SNP-sites: rapid efficient extraction of SNPs from multi-FASTA alignments

Rapidly decreasing genome sequencing costs have led to a proportionate increase in the number of samples used in prokaryotic population studies. Extracting single nucleotide polymorphisms (SNPs) from a large whole genome alignment is now a routine task, but existing tools have failed to scale effici...

Celý popis

Podrobná bibliografia

Vydané v:	Microbial genomics Ročník 2; číslo 4; s. e000056
Hlavní autori:	Page, Andrew J., Taylor, Ben, Delaney, Aidan J., Soares, Jorge, Seemann, Torsten, Keane, Jacqueline A., Harris, Simon R.
Médium:	Journal Article
Jazyk:	English
Vydavateľské údaje:	England Microbiology Society 01.04.2016
Predmet:	Algorithms Base Sequence Genome - genetics High-Throughput Nucleotide Sequencing Methods Paper Polymorphism, Single Nucleotide - genetics Sequence Alignment Sequence Analysis, DNA - methods Software software high throughput SNP calling
ISSN:	2057-5858, 2057-5858
On-line prístup:	Získať plný text
Tagy:	Pridať tag Žiadne tagy, Buďte prvý, kto otaguje tento záznam!