TrackMate 7: integrating state-of-the-art segmentation algorithms into tracking pipelines
TrackMate is an automated tracking software used to analyze bioimages and is distributed as a Fiji plugin. Here, we introduce a new version of TrackMate. TrackMate 7 is built to address the broad spectrum of modern challenges researchers face by integrating state-of-the-art segmentation algorithms i...
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| Vydáno v: | Nature methods Ročník 19; číslo 7; s. 829 - 832 |
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| Hlavní autoři: | , , , , , , , , , , , , |
| Médium: | Journal Article |
| Jazyk: | angličtina |
| Vydáno: |
New York
Nature Publishing Group US
01.07.2022
Nature Publishing Group |
| Témata: | |
| ISSN: | 1548-7091, 1548-7105, 1548-7105 |
| On-line přístup: | Získat plný text |
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| Abstract | TrackMate is an automated tracking software used to analyze bioimages and is distributed as a Fiji plugin. Here, we introduce a new version of TrackMate. TrackMate 7 is built to address the broad spectrum of modern challenges researchers face by integrating state-of-the-art segmentation algorithms into tracking pipelines. We illustrate qualitatively and quantitatively that these new capabilities function effectively across a wide range of bio-imaging experiments.
TrackMate 7 combines the benefits of machine and deep learning-based image segmentation with accurate object tracking to enable improved 2D and 3D tracking of diverse objects in biological research. |
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| AbstractList | TrackMate is an automated tracking software used to analyze bioimages and is distributed as a Fiji plugin. Here, we introduce a new version of TrackMate. TrackMate 7 is built to address the broad spectrum of modern challenges researchers face by integrating state-of-the-art segmentation algorithms into tracking pipelines. We illustrate qualitatively and quantitatively that these new capabilities function effectively across a wide range of bio-imaging experiments.
TrackMate 7 combines the benefits of machine and deep learning-based image segmentation with accurate object tracking to enable improved 2D and 3D tracking of diverse objects in biological research. TrackMate is an automated tracking software used to analyze bioimages and is distributed as a Fiji plugin. Here, we introduce a new version of TrackMate. TrackMate 7 is built to address the broad spectrum of modern challenges researchers face by integrating state-of-the-art segmentation algorithms into tracking pipelines. We illustrate qualitatively and quantitatively that these new capabilities function effectively across a wide range of bio-imaging experiments.TrackMate is an automated tracking software used to analyze bioimages and is distributed as a Fiji plugin. Here, we introduce a new version of TrackMate. TrackMate 7 is built to address the broad spectrum of modern challenges researchers face by integrating state-of-the-art segmentation algorithms into tracking pipelines. We illustrate qualitatively and quantitatively that these new capabilities function effectively across a wide range of bio-imaging experiments. TrackMate is an automated tracking software used to analyze bioimages and is distributed as a Fiji plugin. Here, we introduce a new version of TrackMate. TrackMate 7 is built to address the broad spectrum of modern challenges researchers face by integrating state-of-the-art segmentation algorithms into tracking pipelines. We illustrate qualitatively and quantitatively that these new capabilities function effectively across a wide range of bio-imaging experiments.TrackMate 7 combines the benefits of machine and deep learning-based image segmentation with accurate object tracking to enable improved 2D and 3D tracking of diverse objects in biological research. TrackMate is an automated tracking software used to analyze bioimages and is distributed as a Fiji plugin. Here, we introduce a new version of TrackMate. TrackMate 7 is built to address the broad spectrum of modern challenges researchers face by integrating state-of-the-art segmentation algorithms into tracking pipelines. We illustrate qualitatively and quantitatively that these new capabilities function effectively across a wide range of bio-imaging experiments. |
| Author | Conway, James R. W. Rigaud, Stéphane U. Duménil, Guillaume Phan, Minh-Son Roy, Nathan H. Laine, Romain F. Tinevez, Jean-Yves Pylvänäinen, Joanna W. Ershov, Dmitry Le Blanc, Laure Bonazzi, Daria Jacquemet, Guillaume Charles-Orszag, Arthur |
| Author_xml | – sequence: 1 givenname: Dmitry surname: Ershov fullname: Ershov, Dmitry organization: Institut Pasteur, Université de Paris Cité, Image Analysis Hub, Institut Pasteur, Université de Paris Cité, Biostatistics and Bioinformatic Hub – sequence: 2 givenname: Minh-Son surname: Phan fullname: Phan, Minh-Son organization: Institut Pasteur, Université de Paris Cité, Image Analysis Hub – sequence: 3 givenname: Joanna W. orcidid: 0000-0002-3540-5150 surname: Pylvänäinen fullname: Pylvänäinen, Joanna W. organization: Turku Bioscience Centre, University of Turku and Åbo Akademi University, Åbo Akademi University, Faculty of Science and Engineering, Biosciences, Turku Bioimaging, University of Turku and Åbo Akademi University – sequence: 4 givenname: Stéphane U. surname: Rigaud fullname: Rigaud, Stéphane U. organization: Institut Pasteur, Université de Paris Cité, Image Analysis Hub – sequence: 5 givenname: Laure orcidid: 0000-0003-3725-5480 surname: Le Blanc fullname: Le Blanc, Laure organization: Institut Pasteur, Université Paris Cité, INSERM UMR1225, Pathogenesis of Vascular Infections unit – sequence: 6 givenname: Arthur surname: Charles-Orszag fullname: Charles-Orszag, Arthur organization: Institut Pasteur, Université Paris Cité, INSERM UMR1225, Pathogenesis of Vascular Infections unit – sequence: 7 givenname: James R. W. orcidid: 0000-0003-3787-277X surname: Conway fullname: Conway, James R. W. organization: Turku Bioscience Centre, University of Turku and Åbo Akademi University – sequence: 8 givenname: Romain F. surname: Laine fullname: Laine, Romain F. organization: MRC Laboratory for Molecular Cell Biology, University College London, The Francis Crick Institute, Micrographia Bio, Translation and Innovation Hub – sequence: 9 givenname: Nathan H. surname: Roy fullname: Roy, Nathan H. organization: Department of Microbiology and Immunology, SUNY Upstate Medical University – sequence: 10 givenname: Daria surname: Bonazzi fullname: Bonazzi, Daria organization: Institut Pasteur, Université Paris Cité, INSERM UMR1225, Pathogenesis of Vascular Infections unit – sequence: 11 givenname: Guillaume surname: Duménil fullname: Duménil, Guillaume organization: Institut Pasteur, Université Paris Cité, INSERM UMR1225, Pathogenesis of Vascular Infections unit – sequence: 12 givenname: Guillaume orcidid: 0000-0002-9286-920X surname: Jacquemet fullname: Jacquemet, Guillaume email: guillaume.jacquemet@abo.fi organization: Turku Bioscience Centre, University of Turku and Åbo Akademi University, Åbo Akademi University, Faculty of Science and Engineering, Biosciences, Turku Bioimaging, University of Turku and Åbo Akademi University – sequence: 13 givenname: Jean-Yves orcidid: 0000-0002-0998-4718 surname: Tinevez fullname: Tinevez, Jean-Yves email: jean-yves.tinevez@pasteur.fr organization: Institut Pasteur, Université de Paris Cité, Image Analysis Hub |
| BackLink | https://www.ncbi.nlm.nih.gov/pubmed/35654950$$D View this record in MEDLINE/PubMed https://pasteur.hal.science/pasteur-03691516$$DView record in HAL |
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| Title | TrackMate 7: integrating state-of-the-art segmentation algorithms into tracking pipelines |
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