two major open reading frames encoding proteins of 672 and 469 amino acids (aa) in length. BLASTP analysis of the 672-aa protein found 42.4 % identity to fruit bat (Eidolon helvum) parvovirus 2 (EhPV2) and 37.9 % to turkey parvovirus (TuPV) TP1-2012/HUN NS1 proteins. The 469-aa protein had no significant similarity to known proteins. Genetic and phylogenetic analyses suggest that PPV7, EhPV2, and TuPV represent a novel genus in the family Parvoviridae. Quantitative PCR screening of 182 porcine diagnostic samples found a total of 16 positives (8.6 %). Together, these data suggest that PPV7 is a highly divergent novel parvovirus prevalent within the US swine.
Parvoviruses are a diverse group of viruses containing some of the smallest known species that are capable of infecting a wide range of animals. Metagenomic sequencing of pooled rectal swabs from adult pigs identified a 4103-bp contig consisting of two major open reading frames encoding proteins of 672 and 469 amino acids (aa) in length. BLASTP analysis of the 672-aa protein found 42.4 % identity to fruit bat (Eidolon helvum) parvovirus 2 (EhPV2) and 37.9 % to turkey parvovirus (TuPV) TP1-2012/HUN NS1 proteins. The 469-aa protein had no significant similarity to known proteins. Genetic and phylogenetic analyses suggest that PPV7, EhPV2, and TuPV represent a novel genus in the family Parvoviridae. Quantitative PCR screening of 182 porcine diagnostic samples found a total of 16 positives (8.6 %). Together, these data suggest that PPV7 is a highly divergent novel parvovirus prevalent within the US swine.
Parvoviruses are a diverse group of viruses containing some of the smallest known species that are capable of infecting a wide range of animals. Metagenomic sequencing of pooled rectal swabs from adult pigs identified a 4103-bp contig consisting of two major open reading frames encoding proteins of 672 and 469 amino acids (aa) in length. BLASTP analysis of the 672-aa protein found 42.4 % identity to fruit bat ( Eidolon helvum ) parvovirus 2 (EhPV2) and 37.9 % to turkey parvovirus (TuPV) TP1-2012/HUN NS1 proteins. The 469-aa protein had no significant similarity to known proteins. Genetic and phylogenetic analyses suggest that PPV7, EhPV2, and TuPV represent a novel genus in the family Parvoviridae . Quantitative PCR screening of 182 porcine diagnostic samples found a total of 16 positives (8.6 %). Together, these data suggest that PPV7 is a highly divergent novel parvovirus prevalent within the US swine.
Author Hause, Ben M.
Palinski, Rachel M.
Mitra, Namita
Author_xml – sequence: 1
  givenname: Rachel M.
  surname: Palinski
  fullname: Palinski, Rachel M.
  organization: Kansas State Department of Diagnostic Medicine and Pathobiology
– sequence: 2
  givenname: Namita
  surname: Mitra
  fullname: Mitra, Namita
  organization: Kansas State Veterinary Diagnostic Laboratory
– sequence: 3
  givenname: Ben M.
  surname: Hause
  fullname: Hause, Ben M.
  email: bhause@vet.k-state.edu
  organization: Kansas State Department of Diagnostic Medicine and Pathobiology, Kansas State Veterinary Diagnostic Laboratory
BackLink https://www.ncbi.nlm.nih.gov/pubmed/26995221$$D View this record in MEDLINE/PubMed
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Keywords Parvovirus
Swine
Parvoviridae
Fecal
Metagenomic sequencing
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PublicationCentury 2000
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PublicationTitle Virus genes
PublicationTitleAbbrev Virus Genes
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Springer Nature B.V
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Snippet Parvoviruses are a diverse group of viruses containing some of the smallest known species that are capable of infecting a wide range of animals. Metagenomic...
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SubjectTerms adults
amino acids
Animals
Biomedical and Life Sciences
Biomedicine
Chiroptera
Genome, Viral - genetics
Medical Microbiology
metagenomics
Metagenomics - methods
open reading frames
Parvoviridae Infections - virology
Parvovirus, Porcine - genetics
Phylogeny
Plant Sciences
proteins
quantitative polymerase chain reaction
screening
Sequence Analysis, DNA - methods
swine
Swine - virology
Swine Diseases - virology
Ungulate protoparvovirus 1
United States
Virology
viruses
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