A point mutation in the zinc-finger transcription factor CqLOL1 controls the green flesh color in chieh-qua (Benincasa hispida Cogn. var. Chieh-qua How)
Flesh color is an essential trait in chieh-qua ( Cogn. var. How); however, the inheritance and molecular basis of green flesh trait remain unclear. In the present study, two F populations, derived from 1742 (white flesh) × FJ3211 (green flesh) and J16 (white flesh) × FJ5 (green flesh), were used to...
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| Vydané v: | Frontiers in plant science Ročník 15; s. 1388115 |
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| Hlavní autori: | , , , |
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| Jazyk: | English |
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21.10.2024
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| Abstract | Flesh color is an essential trait in chieh-qua (
Cogn. var.
How); however, the inheritance and molecular basis of green flesh trait remain unclear.
In the present study, two F
populations, derived from 1742 (white flesh) × FJ3211 (green flesh) and J16 (white flesh) × FJ5 (green flesh), were used to identify the green flesh (
) locus.
Genetic analysis revealed that the presence of green flesh was a quantitative trait that closely followed a normal distribution. Combining the results from QTL mapping and BSA-seq analysis, the
locus was preliminarily determined to be located on chromosome 05 and was narrowed down to a 2.55-Mb interval by linkage analysis. A large J16 × FJ5 F
population comprising 3,180 individuals was subsequently used to screen the recombinants, and the
locus was fine-mapped to a region of 329.70 kb that harbors six genes. One of the candidate genes,
, the zinc-finger transcription factor LOL1 (lsd one like 1 protein;
), was the strongest candidate gene for the
locus according to sequence variation and expression analysis. Additionally, a point mutation (A > C) in
resulted in the substitution of threonine (T) with proline (P) in the amino acid sequence, showing a complete relationship linked with flesh color in a panel of 45 germplasms.
The study suggests that
promotes the accumulation of chlorophyll content in chieh-qua and lead to green flesh. Our findings establish a theoretical and technical foundation for breeding different flesh color lines and elucidating the underlying mechanisms of flesh color in chieh-qua. |
|---|---|
| AbstractList | Flesh color is an essential trait in chieh-qua (
Cogn. var.
How); however, the inheritance and molecular basis of green flesh trait remain unclear.
In the present study, two F
populations, derived from 1742 (white flesh) × FJ3211 (green flesh) and J16 (white flesh) × FJ5 (green flesh), were used to identify the green flesh (
) locus.
Genetic analysis revealed that the presence of green flesh was a quantitative trait that closely followed a normal distribution. Combining the results from QTL mapping and BSA-seq analysis, the
locus was preliminarily determined to be located on chromosome 05 and was narrowed down to a 2.55-Mb interval by linkage analysis. A large J16 × FJ5 F
population comprising 3,180 individuals was subsequently used to screen the recombinants, and the
locus was fine-mapped to a region of 329.70 kb that harbors six genes. One of the candidate genes,
, the zinc-finger transcription factor LOL1 (lsd one like 1 protein;
), was the strongest candidate gene for the
locus according to sequence variation and expression analysis. Additionally, a point mutation (A > C) in
resulted in the substitution of threonine (T) with proline (P) in the amino acid sequence, showing a complete relationship linked with flesh color in a panel of 45 germplasms.
The study suggests that
promotes the accumulation of chlorophyll content in chieh-qua and lead to green flesh. Our findings establish a theoretical and technical foundation for breeding different flesh color lines and elucidating the underlying mechanisms of flesh color in chieh-qua. Flesh color is an essential trait in chieh-qua (Benincasa hispida Cogn. var. Chieh-qua How); however, the inheritance and molecular basis of green flesh trait remain unclear.IntroductionFlesh color is an essential trait in chieh-qua (Benincasa hispida Cogn. var. Chieh-qua How); however, the inheritance and molecular basis of green flesh trait remain unclear.In the present study, two F2 populations, derived from 1742 (white flesh) × FJ3211 (green flesh) and J16 (white flesh) × FJ5 (green flesh), were used to identify the green flesh (Cqgf) locus.MethodsIn the present study, two F2 populations, derived from 1742 (white flesh) × FJ3211 (green flesh) and J16 (white flesh) × FJ5 (green flesh), were used to identify the green flesh (Cqgf) locus.Genetic analysis revealed that the presence of green flesh was a quantitative trait that closely followed a normal distribution. Combining the results from QTL mapping and BSA-seq analysis, the Cqgf locus was preliminarily determined to be located on chromosome 05 and was narrowed down to a 2.55-Mb interval by linkage analysis. A large J16 × FJ5 F2 population comprising 3,180 individuals was subsequently used to screen the recombinants, and the Cqgf locus was fine-mapped to a region of 329.70 kb that harbors six genes. One of the candidate genes, Bch05G003700, the zinc-finger transcription factor LOL1 (lsd one like 1 protein; CqLOL1), was the strongest candidate gene for the Cqgf locus according to sequence variation and expression analysis. Additionally, a point mutation (A > C) in CqLOL1 resulted in the substitution of threonine (T) with proline (P) in the amino acid sequence, showing a complete relationship linked with flesh color in a panel of 45 germplasms.ResultsGenetic analysis revealed that the presence of green flesh was a quantitative trait that closely followed a normal distribution. Combining the results from QTL mapping and BSA-seq analysis, the Cqgf locus was preliminarily determined to be located on chromosome 05 and was narrowed down to a 2.55-Mb interval by linkage analysis. A large J16 × FJ5 F2 population comprising 3,180 individuals was subsequently used to screen the recombinants, and the Cqgf locus was fine-mapped to a region of 329.70 kb that harbors six genes. One of the candidate genes, Bch05G003700, the zinc-finger transcription factor LOL1 (lsd one like 1 protein; CqLOL1), was the strongest candidate gene for the Cqgf locus according to sequence variation and expression analysis. Additionally, a point mutation (A > C) in CqLOL1 resulted in the substitution of threonine (T) with proline (P) in the amino acid sequence, showing a complete relationship linked with flesh color in a panel of 45 germplasms.The study suggests that CqLOL1 promotes the accumulation of chlorophyll content in chieh-qua and lead to green flesh. Our findings establish a theoretical and technical foundation for breeding different flesh color lines and elucidating the underlying mechanisms of flesh color in chieh-qua.DiscussionThe study suggests that CqLOL1 promotes the accumulation of chlorophyll content in chieh-qua and lead to green flesh. Our findings establish a theoretical and technical foundation for breeding different flesh color lines and elucidating the underlying mechanisms of flesh color in chieh-qua. IntroductionFlesh color is an essential trait in chieh-qua (Benincasa hispida Cogn. var. Chieh-qua How); however, the inheritance and molecular basis of green flesh trait remain unclear.MethodsIn the present study, two F2 populations, derived from 1742 (white flesh) × FJ3211 (green flesh) and J16 (white flesh) × FJ5 (green flesh), were used to identify the green flesh (Cqgf) locus.ResultsGenetic analysis revealed that the presence of green flesh was a quantitative trait that closely followed a normal distribution. Combining the results from QTL mapping and BSA-seq analysis, the Cqgf locus was preliminarily determined to be located on chromosome 05 and was narrowed down to a 2.55-Mb interval by linkage analysis. A large J16 × FJ5 F2 population comprising 3,180 individuals was subsequently used to screen the recombinants, and the Cqgf locus was fine-mapped to a region of 329.70 kb that harbors six genes. One of the candidate genes, Bch05G003700, the zinc-finger transcription factor LOL1 (lsd one like 1 protein; CqLOL1), was the strongest candidate gene for the Cqgf locus according to sequence variation and expression analysis. Additionally, a point mutation (A > C) in CqLOL1 resulted in the substitution of threonine (T) with proline (P) in the amino acid sequence, showing a complete relationship linked with flesh color in a panel of 45 germplasms.DiscussionThe study suggests that CqLOL1 promotes the accumulation of chlorophyll content in chieh-qua and lead to green flesh. Our findings establish a theoretical and technical foundation for breeding different flesh color lines and elucidating the underlying mechanisms of flesh color in chieh-qua. |
| Author | Gao, Yin Peng, Jiazhu Qiao, Yanchun Wang, Guoping |
| AuthorAffiliation | 2 Vegetable Research Institute, Guangzhou Academy of Agricultural Sciences , Guangzhou , China 1 Vegetable Research Science Department, Guangzhou Academy of Agricultural and Rural Sciences , Guangzhou , China 3 College of Horticulture, South China Agricultural University , Guangzhou , China |
| AuthorAffiliation_xml | – name: 2 Vegetable Research Institute, Guangzhou Academy of Agricultural Sciences , Guangzhou , China – name: 3 College of Horticulture, South China Agricultural University , Guangzhou , China – name: 1 Vegetable Research Science Department, Guangzhou Academy of Agricultural and Rural Sciences , Guangzhou , China |
| Author_xml | – sequence: 1 givenname: Jiazhu surname: Peng fullname: Peng, Jiazhu – sequence: 2 givenname: Yin surname: Gao fullname: Gao, Yin – sequence: 3 givenname: Yanchun surname: Qiao fullname: Qiao, Yanchun – sequence: 4 givenname: Guoping surname: Wang fullname: Wang, Guoping |
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| Keywords | chlorophyll content flesh color zinc-finger transcription factor LOL1 chieh-qua fine-mapping |
| Language | English |
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| Notes | ObjectType-Article-1 SourceType-Scholarly Journals-1 ObjectType-Feature-2 content type line 14 content type line 23 Shi Liu, Northeast Agricultural University, China Kang Wei, Chinese Academy of Agricultural Sciences, China Reviewed by: Shyam Gundu, West Virginia State University, United States These authors have contributed equally to this work Edited by: Kaijing Zuo, Shanghai Jiao Tong University, China |
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| Snippet | Flesh color is an essential trait in chieh-qua (
Cogn. var.
How); however, the inheritance and molecular basis of green flesh trait remain unclear.
In the... IntroductionFlesh color is an essential trait in chieh-qua ( Benincasa hispida Cogn. var. Chieh-qua How); however, the inheritance and molecular basis of green... Flesh color is an essential trait in chieh-qua (Benincasa hispida Cogn. var. Chieh-qua How); however, the inheritance and molecular basis of green flesh trait... IntroductionFlesh color is an essential trait in chieh-qua (Benincasa hispida Cogn. var. Chieh-qua How); however, the inheritance and molecular basis of green... |
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| SubjectTerms | Agronomy Amino acid substitution Amino acids Benincasa hispida Carotenoids chieh-qua Chlorophyll chlorophyll content Chromosomes Color fine-mapping flesh color Fruits Gene mapping Genes Genetic analysis Genomes Linkage analysis Loci Mutation Normal distribution Plant reproduction Plant Science Point mutation Population studies Proteins Quantitative trait loci Recombinants Transcription factors Zinc Zinc finger proteins zinc-finger transcription factor LOL1 |
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| Title | A point mutation in the zinc-finger transcription factor CqLOL1 controls the green flesh color in chieh-qua (Benincasa hispida Cogn. var. Chieh-qua How) |
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