A reference ontology for biomedical informatics: the Foundational Model of Anatomy

The Foundational Model of Anatomy (FMA), initially developed as an enhancement of the anatomical content of UMLS, is a domain ontology of the concepts and relationships that pertain to the structural organization of the human body. It encompasses the material objects from the molecular to the macros...

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Vydáno v:	Journal of biomedical informatics Ročník 36; číslo 6; s. 478 - 500
Hlavní autoři:	Rosse, Cornelius, Mejino, José L.V.
Médium:	Journal Article
Jazyk:	angličtina
Vydáno:	United States Elsevier Inc 01.12.2003
Témata:	Abstracting and Indexing as Topic - methods Algorithms Anatomy Anatomy - classification Anatomy - standards Artificial Intelligence Bioinformatics Biomedical informatics Computational Biology - methods Database Management Systems Databases, Factual - standards Developmental biology Embryology Humans Information Storage and Retrieval - methods Knowledge representation Linguistics Mereotopology Models, Anatomic National Library of Medicine (U.S.) Natural Language Processing Ontology Semantics Subject Headings Terminology as Topic UMLS Unified Medical Language System - standards United States Vocabulary, Controlled United States Embryology Ontology Mereotopology Developmental biology Biomedical informatics Knowledge representation UMLS Anatomy Bioinformatics
ISSN:	1532-0464, 1532-0480
On-line přístup:	Získat plný text
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Abstract	The Foundational Model of Anatomy (FMA), initially developed as an enhancement of the anatomical content of UMLS, is a domain ontology of the concepts and relationships that pertain to the structural organization of the human body. It encompasses the material objects from the molecular to the macroscopic levels that constitute the body and associates with them non-material entities (spaces, surfaces, lines, and points) required for describing structural relationships. The disciplined modeling approach employed for the development of the FMA relies on a set of declared principles, high level schemes, Aristotelian definitions and a frame-based authoring environment. We propose the FMA as a reference ontology in biomedical informatics for correlating different views of anatomy, aligning existing and emerging ontologies in bioinformatics ontologies and providing a structure-based template for representing biological functions.
AbstractList	The Foundational Model of Anatomy (FMA), initially developed as an enhancement of the anatomical content of UMLS, is a domain ontology of the concepts and relationships that pertain to the structural organization of the human body. It encompasses the material objects from the molecular to the macroscopic levels that constitute the body and associates with them non-material entities (spaces, surfaces, lines, and points) required for describing structural relationships. The disciplined modeling approach employed for the development of the FMA relies on a set of declared principles, high level schemes, Aristotelian definitions and a frame-based authoring environment. We propose the FMA as a reference ontology in biomedical informatics for correlating different views of anatomy, aligning existing and emerging ontologies in bioinformatics ontologies and providing a structure-based template for representing biological functions. The Foundational Model of Anatomy (FMA), initially developed as an enhancement of the anatomical content of UMLS, is a domain ontology of the concepts and relationships that pertain to the structural organization of the human body. It encompasses the material objects from the molecular to the macroscopic levels that constitute the body and associates with them non-material entities (spaces, surfaces, lines, and points) required for describing structural relationships. The disciplined modeling approach employed for the development of the FMA relies on a set of declared principles, high level schemes, Aristotelian definitions and a frame-based authoring environment. We propose the FMA as a reference ontology in biomedical informatics for correlating different views of anatomy, aligning existing and emerging ontologies in bioinformatics ontologies and providing a structure-based template for representing biological functions.The Foundational Model of Anatomy (FMA), initially developed as an enhancement of the anatomical content of UMLS, is a domain ontology of the concepts and relationships that pertain to the structural organization of the human body. It encompasses the material objects from the molecular to the macroscopic levels that constitute the body and associates with them non-material entities (spaces, surfaces, lines, and points) required for describing structural relationships. The disciplined modeling approach employed for the development of the FMA relies on a set of declared principles, high level schemes, Aristotelian definitions and a frame-based authoring environment. We propose the FMA as a reference ontology in biomedical informatics for correlating different views of anatomy, aligning existing and emerging ontologies in bioinformatics ontologies and providing a structure-based template for representing biological functions.
Author	Rosse, Cornelius Mejino, José L.V.
Author_xml	– sequence: 1 givenname: Cornelius surname: Rosse fullname: Rosse, Cornelius email: rosse@u.washington.edu – sequence: 2 givenname: José L.V. surname: Mejino fullname: Mejino, José L.V.
BackLink	https://www.ncbi.nlm.nih.gov/pubmed/14759820$$D View this record in MEDLINE/PubMed
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Snippet	The Foundational Model of Anatomy (FMA), initially developed as an enhancement of the anatomical content of UMLS, is a domain ontology of the concepts and...
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SubjectTerms	Abstracting and Indexing as Topic - methods Algorithms Anatomy Anatomy - classification Anatomy - standards Artificial Intelligence Bioinformatics Biomedical informatics Computational Biology - methods Database Management Systems Databases, Factual - standards Developmental biology Embryology Humans Information Storage and Retrieval - methods Knowledge representation Linguistics Mereotopology Models, Anatomic National Library of Medicine (U.S.) Natural Language Processing Ontology Semantics Subject Headings Terminology as Topic UMLS Unified Medical Language System - standards United States Vocabulary, Controlled
Title	A reference ontology for biomedical informatics: the Foundational Model of Anatomy
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