Single pass streaming BLAST on FPGAs

Approximate string matching is fundamental to bioinformatics and has been the subject of numerous FPGA acceleration studies. We address issues with respect to FPGA implementations of both BLAST- and dynamic-programming- (DP) based methods. Our primary contribution is a new algorithm for emulating th...

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Veröffentlicht in:	Parallel computing Jg. 33; H. 10; S. 741 - 756
Hauptverfasser:	Herbordt, Martin C., Model, Josh, Sukhwani, Bharat, Gu, Yongfeng, VanCourt, Tom
Format:	Journal Article
Sprache:	Englisch
Veröffentlicht:	Netherlands Elsevier B.V 01.11.2007
Schlagworte:	Bioinformatics Computational accelerators Configurable computing High performance computing Configurable computing High performance computing Computational accelerators Bioinformatics
ISSN:	0167-8191, 1872-7336
Online-Zugang:	Volltext
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