Variations on RNA folding and alignment: lessons from Benasque

Dynamic programming algorithms solve many standard problems of RNA bioinformatics in polynomial time. In this contribution we discuss a series of variations on these standard methods that implement refined biophysical models, such as a restriction of RNA folding to canonical structures, and an exten...

Full description

Saved in:

Bibliographic Details
Published in:	Journal of mathematical biology Vol. 56; no. 1-2; pp. 129 - 144
Main Authors:	Bompfünewerer, Athanasius F., Backofen, Rolf, Bernhart, Stephan H., Hertel, Jana, Hofacker, Ivo L., Stadler, Peter F., Will, Sebastian
Format:	Journal Article
Language:	English
Published:	Berlin/Heidelberg Springer-Verlag 01.01.2008 Springer Nature B.V
Subjects:	Algorithms Applications of Mathematics Computational Biology - methods Mathematical and Computational Biology Mathematics Mathematics and Statistics Nucleic Acid Conformation RNA, Untranslated - chemistry RNA, Untranslated - genetics Sequence Alignment RNA folding Secondary structure alignment 90C90 Dynamic programming 90C27 92C40
ISSN:	0303-6812, 1432-1416
Online Access:	Get full text
Tags:	Add Tag No Tags, Be the first to tag this record!

Be the first to leave a comment!