Optimizing Phylogenomics with Rapidly Evolving Long Exons: Comparison with Anchored Hybrid Enrichment and Ultraconserved Elements

Abstract Marker selection has emerged as an important component of phylogenomic study design due to rising concerns of the effects of gene tree estimation error, model misspecification, and data-type differences. Researchers must balance various trade-offs associated with locus length and evolutiona...

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Bibliographic Details
Published in:	Molecular biology and evolution Vol. 37; no. 3; pp. 904 - 922
Main Authors:	Karin, Benjamin R, Gamble, Tony, Jackman, Todd R
Format:	Journal Article
Language:	English
Published:	United States Oxford University Press 01.03.2020
Subjects:	Animals Bayes Theorem Bayesian analysis Biology Computational Biology - methods Datasets Evolution Evolution, Molecular Exons Genetic diversity Genetic Loci Genomes Lizards Methods Optimization Orthology Phylogenetics Phylogeny RAG1 protein Reptiles Reptiles - classification Reptiles - genetics Sequence Alignment Snakes Whole Genome Sequencing - methods sequence capture phylogenetics anchored hybrid enrichment marker selection reduced representation ultraconserved elements
ISSN:	0737-4038, 1537-1719, 1537-1719
Online Access:	Get full text
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