Virome of Three Termite Species from Southern Vietnam
Modern metagenomic approaches enable the effective discovery of novel viruses in previously unexplored organisms. Termites are significant ecosystem converters and influencers. As with the majority of tropical forest insects, termites are studied insufficiently, and termite virome remains especially...
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| Vydáno v: | Viruses Ročník 14; číslo 5; s. 860 |
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21.04.2022
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| Abstract | Modern metagenomic approaches enable the effective discovery of novel viruses in previously unexplored organisms. Termites are significant ecosystem converters and influencers. As with the majority of tropical forest insects, termites are studied insufficiently, and termite virome remains especially understudied. Here, we studied the virome of lichenophagous and mycophagous termites (Hospitalitermes bicolor, Macrotermes carbonarius and Odontotermes wallonensis) collected in the Cat Tien National Park (Vietnam). We assembled four full genomes of novel viruses related to Solemoviridae, Lispiviridae, Polycipiviridae and Kolmioviridae. We also found several contigs with relation to Chuviridae and Deltaflexiviridae that did not correspond to complete virus genomes. All the novel viruses clustered phylogenetically with previously identified viruses of the termites. Deltaflexi-like contigs were identified in the fungi-cultivating M. carbonarius and showed homology with viruses recently discovered in the edible basidiomycete mushrooms. |
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| AbstractList | Modern metagenomic approaches enable the effective discovery of novel viruses in previously unexplored organisms. Termites are significant ecosystem converters and influencers. As with the majority of tropical forest insects, termites are studied insufficiently, and termite virome remains especially understudied. Here, we studied the virome of lichenophagous and mycophagous termites (Hospitalitermes bicolor, Macrotermes carbonarius and Odontotermes wallonensis) collected in the Cat Tien National Park (Vietnam). We assembled four full genomes of novel viruses related to Solemoviridae, Lispiviridae, Polycipiviridae and Kolmioviridae. We also found several contigs with relation to Chuviridae and Deltaflexiviridae that did not correspond to complete virus genomes. All the novel viruses clustered phylogenetically with previously identified viruses of the termites. Deltaflexi-like contigs were identified in the fungi-cultivating M. carbonarius and showed homology with viruses recently discovered in the edible basidiomycete mushrooms. Modern metagenomic approaches enable the effective discovery of novel viruses in previously unexplored organisms. Termites are significant ecosystem converters and influencers. As with the majority of tropical forest insects, termites are studied insufficiently, and termite virome remains especially understudied. Here, we studied the virome of lichenophagous and mycophagous termites (Hospitalitermes bicolor, Macrotermes carbonarius and Odontotermes wallonensis) collected in the Cat Tien National Park (Vietnam). We assembled four full genomes of novel viruses related to Solemoviridae, Lispiviridae, Polycipiviridae and Kolmioviridae. We also found several contigs with relation to Chuviridae and Deltaflexiviridae that did not correspond to complete virus genomes. All the novel viruses clustered phylogenetically with previously identified viruses of the termites. Deltaflexi-like contigs were identified in the fungi-cultivating M. carbonarius and showed homology with viruses recently discovered in the edible basidiomycete mushrooms.Modern metagenomic approaches enable the effective discovery of novel viruses in previously unexplored organisms. Termites are significant ecosystem converters and influencers. As with the majority of tropical forest insects, termites are studied insufficiently, and termite virome remains especially understudied. Here, we studied the virome of lichenophagous and mycophagous termites (Hospitalitermes bicolor, Macrotermes carbonarius and Odontotermes wallonensis) collected in the Cat Tien National Park (Vietnam). We assembled four full genomes of novel viruses related to Solemoviridae, Lispiviridae, Polycipiviridae and Kolmioviridae. We also found several contigs with relation to Chuviridae and Deltaflexiviridae that did not correspond to complete virus genomes. All the novel viruses clustered phylogenetically with previously identified viruses of the termites. Deltaflexi-like contigs were identified in the fungi-cultivating M. carbonarius and showed homology with viruses recently discovered in the edible basidiomycete mushrooms. Modern metagenomic approaches enable the effective discovery of novel viruses in previously unexplored organisms. Termites are significant ecosystem converters and influencers. As with the majority of tropical forest insects, termites are studied insufficiently, and termite virome remains especially understudied. Here, we studied the virome of lichenophagous and mycophagous termites ( , and ) collected in the Cat Tien National Park (Vietnam). We assembled four full genomes of novel viruses related to , , and . We also found several contigs with relation to and that did not correspond to complete virus genomes. All the novel viruses clustered phylogenetically with previously identified viruses of the termites. Deltaflexi-like contigs were identified in the fungi-cultivating and showed homology with viruses recently discovered in the edible basidiomycete mushrooms. |
| Author | Zueva, Anna I. Tiunov, Alexei V. Belyaeva, Natalia V. Karganova, Galina G. Litov, Alexander G. Van Thinh, Nguyen |
| AuthorAffiliation | 5 Institute for Translational Medicine and Biotechnology, Sechenov University, 119991 Moscow, Russia 3 Southern Branch, Russian–Vietnamese Tropical Scientific and Technological Center, Ho Chi Minh City 70001, Vietnam; thinh39b@gmail.com 1 Laboratory of Biology of Arboviruses, FSASI Chumakov Federal Scientific Center for Research and Development of Immune-and-Biological Products of RAS, 108819 Moscow, Russia; novosti-wxo@yandex.ru 2 A.N. Severtsov Institute of Ecology and Evolution, 119071 Moscow, Russia; aizueva.ecologist@gmail.com (A.I.Z.); a_tiunov@mail.ru (A.V.T.) 4 Division of Entomology, Faculty of Biology, Lomonosov Moscow State University, 119234 Moscow, Russia; natalia.belyaeva45@gmail.com 6 Division of Virology, Faculty of Biology, Lomonosov Moscow State University, 119234 Moscow, Russia |
| AuthorAffiliation_xml | – name: 1 Laboratory of Biology of Arboviruses, FSASI Chumakov Federal Scientific Center for Research and Development of Immune-and-Biological Products of RAS, 108819 Moscow, Russia; novosti-wxo@yandex.ru – name: 2 A.N. Severtsov Institute of Ecology and Evolution, 119071 Moscow, Russia; aizueva.ecologist@gmail.com (A.I.Z.); a_tiunov@mail.ru (A.V.T.) – name: 6 Division of Virology, Faculty of Biology, Lomonosov Moscow State University, 119234 Moscow, Russia – name: 4 Division of Entomology, Faculty of Biology, Lomonosov Moscow State University, 119234 Moscow, Russia; natalia.belyaeva45@gmail.com – name: 5 Institute for Translational Medicine and Biotechnology, Sechenov University, 119991 Moscow, Russia – name: 3 Southern Branch, Russian–Vietnamese Tropical Scientific and Technological Center, Ho Chi Minh City 70001, Vietnam; thinh39b@gmail.com |
| Author_xml | – sequence: 1 givenname: Alexander G. surname: Litov fullname: Litov, Alexander G. – sequence: 2 givenname: Anna I. surname: Zueva fullname: Zueva, Anna I. – sequence: 3 givenname: Alexei V. surname: Tiunov fullname: Tiunov, Alexei V. – sequence: 4 givenname: Nguyen surname: Van Thinh fullname: Van Thinh, Nguyen – sequence: 5 givenname: Natalia V. surname: Belyaeva fullname: Belyaeva, Natalia V. – sequence: 6 givenname: Galina G. surname: Karganova fullname: Karganova, Galina G. |
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| Cites_doi | 10.1007/978-981-10-8687-8_25 10.1099/jgv.0.001241 10.1111/j.1365-2311.2011.01265.x 10.3390/v13122375 10.1016/j.biocontrol.2011.06.015 10.1007/s00705-020-04752-x 10.1093/ve/vez021 10.1016/j.sjbs.2021.09.073 10.1080/10635150390235520 10.1038/nature20167 10.1002/ece3.1843 10.1093/molbev/mst010 10.1134/S1062359010040072 10.3390/v12101145 10.3390/v13040588 10.1111/btp.12959 10.1016/j.jtbi.2020.110191 10.1089/cmb.2012.0021 10.1371/journal.ppat.1008224 10.1038/s41598-017-01592-9 10.1093/bioinformatics/btp348 10.7554/eLife.05378 10.1099/jgv.0.001150 10.1016/j.virol.2020.11.008 10.1016/j.cbpa.2011.10.028 10.1134/S1064229316120085 10.1098/rstb.2014.0116 10.3897/zookeys.148.1768 10.1093/bioinformatics/btu170 |
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| Copyright | 2022 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. 2022 by the authors. 2022 |
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| Keywords | virome metagenomics Isoptera social insects tropical forest Deltavirus Chuviridae Dagazvirus |
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| SubjectTerms | Animals Basidiocarps Chuviridae Dagavirus Dagazvirus Deltavirus Ecosystem Forests Genomes Homology Insects Isoptera Laboratories Metagenomics National parks Phylogenetics Phylogeny Proteins RNA polymerase RNA Viruses Termites Tropical forests Vietnam Virome Viruses |
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| Title | Virome of Three Termite Species from Southern Vietnam |
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