Djeen (Database for Joomla!’s Extensible Engine): a research information management system for flexible multi-technology project administration
Background With the advance of post-genomic technologies, the need for tools to manage large scale data in biology becomes more pressing. This involves annotating and storing data securely, as well as granting permissions flexibly with several technologies (all array types, flow cytometry, proteomic...
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| Veröffentlicht in: | BMC research notes Jg. 6; H. 1; S. 223 |
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| Hauptverfasser: | , , , , , , , , |
| Format: | Journal Article |
| Sprache: | Englisch |
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London
BioMed Central
06.06.2013
BioMed Central Ltd Springer Nature B.V |
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| ISSN: | 1756-0500, 1756-0500 |
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| Abstract | Background
With the advance of post-genomic technologies, the need for tools to manage large scale data in biology becomes more pressing. This involves annotating and storing data securely, as well as granting permissions flexibly with several technologies (all array types, flow cytometry, proteomics) for collaborative work and data sharing. This task is not easily achieved with most systems available today.
Findings
We developed Djeen (Database for Joomla!’s Extensible Engine), a new Research Information Management System (RIMS) for collaborative projects. Djeen is a user-friendly application, designed to streamline data storage and annotation collaboratively. Its database model, kept simple, is compliant with most technologies and allows storing and managing of heterogeneous data with the same system. Advanced permissions are managed through different roles. Templates allow Minimum Information (MI) compliance.
Conclusion
Djeen allows managing project associated with heterogeneous data types while enforcing annotation integrity and minimum information. Projects are managed within a hierarchy and user permissions are finely-grained for each project, user and group.
Djeen Component source code (version 1.5.1) and installation documentation are available under CeCILL license from http://sourceforge.net/projects/djeen/files and supplementary material. |
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| AbstractList | BACKGROUND: With the advance of post-genomic technologies, the need for tools to manage large scale data in biology becomes more pressing. This involves annotating and storing data securely, as well as granting permissions flexibly with several technologies (all array types, flow cytometry, proteomics) for collaborative work and data sharing. This task is not easily achieved with most systems available today. FINDINGS: We developed Djeen (Database for Joomla!'s Extensible Engine), a new Research Information Management System (RIMS) for collaborative projects. Djeen is a user-friendly application, designed to streamline data storage and annotation collaboratively. Its database model, kept simple, is compliant with most technologies and allows storing and managing of heterogeneous data with the same system. Advanced permissions are managed through different roles. Templates allow Minimum Information (MI) compliance. CONCLUSION: Djeen allows managing project associated with heterogeneous data types while enforcing annotation integrity and minimum information. Projects are managed within a hierarchy and user permissions are finely-grained for each project, user and group.Djeen Component source code (version 1.5.1) and installation documentation are available under CeCILL license from sourceforge.net/projects/djeen/files and supplementary material. Background With the advance of post-genomic technologies, the need for tools to manage large scale data in biology becomes more pressing. This involves annotating and storing data securely, as well as granting permissions flexibly with several technologies (all array types, flow cytometry, proteomics) for collaborative work and data sharing. This task is not easily achieved with most systems available today. Findings We developed Djeen (Database for Joomla!’s Extensible Engine), a new Research Information Management System (RIMS) for collaborative projects. Djeen is a user-friendly application, designed to streamline data storage and annotation collaboratively. Its database model, kept simple, is compliant with most technologies and allows storing and managing of heterogeneous data with the same system. Advanced permissions are managed through different roles. Templates allow Minimum Information (MI) compliance. Conclusion Djeen allows managing project associated with heterogeneous data types while enforcing annotation integrity and minimum information. Projects are managed within a hierarchy and user permissions are finely-grained for each project, user and group. Djeen Component source code (version 1.5.1) and installation documentation are available under CeCILL license from http://sourceforge.net/projects/djeen/files and supplementary material. Background With the advance of post-genomic technologies, the need for tools to manage large scale data in biology becomes more pressing. This involves annotating and storing data securely, as well as granting permissions flexibly with several technologies (all array types, flow cytometry, proteomics) for collaborative work and data sharing. This task is not easily achieved with most systems available today. Findings We developed Djeen (Database for Joomla!'s Extensible Engine), a new Research Information Management System (RIMS) for collaborative projects. Djeen is a user-friendly application, designed to streamline data storage and annotation collaboratively. Its database model, kept simple, is compliant with most technologies and allows storing and managing of heterogeneous data with the same system. Advanced permissions are managed through different roles. Templates allow Minimum Information (MI) compliance. Conclusion Djeen allows managing project associated with heterogeneous data types while enforcing annotation integrity and minimum information. Projects are managed within a hierarchy and user permissions are finely-grained for each project, user and group. Djeen Component source code (version 1.5.1) and installation documentation are available under CeCILL license from Keywords: Database, CMS, Minimum Information, RIMS With the advance of post-genomic technologies, the need for tools to manage large scale data in biology becomes more pressing. This involves annotating and storing data securely, as well as granting permissions flexibly with several technologies (all array types, flow cytometry, proteomics) for collaborative work and data sharing. This task is not easily achieved with most systems available today.BACKGROUNDWith the advance of post-genomic technologies, the need for tools to manage large scale data in biology becomes more pressing. This involves annotating and storing data securely, as well as granting permissions flexibly with several technologies (all array types, flow cytometry, proteomics) for collaborative work and data sharing. This task is not easily achieved with most systems available today.We developed Djeen (Database for Joomla!'s Extensible Engine), a new Research Information Management System (RIMS) for collaborative projects. Djeen is a user-friendly application, designed to streamline data storage and annotation collaboratively. Its database model, kept simple, is compliant with most technologies and allows storing and managing of heterogeneous data with the same system. Advanced permissions are managed through different roles. Templates allow Minimum Information (MI) compliance.FINDINGSWe developed Djeen (Database for Joomla!'s Extensible Engine), a new Research Information Management System (RIMS) for collaborative projects. Djeen is a user-friendly application, designed to streamline data storage and annotation collaboratively. Its database model, kept simple, is compliant with most technologies and allows storing and managing of heterogeneous data with the same system. Advanced permissions are managed through different roles. Templates allow Minimum Information (MI) compliance.Djeen allows managing project associated with heterogeneous data types while enforcing annotation integrity and minimum information. Projects are managed within a hierarchy and user permissions are finely-grained for each project, user and group.Djeen Component source code (version 1.5.1) and installation documentation are available under CeCILL license from http://sourceforge.net/projects/djeen/files and supplementary material.CONCLUSIONDjeen allows managing project associated with heterogeneous data types while enforcing annotation integrity and minimum information. Projects are managed within a hierarchy and user permissions are finely-grained for each project, user and group.Djeen Component source code (version 1.5.1) and installation documentation are available under CeCILL license from http://sourceforge.net/projects/djeen/files and supplementary material. With the advance of post-genomic technologies, the need for tools to manage large scale data in biology becomes more pressing. This involves annotating and storing data securely, as well as granting permissions flexibly with several technologies (all array types, flow cytometry, proteomics) for collaborative work and data sharing. This task is not easily achieved with most systems available today. We developed Djeen (Database for Joomla!'s Extensible Engine), a new Research Information Management System (RIMS) for collaborative projects. Djeen is a user-friendly application, designed to streamline data storage and annotation collaboratively. Its database model, kept simple, is compliant with most technologies and allows storing and managing of heterogeneous data with the same system. Advanced permissions are managed through different roles. Templates allow Minimum Information (MI) compliance. Djeen allows managing project associated with heterogeneous data types while enforcing annotation integrity and minimum information. Projects are managed within a hierarchy and user permissions are finely-grained for each project, user and group.Djeen Component source code (version 1.5.1) and installation documentation are available under CeCILL license from http://sourceforge.net/projects/djeen/files and supplementary material. With the advance of post-genomic technologies, the need for tools to manage large scale data in biology becomes more pressing. This involves annotating and storing data securely, as well as granting permissions flexibly with several technologies (all array types, flow cytometry, proteomics) for collaborative work and data sharing. This task is not easily achieved with most systems available today. We developed Djeen (Database for Joomla!'s Extensible Engine), a new Research Information Management System (RIMS) for collaborative projects. Djeen is a user-friendly application, designed to streamline data storage and annotation collaboratively. Its database model, kept simple, is compliant with most technologies and allows storing and managing of heterogeneous data with the same system. Advanced permissions are managed through different roles. Templates allow Minimum Information (MI) compliance. Djeen allows managing project associated with heterogeneous data types while enforcing annotation integrity and minimum information. Projects are managed within a hierarchy and user permissions are finely-grained for each project, user and group. Doc number: 223 Abstract Background: With the advance of post-genomic technologies, the need for tools to manage large scale data in biology becomes more pressing. This involves annotating and storing data securely, as well as granting permissions flexibly with several technologies (all array types, flow cytometry, proteomics) for collaborative work and data sharing. This task is not easily achieved with most systems available today. Findings: We developed Djeen (Database for Joomla!'s Extensible Engine), a new Research Information Management System (RIMS) for collaborative projects. Djeen is a user-friendly application, designed to streamline data storage and annotation collaboratively. Its database model, kept simple, is compliant with most technologies and allows storing and managing of heterogeneous data with the same system. Advanced permissions are managed through different roles. Templates allow Minimum Information (MI) compliance. Conclusion: Djeen allows managing project associated with heterogeneous data types while enforcing annotation integrity and minimum information. Projects are managed within a hierarchy and user permissions are finely-grained for each project, user and group. Djeen Component source code (version 1.5.1) and installation documentation are available under CeCILL license from http://sourceforge.net/projects/djeen/files and supplementary material. |
| ArticleNumber | 223 |
| Audience | Academic |
| Author | Finetti, Pascal Blondin, Fanny Vecchio, Alexandre Del Vigy, Oana Guille, Arnaud Duvergey, Hugo Bidaut, Ghislain Granjeaud, Samuel Stahl, Olivier |
| AuthorAffiliation | 1 Aix-Marseille Univ, Marseille, F-13284, France 4 CNRS UMR7258, Centre de Recherche en Cancérologie de Marseille, Marseille, F-13009, France 3 Institut Paoli-Calmettes, Marseille, F-13009, France 5 Plate-forme de Protéomique Fonctionnelle, c/o Institut de Génomique Fonctionnelle, Montpellier, F-34000, France 6 CNRS, UMR-5203, Institut de Génomique Fonctionnelle, Montpellier, F-34094, France 8 Universités de Montpellier 1 & 2, UMR-5203, Montpellier, F-34094, France 2 Inserm U1068, Centre de Recherche en Cancérologie de Marseille, Marseille F-13009, France 7 INSERM, U661, Montpellier, F-34094, France |
| AuthorAffiliation_xml | – name: 4 CNRS UMR7258, Centre de Recherche en Cancérologie de Marseille, Marseille, F-13009, France – name: 8 Universités de Montpellier 1 & 2, UMR-5203, Montpellier, F-34094, France – name: 7 INSERM, U661, Montpellier, F-34094, France – name: 2 Inserm U1068, Centre de Recherche en Cancérologie de Marseille, Marseille F-13009, France – name: 5 Plate-forme de Protéomique Fonctionnelle, c/o Institut de Génomique Fonctionnelle, Montpellier, F-34000, France – name: 6 CNRS, UMR-5203, Institut de Génomique Fonctionnelle, Montpellier, F-34094, France – name: 3 Institut Paoli-Calmettes, Marseille, F-13009, France – name: 1 Aix-Marseille Univ, Marseille, F-13284, France |
| Author_xml | – sequence: 1 givenname: Olivier surname: Stahl fullname: Stahl, Olivier organization: Aix-Marseille Univ, Marseille, Inserm U1068, Centre de Recherche en Cancérologie de Marseille, Institut Paoli-Calmettes, CNRS UMR7258, Centre de Recherche en Cancérologie de Marseille – sequence: 2 givenname: Hugo surname: Duvergey fullname: Duvergey, Hugo organization: Plate-forme de Protéomique Fonctionnelle, c/o Institut de Génomique Fonctionnelle, CNRS, UMR-5203, Institut de Génomique Fonctionnelle, INSERM, U661, Universités de Montpellier 1 & 2, UMR-5203 – sequence: 3 givenname: Arnaud surname: Guille fullname: Guille, Arnaud organization: Aix-Marseille Univ, Marseille, Inserm U1068, Centre de Recherche en Cancérologie de Marseille, Institut Paoli-Calmettes, CNRS UMR7258, Centre de Recherche en Cancérologie de Marseille – sequence: 4 givenname: Fanny surname: Blondin fullname: Blondin, Fanny organization: Aix-Marseille Univ, Marseille, Inserm U1068, Centre de Recherche en Cancérologie de Marseille, Institut Paoli-Calmettes, CNRS UMR7258, Centre de Recherche en Cancérologie de Marseille – sequence: 5 givenname: Alexandre Del surname: Vecchio fullname: Vecchio, Alexandre Del organization: Aix-Marseille Univ, Marseille, Inserm U1068, Centre de Recherche en Cancérologie de Marseille, Institut Paoli-Calmettes, CNRS UMR7258, Centre de Recherche en Cancérologie de Marseille – sequence: 6 givenname: Pascal surname: Finetti fullname: Finetti, Pascal organization: Aix-Marseille Univ, Marseille, Inserm U1068, Centre de Recherche en Cancérologie de Marseille, Institut Paoli-Calmettes, CNRS UMR7258, Centre de Recherche en Cancérologie de Marseille – sequence: 7 givenname: Samuel surname: Granjeaud fullname: Granjeaud, Samuel organization: Aix-Marseille Univ, Marseille, Inserm U1068, Centre de Recherche en Cancérologie de Marseille, Institut Paoli-Calmettes, CNRS UMR7258, Centre de Recherche en Cancérologie de Marseille – sequence: 8 givenname: Oana surname: Vigy fullname: Vigy, Oana organization: Plate-forme de Protéomique Fonctionnelle, c/o Institut de Génomique Fonctionnelle, CNRS, UMR-5203, Institut de Génomique Fonctionnelle, INSERM, U661, Universités de Montpellier 1 & 2, UMR-5203 – sequence: 9 givenname: Ghislain surname: Bidaut fullname: Bidaut, Ghislain email: ghislain.bidaut@inserm.fr organization: Aix-Marseille Univ, Marseille, Inserm U1068, Centre de Recherche en Cancérologie de Marseille, Institut Paoli-Calmettes, CNRS UMR7258, Centre de Recherche en Cancérologie de Marseille |
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| Cites_doi | 10.1002/cyto.a.20623 10.1038/nbt0808-862 10.1186/1471-2164-11-S5-S8 10.3109/14653249.2011.619007 10.1093/bib/bbm057 10.1038/ng1201-365 10.1002/pmic.200900409 10.2174/138620711796957116 10.1186/1471-2105-10-330 10.1158/1078-0432.CCR-07-4756 10.1016/j.ijinfomgt.2009.09.005 10.1186/1751-0473-6-9 |
| ContentType | Journal Article |
| Copyright | Stahl et al.; licensee BioMed Central Ltd. 2013 This article is published under license to BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License ( ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. COPYRIGHT 2013 BioMed Central Ltd. 2013 Stahl et al.; licensee BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. Distributed under a Creative Commons Attribution 4.0 International License Copyright © 2013 Stahl et al.; licensee BioMed Central Ltd. 2013 Stahl et al.; licensee BioMed Central Ltd. |
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With the advance of post-genomic technologies, the need for tools to manage large scale data in biology becomes more pressing. This involves... With the advance of post-genomic technologies, the need for tools to manage large scale data in biology becomes more pressing. This involves annotating and... Background With the advance of post-genomic technologies, the need for tools to manage large scale data in biology becomes more pressing. This involves... Doc number: 223 Abstract Background: With the advance of post-genomic technologies, the need for tools to manage large scale data in biology becomes more... BACKGROUND: With the advance of post-genomic technologies, the need for tools to manage large scale data in biology becomes more pressing. This involves... |
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