TrackMate 7: integrating state-of-the-art segmentation algorithms into tracking pipelines

TrackMate is an automated tracking software used to analyze bioimages and is distributed as a Fiji plugin. Here, we introduce a new version of TrackMate. TrackMate 7 is built to address the broad spectrum of modern challenges researchers face by integrating state-of-the-art segmentation algorithms i...

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Bibliographic Details
Published in:Nature methods Vol. 19; no. 7; pp. 829 - 832
Main Authors: Ershov, Dmitry, Phan, Minh-Son, Pylvänäinen, Joanna W., Rigaud, Stéphane U., Le Blanc, Laure, Charles-Orszag, Arthur, Conway, James R. W., Laine, Romain F., Roy, Nathan H., Bonazzi, Daria, Duménil, Guillaume, Jacquemet, Guillaume, Tinevez, Jean-Yves
Format: Journal Article
Language:English
Published: New York Nature Publishing Group US 01.07.2022
Nature Publishing Group
Subjects:
631/114/1564
631/114/794
Algorithms
Application programming interface
Automation
Bioinformatics
Biological Microscopy
Biological research
Biological Techniques
Biomedical and Life Sciences
Biomedical Engineering/Biotechnology
Breast cancer
Brief Communication
Computer Science
Deep learning
Image processing
Image segmentation
Life Sciences
Machine learning
Microscopy
Morphology
Pipelines
Proteomics
Sensors
Software
Tracking
ISSN:1548-7091, 1548-7105, 1548-7105
Online Access:Get full text
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Description
Summary:TrackMate is an automated tracking software used to analyze bioimages and is distributed as a Fiji plugin. Here, we introduce a new version of TrackMate. TrackMate 7 is built to address the broad spectrum of modern challenges researchers face by integrating state-of-the-art segmentation algorithms into tracking pipelines. We illustrate qualitatively and quantitatively that these new capabilities function effectively across a wide range of bio-imaging experiments. TrackMate 7 combines the benefits of machine and deep learning-based image segmentation with accurate object tracking to enable improved 2D and 3D tracking of diverse objects in biological research.
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ISSN:1548-7091
1548-7105
1548-7105
DOI:10.1038/s41592-022-01507-1