Genomic characterization of avian and neoavian orthoreoviruses detected in pheasants
•Whole genome sequences and phylogenetic analyses of novel pheasant orthoreoviruses are presented.•Reo/HUN/Pheasant/216/2015 is a reassortant strain showing genetic relationship with turkey, chicken and partridge reoviruses.•Strain D1996/2/1 is distantly related to any currently known avian origin o...
Uloženo v:
| Vydáno v: | Virus research Ročník 297; s. 198349 |
|---|---|
| Hlavní autoři: | , , , , , , |
| Médium: | Journal Article |
| Jazyk: | angličtina |
| Vydáno: |
Netherlands
Elsevier B.V
01.05.2021
|
| Témata: | |
| ISSN: | 0168-1702, 1872-7492, 1872-7492 |
| On-line přístup: | Získat plný text |
| Tagy: |
Přidat tag
Žádné tagy, Buďte první, kdo vytvoří štítek k tomuto záznamu!
|
| Abstract | •Whole genome sequences and phylogenetic analyses of novel pheasant orthoreoviruses are presented.•Reo/HUN/Pheasant/216/2015 is a reassortant strain showing genetic relationship with turkey, chicken and partridge reoviruses.•Strain D1996/2/1 is distantly related to any currently known avian origin orthoreoviruses.
Avian reoviruses are well-known pathogens seriously affecting the productivity of poultry industry. Game birds represent a small segment of the agricultural sector and much remained to be learnt about factors affecting productivity. Here we show that reovirus infections might occur in pheasants and demonstrate that reoviruses of pheasants are of diverse origin. The complete or coding-complete genomic sequences of two Hungarian reovirus strains, D1996/2/1 and Reo/HUN/Pheasant/216/2015, have been determined in this study. The strain D1996/2/1 was isolated in 2012 from birds with gizzard erosion, whereas the other strain was isolated in 2015 from diarrheic pheasant poults. Phylogenetic analyses showed that none of the Hungarian isolates shared common origin with a pheasant reovirus detected recently in the United States. Additionally, we found that Reo/HUN/Pheasant/216/2015 is a multi-reassortant reovirus within the species Avian orthoreovirus that shared genetic relationship with turkey reoviruses (σC), partridge reoviruses (λA, σB), and chicken reoviruses (λB, λC, μA, σA, and σNS), in the respective gene phylogenies, whereas two genes (μB and μNS) did not reveal any possible common ancestors. The other isolate, D1996/2/1, was found to be distantly related to previously described reoviruses raising the possibility that it might represent a novel orthoreovirus species or a new genogroup within the newly accepted species, Neoavian orthoreovirus. The genetic diversity among pheasant reoviruses could raise challenges for virus classification as well as for development of molecular diagnostic tools and vaccine based prevention and control measures. |
|---|---|
| AbstractList | Avian reoviruses are well-known pathogens seriously affecting the productivity of poultry industry. Game birds represent a small segment of the agricultural sector and much remained to be learnt about factors affecting productivity. Here we show that reovirus infections might occur in pheasants and demonstrate that reoviruses of pheasants are of diverse origin. The complete or coding-complete genomic sequences of two Hungarian reovirus strains, D1996/2/1 and Reo/HUN/Pheasant/216/2015, have been determined in this study. The strain D1996/2/1 was isolated in 2012 from birds with gizzard erosion, whereas the other strain was isolated in 2015 from diarrheic pheasant poults. Phylogenetic analyses showed that none of the Hungarian isolates shared common origin with a pheasant reovirus detected recently in the United States. Additionally, we found that Reo/HUN/Pheasant/216/2015 is a multi-reassortant reovirus within the species Avian orthoreovirus that shared genetic relationship with turkey reoviruses (σC), partridge reoviruses (λA, σB), and chicken reoviruses (λB, λC, μA, σA, and σNS), in the respective gene phylogenies, whereas two genes (μB and μNS) did not reveal any possible common ancestors. The other isolate, D1996/2/1, was found to be distantly related to previously described reoviruses raising the possibility that it might represent a novel orthoreovirus species or a new genogroup within the newly accepted species, Neoavian orthoreovirus. The genetic diversity among pheasant reoviruses could raise challenges for virus classification as well as for development of molecular diagnostic tools and vaccine based prevention and control measures. •Whole genome sequences and phylogenetic analyses of novel pheasant orthoreoviruses are presented.•Reo/HUN/Pheasant/216/2015 is a reassortant strain showing genetic relationship with turkey, chicken and partridge reoviruses.•Strain D1996/2/1 is distantly related to any currently known avian origin orthoreoviruses. Avian reoviruses are well-known pathogens seriously affecting the productivity of poultry industry. Game birds represent a small segment of the agricultural sector and much remained to be learnt about factors affecting productivity. Here we show that reovirus infections might occur in pheasants and demonstrate that reoviruses of pheasants are of diverse origin. The complete or coding-complete genomic sequences of two Hungarian reovirus strains, D1996/2/1 and Reo/HUN/Pheasant/216/2015, have been determined in this study. The strain D1996/2/1 was isolated in 2012 from birds with gizzard erosion, whereas the other strain was isolated in 2015 from diarrheic pheasant poults. Phylogenetic analyses showed that none of the Hungarian isolates shared common origin with a pheasant reovirus detected recently in the United States. Additionally, we found that Reo/HUN/Pheasant/216/2015 is a multi-reassortant reovirus within the species Avian orthoreovirus that shared genetic relationship with turkey reoviruses (σC), partridge reoviruses (λA, σB), and chicken reoviruses (λB, λC, μA, σA, and σNS), in the respective gene phylogenies, whereas two genes (μB and μNS) did not reveal any possible common ancestors. The other isolate, D1996/2/1, was found to be distantly related to previously described reoviruses raising the possibility that it might represent a novel orthoreovirus species or a new genogroup within the newly accepted species, Neoavian orthoreovirus. The genetic diversity among pheasant reoviruses could raise challenges for virus classification as well as for development of molecular diagnostic tools and vaccine based prevention and control measures. Avian reoviruses are well-known pathogens seriously affecting the productivity of poultry industry. Game birds represent a small segment of the agricultural sector and much remained to be learnt about factors affecting productivity. Here we show that reovirus infections might occur in pheasants and demonstrate that reoviruses of pheasants are of diverse origin. The complete or coding-complete genomic sequences of two Hungarian reovirus strains, D1996/2/1 and Reo/HUN/Pheasant/216/2015, have been determined in this study. The strain D1996/2/1 was isolated in 2012 from birds with gizzard erosion, whereas the other strain was isolated in 2015 from diarrheic pheasant poults. Phylogenetic analyses showed that none of the Hungarian isolates shared common origin with a pheasant reovirus detected recently in the United States. Additionally, we found that Reo/HUN/Pheasant/216/2015 is a multi-reassortant reovirus within the species Avian orthoreovirus that shared genetic relationship with turkey reoviruses (σC), partridge reoviruses (λA, σB), and chicken reoviruses (λB, λC, μA, σA, and σNS), in the respective gene phylogenies, whereas two genes (μB and μNS) did not reveal any possible common ancestors. The other isolate, D1996/2/1, was found to be distantly related to previously described reoviruses raising the possibility that it might represent a novel orthoreovirus species or a new genogroup within the newly accepted species, Neoavian orthoreovirus. The genetic diversity among pheasant reoviruses could raise challenges for virus classification as well as for development of molecular diagnostic tools and vaccine based prevention and control measures.Avian reoviruses are well-known pathogens seriously affecting the productivity of poultry industry. Game birds represent a small segment of the agricultural sector and much remained to be learnt about factors affecting productivity. Here we show that reovirus infections might occur in pheasants and demonstrate that reoviruses of pheasants are of diverse origin. The complete or coding-complete genomic sequences of two Hungarian reovirus strains, D1996/2/1 and Reo/HUN/Pheasant/216/2015, have been determined in this study. The strain D1996/2/1 was isolated in 2012 from birds with gizzard erosion, whereas the other strain was isolated in 2015 from diarrheic pheasant poults. Phylogenetic analyses showed that none of the Hungarian isolates shared common origin with a pheasant reovirus detected recently in the United States. Additionally, we found that Reo/HUN/Pheasant/216/2015 is a multi-reassortant reovirus within the species Avian orthoreovirus that shared genetic relationship with turkey reoviruses (σC), partridge reoviruses (λA, σB), and chicken reoviruses (λB, λC, μA, σA, and σNS), in the respective gene phylogenies, whereas two genes (μB and μNS) did not reveal any possible common ancestors. The other isolate, D1996/2/1, was found to be distantly related to previously described reoviruses raising the possibility that it might represent a novel orthoreovirus species or a new genogroup within the newly accepted species, Neoavian orthoreovirus. The genetic diversity among pheasant reoviruses could raise challenges for virus classification as well as for development of molecular diagnostic tools and vaccine based prevention and control measures. |
| ArticleNumber | 198349 |
| Author | Farkas, Szilvia L. Bányai, Krisztián Marton, Szilvia Palya, Vilmos Varga-Kugler, Renáta Ihász, Katalin Gál, János |
| Author_xml | – sequence: 1 givenname: Szilvia L. surname: Farkas fullname: Farkas, Szilvia L. organization: Institute for Veterinary Medical Research, Centre for Agricultural Research, Hungaria krt. 21, Budapest, 1143, Hungary – sequence: 2 givenname: Renáta surname: Varga-Kugler fullname: Varga-Kugler, Renáta organization: Institute for Veterinary Medical Research, Centre for Agricultural Research, Hungaria krt. 21, Budapest, 1143, Hungary – sequence: 3 givenname: Katalin surname: Ihász fullname: Ihász, Katalin organization: Institute for Veterinary Medical Research, Centre for Agricultural Research, Hungaria krt. 21, Budapest, 1143, Hungary – sequence: 4 givenname: Szilvia surname: Marton fullname: Marton, Szilvia organization: Institute for Veterinary Medical Research, Centre for Agricultural Research, Hungaria krt. 21, Budapest, 1143, Hungary – sequence: 5 givenname: János surname: Gál fullname: Gál, János organization: University of Veterinary Medicine, Istvan u. 2, Budapest, 1078, Hungary – sequence: 6 givenname: Vilmos surname: Palya fullname: Palya, Vilmos organization: Ceva-Phylaxia Veterinary Biologicals Co. LTD, Szállás u. 5, Budapest, 1107, Hungary – sequence: 7 givenname: Krisztián surname: Bányai fullname: Bányai, Krisztián email: bkrota@hotmail.com organization: Institute for Veterinary Medical Research, Centre for Agricultural Research, Hungaria krt. 21, Budapest, 1143, Hungary |
| BackLink | https://www.ncbi.nlm.nih.gov/pubmed/33631220$$D View this record in MEDLINE/PubMed |
| BookMark | eNqFkctOAyEUhonRaL28gpmlm6lcZmBIXGiMt8TEja4JwxxSmhYq0Cb69GLHbtx0RUi-_xz4v1N06IMHhC4JnhJM-PV8unFxnSKkKcWUTInsWCMP0IR0gtaikfQQTQrY1URgeoJOU5pjjDkT_BidMMYZoRRP0PsT-LB0pjIzHbXJEN23zi74KthKb5z2lfZD5SGMlxDzLEQI2-2QqgEylNRQOV-tZqCT9jmdoyOrFwku_s4z9PH48H7_XL--Pb3c373WpmlkrhloizWXTW9NJw0BLUXTt1a3UkDLyGB622NuLLScsN4Ch44Q6IQof2WtYWfoapy7iuFzDSmrpUsGFgtd3rtOiraicKz0sx9tZENl27KuoJd_6LpfwqBW0S11_FK70gpwMwImhlQUWGVc3paWo3YLRbD6daTmaudI_TpSo6MS5__iuw17g7djEEqnGwdRJePAGxhcLBLUENy-ET-VoLFl |
| CitedBy_id | crossref_primary_10_1016_j_virol_2024_110216 crossref_primary_10_3389_fvets_2023_1124999 crossref_primary_10_3389_fvets_2025_1648247 crossref_primary_10_3390_ani13223504 crossref_primary_10_1080_03079457_2025_2551119 |
| Cites_doi | 10.1080/03079457.2014.973832 10.1016/j.virusres.2016.02.005 10.1099/vir.0.060699-0 10.1038/srep36960 10.1128/jvi.66.3.1817-1822.1992 10.1371/journal.pone.0070075 10.1038/nrmicro.2016.46 10.1016/j.meegid.2016.01.018 10.1099/vir.0.000110 10.1556/030.63.2016.2.8 10.3390/v8030065 10.1099/vir.0.032649-0 10.1093/molbev/mst197 10.1016/j.virusres.2018.09.001 10.1093/bioinformatics/bts199 10.1128/genomeA.00119-16 |
| ContentType | Journal Article |
| Copyright | 2021 Copyright © 2021. Published by Elsevier B.V. |
| Copyright_xml | – notice: 2021 – notice: Copyright © 2021. Published by Elsevier B.V. |
| DBID | AAYXX CITATION CGR CUY CVF ECM EIF NPM 7X8 7S9 L.6 |
| DOI | 10.1016/j.virusres.2021.198349 |
| DatabaseName | CrossRef Medline MEDLINE MEDLINE (Ovid) MEDLINE MEDLINE PubMed MEDLINE - Academic AGRICOLA AGRICOLA - Academic |
| DatabaseTitle | CrossRef MEDLINE Medline Complete MEDLINE with Full Text PubMed MEDLINE (Ovid) MEDLINE - Academic AGRICOLA AGRICOLA - Academic |
| DatabaseTitleList | MEDLINE MEDLINE - Academic AGRICOLA |
| Database_xml | – sequence: 1 dbid: NPM name: PubMed url: http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed sourceTypes: Index Database – sequence: 2 dbid: 7X8 name: MEDLINE - Academic url: https://search.proquest.com/medline sourceTypes: Aggregation Database |
| DeliveryMethod | fulltext_linktorsrc |
| Discipline | Biology |
| EISSN | 1872-7492 |
| ExternalDocumentID | 33631220 10_1016_j_virusres_2021_198349 S0168170221000563 |
| Genre | Research Support, Non-U.S. Gov't Journal Article |
| GroupedDBID | --- --K --M .GJ .~1 0R~ 0SF 123 1B1 1RT 1~. 1~5 29Q 4.4 457 4G. 53G 5RE 5VS 7-5 71M 8P~ 9JM AAAJQ AABNK AACTN AAEDT AAEDW AAIAV AAIKJ AAKOC AALRI AAOAW AAQFI AAQXK AARKO AAXUO ABBQC ABFNM ABFRF ABJNI ABLVK ABMAC ABMZM ABXDB ABYKQ ACDAQ ACGFO ACGFS ACIUM ACRLP ADBBV ADEZE ADMUD AEBSH AEFWE AEKER AENEX AFKWA AFTJW AFXIZ AGEKW AGHFR AGUBO AGYEJ AHHHB AIEXJ AIKHN AITUG AJBFU AJOXV AJRQY ALMA_UNASSIGNED_HOLDINGS AMFUW AMRAJ ANZVX ASPBG AVWKF AXJTR AZFZN BKOJK BLXMC BNPGV CJTIS CNWQP CS3 DU5 EBS EFJIC EFLBG EJD EO8 EO9 EP2 EP3 F5P FDB FEDTE FGOYB FIRID FNPLU FYGXN G-2 G-Q GBLVA GROUPED_DOAJ HMG HVGLF HZ~ IH2 IHE J1W KOM LCYCR LUGTX M41 MO0 N9A O-L O9- OAUVE OZT P-8 P-9 P2P PC. Q38 R2- RIG ROL RPM RPZ SCC SDF SDG SDP SES SEW SIN SPCBC SSH SSI SSZ T5K WH7 WUQ ZGI ~G- 9DU AAHBH AATTM AAXKI AAYWO AAYXX ABWVN ACIEU ACLOT ACRPL ACVFH ADCNI ADNMO ADVLN AEIPS AEUPX AFJKZ AFPUW AGQPQ AIGII AIIUN AKBMS AKRWK AKYEP ANKPU APXCP CITATION EFKBS ~HD AGCQF AGRNS CGR CUY CVF ECM EIF NPM 7X8 7S9 L.6 |
| ID | FETCH-LOGICAL-c449t-3eaf0a694bfc89c1ea974b5fa597e531dcbfb06cfe5613bfe6e811e87783435c3 |
| ISICitedReferencesCount | 5 |
| ISICitedReferencesURI | http://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=Summon&SrcAuth=ProQuest&DestLinkType=CitingArticles&DestApp=WOS_CPL&KeyUT=000638002900004&url=https%3A%2F%2Fcvtisr.summon.serialssolutions.com%2F%23%21%2Fsearch%3Fho%3Df%26include.ft.matches%3Dt%26l%3Dnull%26q%3D |
| ISSN | 0168-1702 1872-7492 |
| IngestDate | Sat Sep 27 21:55:04 EDT 2025 Sun Sep 28 07:49:36 EDT 2025 Mon Jul 21 06:01:28 EDT 2025 Sat Nov 29 07:26:14 EST 2025 Tue Nov 18 21:26:36 EST 2025 Fri Feb 23 02:46:29 EST 2024 |
| IsDoiOpenAccess | false |
| IsOpenAccess | true |
| IsPeerReviewed | true |
| IsScholarly | true |
| Keywords | Genetic diversity Genome sequencing Hungary Neoavian orthoreovirus Avian orthoreovirus Reassortment |
| Language | English |
| License | Copyright © 2021. Published by Elsevier B.V. |
| LinkModel | OpenURL |
| MergedId | FETCHMERGED-LOGICAL-c449t-3eaf0a694bfc89c1ea974b5fa597e531dcbfb06cfe5613bfe6e811e87783435c3 |
| Notes | ObjectType-Article-1 SourceType-Scholarly Journals-1 ObjectType-Feature-2 content type line 23 |
| OpenAccessLink | https://www.sciencedirect.com/science/article/pii/S0168170221000563 |
| PMID | 33631220 |
| PQID | 2494295538 |
| PQPubID | 23479 |
| ParticipantIDs | proquest_miscellaneous_2574353021 proquest_miscellaneous_2494295538 pubmed_primary_33631220 crossref_citationtrail_10_1016_j_virusres_2021_198349 crossref_primary_10_1016_j_virusres_2021_198349 elsevier_sciencedirect_doi_10_1016_j_virusres_2021_198349 |
| PublicationCentury | 2000 |
| PublicationDate | May 2021 2021-05-00 20210501 |
| PublicationDateYYYYMMDD | 2021-05-01 |
| PublicationDate_xml | – month: 05 year: 2021 text: May 2021 |
| PublicationDecade | 2020 |
| PublicationPlace | Netherlands |
| PublicationPlace_xml | – name: Netherlands |
| PublicationTitle | Virus research |
| PublicationTitleAlternate | Virus Res |
| PublicationYear | 2021 |
| Publisher | Elsevier B.V |
| Publisher_xml | – name: Elsevier B.V |
| References | Lambden, Cooke, Caul, Clarke (bib0055) 1992; 66 McDonald, Nelson, Turner, Patton (bib0065) 2016; 14 Kearse, Moir, Wilson, Stones-Havas, Cheung, Sturrock, Buxton, Cooper, Markowitz, Duran, Thierer, Ashton, Meintjes, Drummond (bib0045) 2012; 28 Dandár, Huhtamo, Farkas, Oldal, Jakab, Vapalahti, Bányai (bib0010) 2014; 95 Mutlu, Grund, Cöven (bib0070) 1998; 26 Dóró, Marton, Horváth Bartókné, Lengyel, Agócs, Jakab, Bányai (bib0015) 2016; 63 Markussen, Løvoll, Tengs, Dahle, Wiik-Nielsen, Grove, Lauksund, Finstad, Robertsen, Rimstad (bib0060) 2013; 8 Ogasawara, Ueda, Kikuchi, Kirisawa (bib0075) 2015; 96 Tang, Lu (bib0090) 2016; 39 Gál, Marton, Ihász, Papp, Jakab, Malik, Bányai, Farkas (bib0030) 2016; 4 Homonnay, Kovács, Bányai, Albert, Fehér, Mató, Tatár-Kis, Palya (bib0035) 2014; 43 Farkas, Varga-Kugler, Marton, Lengyel, Palya, Bányai (bib0025) 2018; 257 Kugler, Marschang, Ihász, Lengyel, Jakab, Bányai, Farkas (bib0050) 2016; 215 Tamura, Stecher, Peterson, Filipski, Kumar (bib0085) 2013; 30 Palacios, Wellehan, Raverty, Bussetti, Hui, Savji, Nollens, Lambourn, Celone, Hutchison, Calisher, Nielsen, Lipkin (bib0080) 2011; 92 Jansen van Vuren, Wiley, Palacios, Storm, McCulloch, Markotter, Birkhead, Kemp, Paweska (bib0040) 2016; 8 Attoui, Mertens, Becnel, Belaganahalli, Bergoin, Brussaard, Chappell, Ciarlet, del Vas, Dermody, Dormitzer, Duncan, Fang, Graham, Guglielmi, Harding, Hillman, Makkay, Marzachì, Matthijnssens, Milne, Mohd Jaafar, Mori, Noordeloos, Omura, Patton, Rao, Maan, Stoltz, Suzuki, Upadhyaya, Wei, Zhou (bib0005) 2011 Farkas, Marton, Dandár, Kugler, Gál, Jakab, Bálint, Kecskeméti, Bányai (bib0020) 2016; 6 Dóró (10.1016/j.virusres.2021.198349_bib0015) 2016; 63 Ogasawara (10.1016/j.virusres.2021.198349_bib0075) 2015; 96 Mutlu (10.1016/j.virusres.2021.198349_bib0070) 1998; 26 Kugler (10.1016/j.virusres.2021.198349_bib0050) 2016; 215 Farkas (10.1016/j.virusres.2021.198349_bib0025) 2018; 257 Palacios (10.1016/j.virusres.2021.198349_bib0080) 2011; 92 Attoui (10.1016/j.virusres.2021.198349_bib0005) 2011 Jansen van Vuren (10.1016/j.virusres.2021.198349_bib0040) 2016; 8 Tamura (10.1016/j.virusres.2021.198349_bib0085) 2013; 30 Tang (10.1016/j.virusres.2021.198349_bib0090) 2016; 39 Farkas (10.1016/j.virusres.2021.198349_bib0020) 2016; 6 Markussen (10.1016/j.virusres.2021.198349_bib0060) 2013; 8 Dandár (10.1016/j.virusres.2021.198349_bib0010) 2014; 95 Kearse (10.1016/j.virusres.2021.198349_bib0045) 2012; 28 Lambden (10.1016/j.virusres.2021.198349_bib0055) 1992; 66 McDonald (10.1016/j.virusres.2021.198349_bib0065) 2016; 14 Gál (10.1016/j.virusres.2021.198349_bib0030) 2016; 4 Homonnay (10.1016/j.virusres.2021.198349_bib0035) 2014; 43 |
| References_xml | – volume: 95 start-page: 898 year: 2014 end-page: 904 ident: bib0010 article-title: Complete genome analysis identifies Tvärminne avian virus as a candidate new species within the genus publication-title: J. Gen. Virol. – volume: 14 start-page: 448 year: 2016 end-page: 460 ident: bib0065 article-title: Reassortment in segmented RNA viruses: mechanisms and outcomes publication-title: Nat. Rev. Microbiol. – volume: 30 start-page: 2725 year: 2013 end-page: 2729 ident: bib0085 article-title: MEGA 6: molecular evolutionary genetics analysis version 6.0 publication-title: Mol. Biol. Evol. – volume: 39 start-page: 120 year: 2016 end-page: 126 ident: bib0090 article-title: Whole genome alignment based one-step real-time RT-PCR for universal detection of avian orthoreoviruses of chicken, pheasant and turkey origins publication-title: Infect. Genet. Evol. – volume: 63 start-page: 243 year: 2016 end-page: 255 ident: bib0015 article-title: Equine-like G3 rotavirus in Hungary, 2015 - is it a novel intergenogroup reassortant pandemic strain? publication-title: Acta Microbiol. Immunol. Hung. – volume: 6 start-page: 36960 year: 2016 ident: bib0020 article-title: Lineage diversification, homo- and heterologous reassortment and recombination shape the evolution of chicken orthoreoviruses publication-title: Sci. Rep. – volume: 66 start-page: 1817 year: 1992 end-page: 1822 ident: bib0055 article-title: Cloning of noncultivatable human rotavirus by single primer amplification publication-title: J. Virol. – volume: 8 year: 2013 ident: bib0060 article-title: Sequence analysis of the genome of piscine orthoreovirus (PRV) associated with heart and skeletal muscle inflammation (HSMI) in Atlantic salmon ( publication-title: PLoS One – volume: 43 start-page: 552 year: 2014 end-page: 560 ident: bib0035 article-title: Tembusu-like flavivirus (Perak virus) as the cause of neurological disease outbreaks in young Pekin ducks publication-title: Avian Pathol. – volume: 26 start-page: 104 year: 1998 end-page: 107 ident: bib0070 article-title: Reovirus infection of pheasants ( publication-title: Tierarztl. Prax. Ausg. G. Grosstiere Nutztiere – volume: 28 start-page: 1647 year: 2012 end-page: 1649 ident: bib0045 article-title: Geneious Basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data publication-title: Bioinformatics – volume: 4 start-page: e00119 year: 2016 end-page: 16 ident: bib0030 article-title: Complete genome sequence of a genotype G23P[37] pheasant rotavirus strain identified in Hungary publication-title: Genome Announc. – volume: 96 start-page: 1777 year: 2015 end-page: 1786 ident: bib0075 article-title: Isolation and genomic characterization of a novel orthoreovirus from a brown-eared bulbul ( publication-title: J. Gen. Virol. – start-page: 541 year: 2011 end-page: 554 ident: bib0005 article-title: Family publication-title: Virus Taxonomy: Classification and Nomenclature of Viruses. Ninth Report of the International Committee on Taxonomy of Viruses – volume: 257 start-page: 57 year: 2018 end-page: 62 ident: bib0025 article-title: Genomic sequence and phylogenetic analyses of two novel orthoreovirus strains isolated from Pekin ducks in 2014 in Germany publication-title: Virus Res. – volume: 8 start-page: 65 year: 2016 ident: bib0040 article-title: Isolation of a novel fusogenic orthoreovirus from Eucampsipoda africana bat flies in South Africa publication-title: Viruses – volume: 215 start-page: 94 year: 2016 end-page: 98 ident: bib0050 article-title: Whole genome characterization of a chelonian orthoreovirus strain identifies significant genetic diversity and may classify reptile orthoreoviruses into distinct species publication-title: Virus Res. – volume: 92 start-page: 2558 year: 2011 end-page: 2565 ident: bib0080 article-title: Discovery of an orthoreovirus in the aborted fetus of a Steller sea lion ( publication-title: J. Gen. Virol. – volume: 43 start-page: 552 issue: 6 year: 2014 ident: 10.1016/j.virusres.2021.198349_bib0035 article-title: Tembusu-like flavivirus (Perak virus) as the cause of neurological disease outbreaks in young Pekin ducks publication-title: Avian Pathol. doi: 10.1080/03079457.2014.973832 – volume: 215 start-page: 94 year: 2016 ident: 10.1016/j.virusres.2021.198349_bib0050 article-title: Whole genome characterization of a chelonian orthoreovirus strain identifies significant genetic diversity and may classify reptile orthoreoviruses into distinct species publication-title: Virus Res. doi: 10.1016/j.virusres.2016.02.005 – volume: 95 start-page: 898 issue: Pt 4 year: 2014 ident: 10.1016/j.virusres.2021.198349_bib0010 article-title: Complete genome analysis identifies Tvärminne avian virus as a candidate new species within the genus Orthoreovirus publication-title: J. Gen. Virol. doi: 10.1099/vir.0.060699-0 – volume: 6 start-page: 36960 year: 2016 ident: 10.1016/j.virusres.2021.198349_bib0020 article-title: Lineage diversification, homo- and heterologous reassortment and recombination shape the evolution of chicken orthoreoviruses publication-title: Sci. Rep. doi: 10.1038/srep36960 – volume: 66 start-page: 1817 issue: 3 year: 1992 ident: 10.1016/j.virusres.2021.198349_bib0055 article-title: Cloning of noncultivatable human rotavirus by single primer amplification publication-title: J. Virol. doi: 10.1128/jvi.66.3.1817-1822.1992 – volume: 8 issue: 7 year: 2013 ident: 10.1016/j.virusres.2021.198349_bib0060 article-title: Sequence analysis of the genome of piscine orthoreovirus (PRV) associated with heart and skeletal muscle inflammation (HSMI) in Atlantic salmon (Salmo salar) publication-title: PLoS One doi: 10.1371/journal.pone.0070075 – volume: 14 start-page: 448 issue: 7 year: 2016 ident: 10.1016/j.virusres.2021.198349_bib0065 article-title: Reassortment in segmented RNA viruses: mechanisms and outcomes publication-title: Nat. Rev. Microbiol. doi: 10.1038/nrmicro.2016.46 – volume: 39 start-page: 120 year: 2016 ident: 10.1016/j.virusres.2021.198349_bib0090 article-title: Whole genome alignment based one-step real-time RT-PCR for universal detection of avian orthoreoviruses of chicken, pheasant and turkey origins publication-title: Infect. Genet. Evol. doi: 10.1016/j.meegid.2016.01.018 – volume: 96 start-page: 1777 issue: Pt 7 year: 2015 ident: 10.1016/j.virusres.2021.198349_bib0075 article-title: Isolation and genomic characterization of a novel orthoreovirus from a brown-eared bulbul (Hypsipetes amaurotis) in Japan publication-title: J. Gen. Virol. doi: 10.1099/vir.0.000110 – volume: 63 start-page: 243 issue: 2 year: 2016 ident: 10.1016/j.virusres.2021.198349_bib0015 article-title: Equine-like G3 rotavirus in Hungary, 2015 - is it a novel intergenogroup reassortant pandemic strain? publication-title: Acta Microbiol. Immunol. Hung. doi: 10.1556/030.63.2016.2.8 – start-page: 541 year: 2011 ident: 10.1016/j.virusres.2021.198349_bib0005 article-title: Family Reoviridae – volume: 8 start-page: 65 year: 2016 ident: 10.1016/j.virusres.2021.198349_bib0040 article-title: Isolation of a novel fusogenic orthoreovirus from Eucampsipoda africana bat flies in South Africa publication-title: Viruses doi: 10.3390/v8030065 – volume: 92 start-page: 2558 issue: Pt 11 year: 2011 ident: 10.1016/j.virusres.2021.198349_bib0080 article-title: Discovery of an orthoreovirus in the aborted fetus of a Steller sea lion (Eumetopias jubatus publication-title: J. Gen. Virol. doi: 10.1099/vir.0.032649-0 – volume: 30 start-page: 2725 issue: 12 year: 2013 ident: 10.1016/j.virusres.2021.198349_bib0085 article-title: MEGA 6: molecular evolutionary genetics analysis version 6.0 publication-title: Mol. Biol. Evol. doi: 10.1093/molbev/mst197 – volume: 257 start-page: 57 year: 2018 ident: 10.1016/j.virusres.2021.198349_bib0025 article-title: Genomic sequence and phylogenetic analyses of two novel orthoreovirus strains isolated from Pekin ducks in 2014 in Germany publication-title: Virus Res. doi: 10.1016/j.virusres.2018.09.001 – volume: 28 start-page: 1647 issue: 12 year: 2012 ident: 10.1016/j.virusres.2021.198349_bib0045 article-title: Geneious Basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data publication-title: Bioinformatics doi: 10.1093/bioinformatics/bts199 – volume: 4 start-page: e00119 issue: 2 year: 2016 ident: 10.1016/j.virusres.2021.198349_bib0030 article-title: Complete genome sequence of a genotype G23P[37] pheasant rotavirus strain identified in Hungary publication-title: Genome Announc. doi: 10.1128/genomeA.00119-16 – volume: 26 start-page: 104 issue: 2 year: 1998 ident: 10.1016/j.virusres.2021.198349_bib0070 article-title: Reovirus infection of pheasants (Phasianus colchicus) publication-title: Tierarztl. Prax. Ausg. G. Grosstiere Nutztiere |
| SSID | ssj0006376 |
| Score | 2.348129 |
| Snippet | •Whole genome sequences and phylogenetic analyses of novel pheasant orthoreoviruses are presented.•Reo/HUN/Pheasant/216/2015 is a reassortant strain showing... Avian reoviruses are well-known pathogens seriously affecting the productivity of poultry industry. Game birds represent a small segment of the agricultural... |
| SourceID | proquest pubmed crossref elsevier |
| SourceType | Aggregation Database Index Database Enrichment Source Publisher |
| StartPage | 198349 |
| SubjectTerms | Animals Avian orthoreovirus chickens Galliformes - genetics genes Genetic diversity genetic variation Genome sequencing Genome, Viral genomics gizzard Hungary Neoavian orthoreovirus Orthoreovirus - genetics Orthoreovirus, Avian partridges pheasants Phylogeny poultry industry Reassortment Reoviridae Infections Turkeys vaccines viruses |
| Title | Genomic characterization of avian and neoavian orthoreoviruses detected in pheasants |
| URI | https://dx.doi.org/10.1016/j.virusres.2021.198349 https://www.ncbi.nlm.nih.gov/pubmed/33631220 https://www.proquest.com/docview/2494295538 https://www.proquest.com/docview/2574353021 |
| Volume | 297 |
| WOSCitedRecordID | wos000638002900004&url=https%3A%2F%2Fcvtisr.summon.serialssolutions.com%2F%23%21%2Fsearch%3Fho%3Df%26include.ft.matches%3Dt%26l%3Dnull%26q%3D |
| hasFullText | 1 |
| inHoldings | 1 |
| isFullTextHit | |
| isPrint | |
| journalDatabaseRights | – providerCode: PRVESC databaseName: Elsevier SD Freedom Collection Journals 2021 customDbUrl: eissn: 1872-7492 dateEnd: 99991231 omitProxy: false ssIdentifier: ssj0006376 issn: 0168-1702 databaseCode: AIEXJ dateStart: 19950101 isFulltext: true titleUrlDefault: https://www.sciencedirect.com providerName: Elsevier |
| link | http://cvtisr.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwtV3db9MwELe6DSReEN90wGQk3qqUfDr244Q2GKAJaWXqW-Q4ttZRJVP6oa3889zFTjY6xkCIl6h1Hdv1XS6_O98HIW80FqLMY-YZI0FBKRT3JKAIjxe-8BVAgiCUTbGJ9PCQj8fiS6_3vY2FWU7TsuTn5-Lsv5Ia2oDYGDr7F-TuBoUG-AxEhyuQHa5_RPj3uok0xpBel4p51cFCucTnGW3lpa7sFzy3qWpdLSf1YqZng0LjsYIuGvdykNQz6ZI9tRD2GDsOXJKgzpi8L-tvNjbsaDWZwsiDz8P2t2Msput9AqTuCi2DqMPz-WDevRMOTmzLbOVcPEA96NgWUx1Y5wA39lVTRRhcOgZa-9m1GBpr0mSgx6a-lcnaimGeAu6PxU9yOrSOvNdkvjU_nA6bfYJ_P8Sph4HgkU2GupZP-wgnxPlCPNpIWLRBtsI0ESASt3YP9sYfuxc5i5rahN0CrwSY_3q2m7DNTbpLg2FGD8h9p3zQXcs0D0lPl4_IXVuO9OIxGTnWoeusQytDG26hwDq0ZR26xjq0ZR06KWnHOk_I1_290bsPnqu64ak4FnMv0tL4kok4N4oLFWgJKmeeGAmqpwaJXajc5D5TRqPumRvNNA8CzVMs2RIlKnpKNsuq1M8J1bEw6AYZJzKPc0xclgpfFkxwmTKWmD5J2v3KlEtJj5VRplnre3iatfuc4T5ndp_75G1335lNynLrHaIlR-agpYWMGXDRrfe-bumXgezFAzUJO72ATrEAOJcAZvhNnwQwOpbmCvrkmSV-t-YoYlEQhv72P6zuBbl3-ai9JJvzeqFfkTtqOZ_M6h2ykY75jmPsH4FSxGU |
| linkProvider | Elsevier |
| openUrl | ctx_ver=Z39.88-2004&ctx_enc=info%3Aofi%2Fenc%3AUTF-8&rfr_id=info%3Asid%2Fsummon.serialssolutions.com&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Ajournal&rft.genre=article&rft.atitle=Genomic+characterization+of+avian+and+neoavian+orthoreoviruses+detected+in+pheasants&rft.jtitle=Virus+research&rft.au=Farkas%2C+Szilvia+L.&rft.au=Varga-Kugler%2C+Ren%C3%A1ta&rft.au=Ih%C3%A1sz%2C+Katalin&rft.au=Marton%2C+Szilvia&rft.date=2021-05-01&rft.pub=Elsevier+B.V&rft.issn=0168-1702&rft.eissn=1872-7492&rft.volume=297&rft_id=info:doi/10.1016%2Fj.virusres.2021.198349&rft.externalDocID=S0168170221000563 |
| thumbnail_l | http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/lc.gif&issn=0168-1702&client=summon |
| thumbnail_m | http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/mc.gif&issn=0168-1702&client=summon |
| thumbnail_s | http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/sc.gif&issn=0168-1702&client=summon |