Unique genomic organization of a novel Avipoxvirus detected in turkey (Meleagris gallopavo)

•The whole genome sequence of a novel avipoxvirus that emerged in Hungary during 2011 in turkey flocks is described in this study.•The genome size measured approx. 188.5kbp.•Phylogenetic analysis of the 4b and DNA polymerase genes classified this strain into a novel genetic clade. Avipoxviruses are...

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Vydáno v:	Infection, genetics and evolution Ročník 35; s. 221 - 229
Hlavní autoři:	Bányai, Krisztián, Palya, Vilmos, Dénes, Béla, Glávits, Róbert, Ivanics, Éva, Horváth, Balázs, Farkas, Szilvia L., Marton, Szilvia, Bálint, Ádám, Gyuranecz, Miklós, Erdélyi, Károly, Dán, Ádám
Médium:	Journal Article
Jazyk:	angličtina
Vydáno:	Netherlands Elsevier B.V 01.10.2015
Témata:	Animals Avipoxvirus Avipoxvirus - classification Avipoxvirus - genetics Avipoxvirus - isolation & purification DNA-directed DNA polymerase Female flocks genes Genome Size Genome, Viral genomics Hungary Male Meleagris gallopavo nucleotide sequences pathogens Phylogenetic analysis Phylogeny Poultry Poultry Diseases - pathology Poultry Diseases - virology Poxviridae Poxviridae Infections - pathology Poxviridae Infections - veterinary Poxviridae Infections - virology proteins Semiconductor sequencing Sequence Analysis, DNA - methods Skin - pathology Skin - virology skin lesions strain differences Turkeys vaccines viruses Whole genome sequencing Hungary Phylogenetic analysis Semiconductor sequencing Hungary Poultry Poxviridae Whole genome sequencing
ISSN:	1567-1348, 1567-7257, 1567-7257
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Abstract	•The whole genome sequence of a novel avipoxvirus that emerged in Hungary during 2011 in turkey flocks is described in this study.•The genome size measured approx. 188.5kbp.•Phylogenetic analysis of the 4b and DNA polymerase genes classified this strain into a novel genetic clade. Avipoxviruses are emerging pathogens affecting over 200 bird species worldwide. Genetic characterization of avipoxviruses is performed by analysis of genomic regions encoding the 4b and DNA polymerase. Whole genome sequence data are limited to a few avipoxvirus isolates. Based on phylogenetic analysis three major genetic clades are distinguished. In this study we report a novel avipoxvirus strain causing skin lesions in domestic turkey. The virus was identified in Hungary during 2011 in a flock of turkey vaccinated against avipoxvirus infection. The genome of the isolated strain, TKPV-HU1124/2011, was uniquely short (∼188.5kbp) and was predicted to encode reduced number of proteins. Phylogenetic analysis of the genes encoding the 4b and DNA polymerase separated TKPV-HU1124/2011 from other turkey origin avipoxviruses and classified it into a new genetic clade. This study permits new insight into the genetic and genomic heterogeneity of avipoxviruses and pinpoints the importance of strain diversity in vaccine efficacy.
AbstractList	Avipoxviruses are emerging pathogens affecting over 200 bird species worldwide. Genetic characterization of avipoxviruses is performed by analysis of genomic regions encoding the 4b and DNA polymerase. Whole genome sequence data are limited to a few avipoxvirus isolates. Based on phylogenetic analysis three major genetic clades are distinguished. In this study we report a novel avipoxvirus strain causing skin lesions in domestic turkey. The virus was identified in Hungary during 2011 in a flock of turkey vaccinated against avipoxvirus infection. The genome of the isolated strain, TKPV-HU1124/2011, was uniquely short (∼188.5kbp) and was predicted to encode reduced number of proteins. Phylogenetic analysis of the genes encoding the 4b and DNA polymerase separated TKPV-HU1124/2011 from other turkey origin avipoxviruses and classified it into a new genetic clade. This study permits new insight into the genetic and genomic heterogeneity of avipoxviruses and pinpoints the importance of strain diversity in vaccine efficacy. Avipoxviruses are emerging pathogens affecting over 200 bird species worldwide. Genetic characterization of avipoxviruses is performed by analysis of genomic regions encoding the 4b and DNA polymerase. Whole genome sequence data are limited to a few avipoxvirus isolates. Based on phylogenetic analysis three major genetic clades are distinguished. In this study we report a novel avipoxvirus strain causing skin lesions in domestic turkey. The virus was identified in Hungary during 2011 in a flock of turkey vaccinated against avipoxvirus infection. The genome of the isolated strain, TKPV-HU1124/2011, was uniquely short (∼188.5kbp) and was predicted to encode reduced number of proteins. Phylogenetic analysis of the genes encoding the 4b and DNA polymerase separated TKPV-HU1124/2011 from other turkey origin avipoxviruses and classified it into a new genetic clade. This study permits new insight into the genetic and genomic heterogeneity of avipoxviruses and pinpoints the importance of strain diversity in vaccine efficacy.Avipoxviruses are emerging pathogens affecting over 200 bird species worldwide. Genetic characterization of avipoxviruses is performed by analysis of genomic regions encoding the 4b and DNA polymerase. Whole genome sequence data are limited to a few avipoxvirus isolates. Based on phylogenetic analysis three major genetic clades are distinguished. In this study we report a novel avipoxvirus strain causing skin lesions in domestic turkey. The virus was identified in Hungary during 2011 in a flock of turkey vaccinated against avipoxvirus infection. The genome of the isolated strain, TKPV-HU1124/2011, was uniquely short (∼188.5kbp) and was predicted to encode reduced number of proteins. Phylogenetic analysis of the genes encoding the 4b and DNA polymerase separated TKPV-HU1124/2011 from other turkey origin avipoxviruses and classified it into a new genetic clade. This study permits new insight into the genetic and genomic heterogeneity of avipoxviruses and pinpoints the importance of strain diversity in vaccine efficacy. •The whole genome sequence of a novel avipoxvirus that emerged in Hungary during 2011 in turkey flocks is described in this study.•The genome size measured approx. 188.5kbp.•Phylogenetic analysis of the 4b and DNA polymerase genes classified this strain into a novel genetic clade. Avipoxviruses are emerging pathogens affecting over 200 bird species worldwide. Genetic characterization of avipoxviruses is performed by analysis of genomic regions encoding the 4b and DNA polymerase. Whole genome sequence data are limited to a few avipoxvirus isolates. Based on phylogenetic analysis three major genetic clades are distinguished. In this study we report a novel avipoxvirus strain causing skin lesions in domestic turkey. The virus was identified in Hungary during 2011 in a flock of turkey vaccinated against avipoxvirus infection. The genome of the isolated strain, TKPV-HU1124/2011, was uniquely short (∼188.5kbp) and was predicted to encode reduced number of proteins. Phylogenetic analysis of the genes encoding the 4b and DNA polymerase separated TKPV-HU1124/2011 from other turkey origin avipoxviruses and classified it into a new genetic clade. This study permits new insight into the genetic and genomic heterogeneity of avipoxviruses and pinpoints the importance of strain diversity in vaccine efficacy.
Author	Farkas, Szilvia L. Dán, Ádám Bányai, Krisztián Marton, Szilvia Bálint, Ádám Glávits, Róbert Palya, Vilmos Erdélyi, Károly Dénes, Béla Ivanics, Éva Horváth, Balázs Gyuranecz, Miklós
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Cites_doi	10.1080/030794500750047207 10.1186/1743-422X-8-49 10.1637/9771-050511-Case.1 10.1016/S0166-0934(96)02119-2 10.1016/j.vetmic.2006.03.012 10.1016/0042-6822(90)90285-Y 10.1016/S0022-2836(05)80360-2 10.1186/1471-2164-9-75 10.1016/0168-1702(88)90058-5 10.1128/JVI.78.1.353-366.2004 10.7589/0090-3558-36.2.225 10.1093/bioinformatics/btn575 10.1080/03079459994434 10.1556/AVet.56.2008.4.11 10.1007/BF01311040 10.1099/vir.0.81738-0 10.1186/1471-2164-15-463 10.1093/bioinformatics/btg180 10.1128/JVI.03183-12 10.7589/0090-3558-16.4.623 10.1637/7111 10.1016/j.vetmic.2009.07.004 10.1093/nar/29.12.2607 10.1007/s11262-012-0821-y 10.2307/1590119 10.1186/BF03547423 10.1080/03079457.2013.843159 10.1099/vir.0.19568-0 10.1128/JVI.74.8.3815-3831.2000 10.3201/eid2104.141370 10.2307/1592757
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Snippet	•The whole genome sequence of a novel avipoxvirus that emerged in Hungary during 2011 in turkey flocks is described in this study.•The genome size measured... Avipoxviruses are emerging pathogens affecting over 200 bird species worldwide. Genetic characterization of avipoxviruses is performed by analysis of genomic...
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SubjectTerms	Animals Avipoxvirus Avipoxvirus - classification Avipoxvirus - genetics Avipoxvirus - isolation & purification DNA-directed DNA polymerase Female flocks genes Genome Size Genome, Viral genomics Hungary Male Meleagris gallopavo nucleotide sequences pathogens Phylogenetic analysis Phylogeny Poultry Poultry Diseases - pathology Poultry Diseases - virology Poxviridae Poxviridae Infections - pathology Poxviridae Infections - veterinary Poxviridae Infections - virology proteins Semiconductor sequencing Sequence Analysis, DNA - methods Skin - pathology Skin - virology skin lesions strain differences Turkeys vaccines viruses Whole genome sequencing
Title	Unique genomic organization of a novel Avipoxvirus detected in turkey (Meleagris gallopavo)
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