Genomic characterization of avian and neoavian orthoreoviruses detected in pheasants

•Whole genome sequences and phylogenetic analyses of novel pheasant orthoreoviruses are presented.•Reo/HUN/Pheasant/216/2015 is a reassortant strain showing genetic relationship with turkey, chicken and partridge reoviruses.•Strain D1996/2/1 is distantly related to any currently known avian origin o...

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Published in:	Virus research Vol. 297; p. 198349
Main Authors:	Farkas, Szilvia L., Varga-Kugler, Renáta, Ihász, Katalin, Marton, Szilvia, Gál, János, Palya, Vilmos, Bányai, Krisztián
Format:	Journal Article
Language:	English
Published:	Netherlands Elsevier B.V 01.05.2021
Subjects:	Animals Avian orthoreovirus chickens Galliformes - genetics genes Genetic diversity genetic variation Genome sequencing Genome, Viral genomics gizzard Hungary Neoavian orthoreovirus Orthoreovirus - genetics Orthoreovirus, Avian partridges pheasants Phylogeny poultry industry Reassortment Reoviridae Infections Turkeys vaccines viruses Genetic diversity Genome sequencing Hungary Neoavian orthoreovirus Avian orthoreovirus Reassortment
ISSN:	0168-1702, 1872-7492, 1872-7492
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Abstract	•Whole genome sequences and phylogenetic analyses of novel pheasant orthoreoviruses are presented.•Reo/HUN/Pheasant/216/2015 is a reassortant strain showing genetic relationship with turkey, chicken and partridge reoviruses.•Strain D1996/2/1 is distantly related to any currently known avian origin orthoreoviruses. Avian reoviruses are well-known pathogens seriously affecting the productivity of poultry industry. Game birds represent a small segment of the agricultural sector and much remained to be learnt about factors affecting productivity. Here we show that reovirus infections might occur in pheasants and demonstrate that reoviruses of pheasants are of diverse origin. The complete or coding-complete genomic sequences of two Hungarian reovirus strains, D1996/2/1 and Reo/HUN/Pheasant/216/2015, have been determined in this study. The strain D1996/2/1 was isolated in 2012 from birds with gizzard erosion, whereas the other strain was isolated in 2015 from diarrheic pheasant poults. Phylogenetic analyses showed that none of the Hungarian isolates shared common origin with a pheasant reovirus detected recently in the United States. Additionally, we found that Reo/HUN/Pheasant/216/2015 is a multi-reassortant reovirus within the species Avian orthoreovirus that shared genetic relationship with turkey reoviruses (σC), partridge reoviruses (λA, σB), and chicken reoviruses (λB, λC, μA, σA, and σNS), in the respective gene phylogenies, whereas two genes (μB and μNS) did not reveal any possible common ancestors. The other isolate, D1996/2/1, was found to be distantly related to previously described reoviruses raising the possibility that it might represent a novel orthoreovirus species or a new genogroup within the newly accepted species, Neoavian orthoreovirus. The genetic diversity among pheasant reoviruses could raise challenges for virus classification as well as for development of molecular diagnostic tools and vaccine based prevention and control measures.
AbstractList	Avian reoviruses are well-known pathogens seriously affecting the productivity of poultry industry. Game birds represent a small segment of the agricultural sector and much remained to be learnt about factors affecting productivity. Here we show that reovirus infections might occur in pheasants and demonstrate that reoviruses of pheasants are of diverse origin. The complete or coding-complete genomic sequences of two Hungarian reovirus strains, D1996/2/1 and Reo/HUN/Pheasant/216/2015, have been determined in this study. The strain D1996/2/1 was isolated in 2012 from birds with gizzard erosion, whereas the other strain was isolated in 2015 from diarrheic pheasant poults. Phylogenetic analyses showed that none of the Hungarian isolates shared common origin with a pheasant reovirus detected recently in the United States. Additionally, we found that Reo/HUN/Pheasant/216/2015 is a multi-reassortant reovirus within the species Avian orthoreovirus that shared genetic relationship with turkey reoviruses (σC), partridge reoviruses (λA, σB), and chicken reoviruses (λB, λC, μA, σA, and σNS), in the respective gene phylogenies, whereas two genes (μB and μNS) did not reveal any possible common ancestors. The other isolate, D1996/2/1, was found to be distantly related to previously described reoviruses raising the possibility that it might represent a novel orthoreovirus species or a new genogroup within the newly accepted species, Neoavian orthoreovirus. The genetic diversity among pheasant reoviruses could raise challenges for virus classification as well as for development of molecular diagnostic tools and vaccine based prevention and control measures. Avian reoviruses are well-known pathogens seriously affecting the productivity of poultry industry. Game birds represent a small segment of the agricultural sector and much remained to be learnt about factors affecting productivity. Here we show that reovirus infections might occur in pheasants and demonstrate that reoviruses of pheasants are of diverse origin. The complete or coding-complete genomic sequences of two Hungarian reovirus strains, D1996/2/1 and Reo/HUN/Pheasant/216/2015, have been determined in this study. The strain D1996/2/1 was isolated in 2012 from birds with gizzard erosion, whereas the other strain was isolated in 2015 from diarrheic pheasant poults. Phylogenetic analyses showed that none of the Hungarian isolates shared common origin with a pheasant reovirus detected recently in the United States. Additionally, we found that Reo/HUN/Pheasant/216/2015 is a multi-reassortant reovirus within the species Avian orthoreovirus that shared genetic relationship with turkey reoviruses (σC), partridge reoviruses (λA, σB), and chicken reoviruses (λB, λC, μA, σA, and σNS), in the respective gene phylogenies, whereas two genes (μB and μNS) did not reveal any possible common ancestors. The other isolate, D1996/2/1, was found to be distantly related to previously described reoviruses raising the possibility that it might represent a novel orthoreovirus species or a new genogroup within the newly accepted species, Neoavian orthoreovirus. The genetic diversity among pheasant reoviruses could raise challenges for virus classification as well as for development of molecular diagnostic tools and vaccine based prevention and control measures.Avian reoviruses are well-known pathogens seriously affecting the productivity of poultry industry. Game birds represent a small segment of the agricultural sector and much remained to be learnt about factors affecting productivity. Here we show that reovirus infections might occur in pheasants and demonstrate that reoviruses of pheasants are of diverse origin. The complete or coding-complete genomic sequences of two Hungarian reovirus strains, D1996/2/1 and Reo/HUN/Pheasant/216/2015, have been determined in this study. The strain D1996/2/1 was isolated in 2012 from birds with gizzard erosion, whereas the other strain was isolated in 2015 from diarrheic pheasant poults. Phylogenetic analyses showed that none of the Hungarian isolates shared common origin with a pheasant reovirus detected recently in the United States. Additionally, we found that Reo/HUN/Pheasant/216/2015 is a multi-reassortant reovirus within the species Avian orthoreovirus that shared genetic relationship with turkey reoviruses (σC), partridge reoviruses (λA, σB), and chicken reoviruses (λB, λC, μA, σA, and σNS), in the respective gene phylogenies, whereas two genes (μB and μNS) did not reveal any possible common ancestors. The other isolate, D1996/2/1, was found to be distantly related to previously described reoviruses raising the possibility that it might represent a novel orthoreovirus species or a new genogroup within the newly accepted species, Neoavian orthoreovirus. The genetic diversity among pheasant reoviruses could raise challenges for virus classification as well as for development of molecular diagnostic tools and vaccine based prevention and control measures. •Whole genome sequences and phylogenetic analyses of novel pheasant orthoreoviruses are presented.•Reo/HUN/Pheasant/216/2015 is a reassortant strain showing genetic relationship with turkey, chicken and partridge reoviruses.•Strain D1996/2/1 is distantly related to any currently known avian origin orthoreoviruses. Avian reoviruses are well-known pathogens seriously affecting the productivity of poultry industry. Game birds represent a small segment of the agricultural sector and much remained to be learnt about factors affecting productivity. Here we show that reovirus infections might occur in pheasants and demonstrate that reoviruses of pheasants are of diverse origin. The complete or coding-complete genomic sequences of two Hungarian reovirus strains, D1996/2/1 and Reo/HUN/Pheasant/216/2015, have been determined in this study. The strain D1996/2/1 was isolated in 2012 from birds with gizzard erosion, whereas the other strain was isolated in 2015 from diarrheic pheasant poults. Phylogenetic analyses showed that none of the Hungarian isolates shared common origin with a pheasant reovirus detected recently in the United States. Additionally, we found that Reo/HUN/Pheasant/216/2015 is a multi-reassortant reovirus within the species Avian orthoreovirus that shared genetic relationship with turkey reoviruses (σC), partridge reoviruses (λA, σB), and chicken reoviruses (λB, λC, μA, σA, and σNS), in the respective gene phylogenies, whereas two genes (μB and μNS) did not reveal any possible common ancestors. The other isolate, D1996/2/1, was found to be distantly related to previously described reoviruses raising the possibility that it might represent a novel orthoreovirus species or a new genogroup within the newly accepted species, Neoavian orthoreovirus. The genetic diversity among pheasant reoviruses could raise challenges for virus classification as well as for development of molecular diagnostic tools and vaccine based prevention and control measures.
ArticleNumber	198349
Author	Farkas, Szilvia L. Bányai, Krisztián Marton, Szilvia Palya, Vilmos Varga-Kugler, Renáta Ihász, Katalin Gál, János
Author_xml	– sequence: 1 givenname: Szilvia L. surname: Farkas fullname: Farkas, Szilvia L. organization: Institute for Veterinary Medical Research, Centre for Agricultural Research, Hungaria krt. 21, Budapest, 1143, Hungary – sequence: 2 givenname: Renáta surname: Varga-Kugler fullname: Varga-Kugler, Renáta organization: Institute for Veterinary Medical Research, Centre for Agricultural Research, Hungaria krt. 21, Budapest, 1143, Hungary – sequence: 3 givenname: Katalin surname: Ihász fullname: Ihász, Katalin organization: Institute for Veterinary Medical Research, Centre for Agricultural Research, Hungaria krt. 21, Budapest, 1143, Hungary – sequence: 4 givenname: Szilvia surname: Marton fullname: Marton, Szilvia organization: Institute for Veterinary Medical Research, Centre for Agricultural Research, Hungaria krt. 21, Budapest, 1143, Hungary – sequence: 5 givenname: János surname: Gál fullname: Gál, János organization: University of Veterinary Medicine, Istvan u. 2, Budapest, 1078, Hungary – sequence: 6 givenname: Vilmos surname: Palya fullname: Palya, Vilmos organization: Ceva-Phylaxia Veterinary Biologicals Co. LTD, Szállás u. 5, Budapest, 1107, Hungary – sequence: 7 givenname: Krisztián surname: Bányai fullname: Bányai, Krisztián email: bkrota@hotmail.com organization: Institute for Veterinary Medical Research, Centre for Agricultural Research, Hungaria krt. 21, Budapest, 1143, Hungary
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Cites_doi	10.1080/03079457.2014.973832 10.1016/j.virusres.2016.02.005 10.1099/vir.0.060699-0 10.1038/srep36960 10.1128/jvi.66.3.1817-1822.1992 10.1371/journal.pone.0070075 10.1038/nrmicro.2016.46 10.1016/j.meegid.2016.01.018 10.1099/vir.0.000110 10.1556/030.63.2016.2.8 10.3390/v8030065 10.1099/vir.0.032649-0 10.1093/molbev/mst197 10.1016/j.virusres.2018.09.001 10.1093/bioinformatics/bts199 10.1128/genomeA.00119-16
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Snippet	•Whole genome sequences and phylogenetic analyses of novel pheasant orthoreoviruses are presented.•Reo/HUN/Pheasant/216/2015 is a reassortant strain showing... Avian reoviruses are well-known pathogens seriously affecting the productivity of poultry industry. Game birds represent a small segment of the agricultural...
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SubjectTerms	Animals Avian orthoreovirus chickens Galliformes - genetics genes Genetic diversity genetic variation Genome sequencing Genome, Viral genomics gizzard Hungary Neoavian orthoreovirus Orthoreovirus - genetics Orthoreovirus, Avian partridges pheasants Phylogeny poultry industry Reassortment Reoviridae Infections Turkeys vaccines viruses
Title	Genomic characterization of avian and neoavian orthoreoviruses detected in pheasants
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