Single pass streaming BLAST on FPGAs

Approximate string matching is fundamental to bioinformatics and has been the subject of numerous FPGA acceleration studies. We address issues with respect to FPGA implementations of both BLAST- and dynamic-programming- (DP) based methods. Our primary contribution is a new algorithm for emulating th...

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Bibliographic Details

Published in:	Parallel computing Vol. 33; no. 10; pp. 741 - 756
Main Authors:	Herbordt, Martin C., Model, Josh, Sukhwani, Bharat, Gu, Yongfeng, VanCourt, Tom
Format:	Journal Article
Language:	English
Published:	Netherlands Elsevier B.V 01.11.2007
Subjects:	Bioinformatics Computational accelerators Configurable computing High performance computing Configurable computing High performance computing Computational accelerators Bioinformatics
ISSN:	0167-8191, 1872-7336
Online Access:	Get full text
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