Grapevine leafroll-associated virus 3
Grapevine leafroll disease (GLD) is one of the most important grapevine viral diseases affecting grapevines worldwide. The impact on vine health, crop yield, and quality is difficult to assess due to a high number of variables, but significant economic losses are consistently reported over the lifes...
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| Veröffentlicht in: | Frontiers in microbiology Jg. 4; S. 82 |
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| Format: | Journal Article |
| Sprache: | Englisch |
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Frontiers Media S.A
2013
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| ISSN: | 1664-302X, 1664-302X |
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| Abstract | Grapevine leafroll disease (GLD) is one of the most important grapevine viral diseases affecting grapevines worldwide. The impact on vine health, crop yield, and quality is difficult to assess due to a high number of variables, but significant economic losses are consistently reported over the lifespan of a vineyard if intervention strategies are not implemented. Several viruses from the family Closteroviridae are associated with GLD. However, Grapevine leafroll-associated virus 3 (GLRaV-3), the type species for the genus Ampelovirus, is regarded as the most important causative agent. Here we provide a general overview on various aspects of GLRaV-3, with an emphasis on the latest advances in the characterization of the genome. The full genome of several isolates have recently been sequenced and annotated, revealing the existence of several genetic variants. The classification of these variants, based on their genome sequence, will be discussed and a guideline is presented to facilitate future comparative studies. The characterization of sgRNAs produced during the infection cycle of GLRaV-3 has given some insight into the replication strategy and the putative functionality of the ORFs. The latest nucleotide sequence based molecular diagnostic techniques were shown to be more sensitive than conventional serological assays and although ELISA is not as sensitive it remains valuable for high-throughput screening and complementary to molecular diagnostics. The application of next-generation sequencing is proving to be a valuable tool to study the complexity of viral infection as well as plant pathogen interaction. Next-generation sequencing data can provide information regarding disease complexes, variants of viral species, and abundance of particular viruses. This information can be used to develop more accurate diagnostic assays. Reliable virus screening in support of robust grapevine certification programs remains the cornerstone of GLD management. |
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| AbstractList | Grapevine leafroll disease (GLD) is one of the most important grapevine viral diseases affecting grapevines worldwide. The impact on vine health, crop yield, and quality is difficult to assess due to a high number of variables, but significant economic losses are consistently reported over the lifespan of a vineyard if intervention strategies are not implemented. Several viruses from the family Closteroviridae are associated with GLD. However, Grapevine leafroll-associated virus 3 (GLRaV-3), the type species for the genus Ampelovirus, is regarded as the most important causative agent. Here we provide a general overview on various aspects of GLRaV-3, with an emphasis on the latest advances in the characterization of the genome. The full genome of several isolates have recently been sequenced and annotated, revealing the existence of several genetic variants. The classification of these variants, based on their genome sequence, will be discussed and a guideline is presented to facilitate future comparative studies. The characterization of sgRNAs produced during the infection cycle of GLRaV-3 has given some insight into the replication strategy and the putative functionality of the ORFs. The latest nucleotide sequence based molecular diagnostic techniques were shown to be more sensitive than conventional serological assays and although ELISA is not as sensitive it remains valuable for high-throughput screening and complementary to molecular diagnostics. The application of next-generation sequencing is proving to be a valuable tool to study the complexity of viral infection as well as plant pathogen interaction. Next-generation sequencing data can provide information regarding disease complexes, variants of viral species, and abundance of particular viruses. This information can be used to develop more accurate diagnostic assays. Reliable virus screening in support of robust grapevine certification programs remains the cornerstone of GLD management. Grapevine leafroll disease (GLD) is one of the most important grapevine viral diseases affecting grapevines worldwide. The impact on vine health, crop yield, and quality is difficult to assess due to a high number of variables, but significant economic losses are consistently reported over the lifespan of a vineyard if intervention strategies are not implemented. Several viruses from the family Closteroviridae are associated with GLD. However, Grapevine leafroll-associated virus 3 (GLRaV-3), the type species for the genus Ampelovirus, is regarded as the most important causative agent. Here we provide a general overview on various aspects of GLRaV-3, with an emphasis on the latest advances in the characterization of the genome. The full genome of several isolates have recently been sequenced and annotated, revealing the existence of several genetic variants. The classification of these variants, based on their genome sequence, will be discussed and a guideline is presented to facilitate future comparative studies. The characterization of sgRNAs produced during the infection cycle of GLRaV-3 has given some insight into the replication strategy and the putative functionality of the ORFs. The latest nucleotide sequence based molecular diagnostic techniques were shown to be more sensitive than conventional serological assays and although ELISA is not as sensitive it remains valuable for high-throughput screening and complementary to molecular diagnostics. The application of next-generation sequencing is proving to be a valuable tool to study the complexity of viral infection as well as plant pathogen interaction. Next-generation sequencing data can provide information regarding disease complexes, variants of viral species, and abundance of particular viruses. This information can be used to develop more accurate diagnostic assays. Reliable virus screening in support of robust grapevine certification programs remains the cornerstone of GLD management.Grapevine leafroll disease (GLD) is one of the most important grapevine viral diseases affecting grapevines worldwide. The impact on vine health, crop yield, and quality is difficult to assess due to a high number of variables, but significant economic losses are consistently reported over the lifespan of a vineyard if intervention strategies are not implemented. Several viruses from the family Closteroviridae are associated with GLD. However, Grapevine leafroll-associated virus 3 (GLRaV-3), the type species for the genus Ampelovirus, is regarded as the most important causative agent. Here we provide a general overview on various aspects of GLRaV-3, with an emphasis on the latest advances in the characterization of the genome. The full genome of several isolates have recently been sequenced and annotated, revealing the existence of several genetic variants. The classification of these variants, based on their genome sequence, will be discussed and a guideline is presented to facilitate future comparative studies. The characterization of sgRNAs produced during the infection cycle of GLRaV-3 has given some insight into the replication strategy and the putative functionality of the ORFs. The latest nucleotide sequence based molecular diagnostic techniques were shown to be more sensitive than conventional serological assays and although ELISA is not as sensitive it remains valuable for high-throughput screening and complementary to molecular diagnostics. The application of next-generation sequencing is proving to be a valuable tool to study the complexity of viral infection as well as plant pathogen interaction. Next-generation sequencing data can provide information regarding disease complexes, variants of viral species, and abundance of particular viruses. This information can be used to develop more accurate diagnostic assays. Reliable virus screening in support of robust grapevine certification programs remains the cornerstone of GLD management. |
| Author | Saldarelli, Pasquale Bester, Rachelle Chooi, Kar Mun Golino, Deborah A. Rowhani, Adib Maree, Hans J. Jooste, Anna E. C. Dolja, Valerian V. Martelli, Giovanni P. Almeida, Rodrigo P. P. Cohen, Daniel Fuchs, Marc F. Burger, Johan T. Naidu, Rayapati A. |
| AuthorAffiliation | 8 Department of Plant Pathology, University of California Davis, CA, USA 11 Department of Plant Pathology, Irrigated Agriculture Research and Extension Center, Washington State University Prosser, WA, USA 7 Department of Plant Pathology and Plant-Microbe Biology, Cornell University Geneva, NY, USA 4 School of Biological Sciences, University of Auckland Auckland, New Zealand 9 Plant Protection Research Institute, Agricultural Research Council Pretoria, South Africa 10 Department of Soil, Plant and Food Sciences, University Aldo Moro of Bari Bari, Italy 12 Institute of Plant Virology, National Research Council Bari, Italy 6 Department of Botany and Plant Pathology, Oregon State University Corvallis, OR, USA 1 Department of Genetics, Stellenbosch University Stellenbosch, South Africa 2 Biotechnology Platform, Agricultural Research Council Stellenbosch, South Africa 5 The New Zealand Institute for Plant and Food Research Auckland, New Zealand 3 Department of Environmental Science, Policy and Manageme |
| AuthorAffiliation_xml | – name: 1 Department of Genetics, Stellenbosch University Stellenbosch, South Africa – name: 2 Biotechnology Platform, Agricultural Research Council Stellenbosch, South Africa – name: 12 Institute of Plant Virology, National Research Council Bari, Italy – name: 5 The New Zealand Institute for Plant and Food Research Auckland, New Zealand – name: 6 Department of Botany and Plant Pathology, Oregon State University Corvallis, OR, USA – name: 8 Department of Plant Pathology, University of California Davis, CA, USA – name: 9 Plant Protection Research Institute, Agricultural Research Council Pretoria, South Africa – name: 3 Department of Environmental Science, Policy and Management, University of California Berkeley, CA, USA – name: 11 Department of Plant Pathology, Irrigated Agriculture Research and Extension Center, Washington State University Prosser, WA, USA – name: 10 Department of Soil, Plant and Food Sciences, University Aldo Moro of Bari Bari, Italy – name: 7 Department of Plant Pathology and Plant-Microbe Biology, Cornell University Geneva, NY, USA – name: 4 School of Biological Sciences, University of Auckland Auckland, New Zealand |
| Author_xml | – sequence: 1 givenname: Hans J. surname: Maree fullname: Maree, Hans J. – sequence: 2 givenname: Rodrigo P. P. surname: Almeida fullname: Almeida, Rodrigo P. P. – sequence: 3 givenname: Rachelle surname: Bester fullname: Bester, Rachelle – sequence: 4 givenname: Kar Mun surname: Chooi fullname: Chooi, Kar Mun – sequence: 5 givenname: Daniel surname: Cohen fullname: Cohen, Daniel – sequence: 6 givenname: Valerian V. surname: Dolja fullname: Dolja, Valerian V. – sequence: 7 givenname: Marc F. surname: Fuchs fullname: Fuchs, Marc F. – sequence: 8 givenname: Deborah A. surname: Golino fullname: Golino, Deborah A. – sequence: 9 givenname: Anna E. C. surname: Jooste fullname: Jooste, Anna E. C. – sequence: 10 givenname: Giovanni P. surname: Martelli fullname: Martelli, Giovanni P. – sequence: 11 givenname: Rayapati A. surname: Naidu fullname: Naidu, Rayapati A. – sequence: 12 givenname: Adib surname: Rowhani fullname: Rowhani, Adib – sequence: 13 givenname: Pasquale surname: Saldarelli fullname: Saldarelli, Pasquale – sequence: 14 givenname: Johan T. surname: Burger fullname: Burger, Johan T. |
| BackLink | https://www.ncbi.nlm.nih.gov/pubmed/23596440$$D View this record in MEDLINE/PubMed |
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| Copyright | Copyright © 2013 Maree, Almeida, Bester, Chooi, Cohen, Dolja, Fuchs, Golino, Jooste, Martelli, Naidu, Rowhani, Saldarelli and Burger. 2013 |
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| Keywords | genetic variants GLRaV-3 grapevine leafroll disease Closteroviridae ampelovirus |
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| Snippet | Grapevine leafroll disease (GLD) is one of the most important grapevine viral diseases affecting grapevines worldwide. The impact on vine health, crop yield,... Grapevine leafroll disease (GLD) is one of the most important grapevine viral diseases affecting grapevines worldwide. The impact on vine health, crop yield... |
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| SubjectTerms | ampelovirus Closteroviridae genetic variants GLRaV-3 Grapevine leafroll disease Microbiology |
| Title | Grapevine leafroll-associated virus 3 |
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