RNAcentral: a comprehensive database of non-coding RNA sequences

RNAcentral is a database of non-coding RNA (ncRNA) sequences that aggregates data from specialised ncRNA resources and provides a single entry point for accessing ncRNA sequences of all ncRNA types from all organisms. Since its launch in 2014, RNAcentral has integrated twelve new resources, taking t...

Ausführliche Beschreibung

Gespeichert in:

Bibliographische Detailangaben
Veröffentlicht in:	Nucleic acids research Jg. 45; H. D1; S. D128 - D134
Hauptverfasser:	Petrov, Anton I, Kay, Simon J E, Kalvari, Ioanna, Howe, Kevin L, Gray, Kristian A, Bruford, Elspeth A, Kersey, Paul J, Cochrane, Guy, Finn, Robert D, Bateman, Alex, Kozomara, Ana, Griffiths-Jones, Sam, Frankish, Adam, Zwieb, Christian W, Lau, Britney Y, Williams, Kelly P, Chan, Patricia P, Lowe, Todd M, Cannone, Jamie J, Gutell, Robin, Machnicka, Magdalena A, Bujnicki, Janusz M, Yoshihama, Maki, Kenmochi, Naoya, Chai, Benli, Cole, James R, Szymanski, Maciej, Karlowski, Wojciech M, Wood, Valerie, Huala, Eva, Berardini, Tanya Z, Zhao, Yi, Chen, Runsheng, Zhu, Weimin, Paraskevopoulou, Maria D, Vlachos, Ioannis S, Hatzigeorgiou, Artemis G, Ma, Lina, Zhang, Zhang, Puetz, Joern, Stadler, Peter F, McDonald, Daniel, Basu, Siddhartha, Fey, Petra, Engel, Stacia R, Cherry, J Michael, Volders, Pieter-Jan, Mestdagh, Pieter, Wower, Jacek, Clark, Michael B, Quek, Xiu Cheng, Dinger, Marcel E
Format:	Journal Article
Sprache:	Englisch
Veröffentlicht:	England Oxford University Press 04.01.2017
Schlagworte:	Animals Database Issue Databases, Nucleic Acid genome Genomics Humans nucleotides Nucleotides - chemistry rna RNA, Untranslated - chemistry Sequence Analysis, RNA Species Specificity
ISSN:	0305-1048, 1362-4962, 1362-4962
Online-Zugang:	Volltext
Tags:	Tag hinzufügen Keine Tags, Fügen Sie den ersten Tag hinzu!

Abstract	RNAcentral is a database of non-coding RNA (ncRNA) sequences that aggregates data from specialised ncRNA resources and provides a single entry point for accessing ncRNA sequences of all ncRNA types from all organisms. Since its launch in 2014, RNAcentral has integrated twelve new resources, taking the total number of collaborating database to 22, and began importing new types of data, such as modified nucleotides from MODOMICS and PDB. We created new species-specific identifiers that refer to unique RNA sequences within a context of single species. The website has been subject to continuous improvements focusing on text and sequence similarity searches as well as genome browsing functionality. All RNAcentral data is provided for free and is available for browsing, bulk downloads, and programmatic access at http://rnacentral.org/.
AbstractList	RNAcentral is a database of non-coding RNA (ncRNA) sequences that aggregates data from specialised ncRNA resources and provides a single entry point for accessing ncRNA sequences of all ncRNA types from all organisms. Since its launch in 2014, RNAcentral has integrated twelve new resources, taking the total number of collaborating database to 22, and began importing new types of data, such as modified nucleotides from MODOMICS and PDB. We created new species-specific identifiers that refer to unique RNA sequences within a context of single species. The website has been subject to continuous improvements focusing on text and sequence similarity searches as well as genome browsing functionality. All RNAcentral data is provided for free and is available for browsing, bulk downloads, and programmatic access at http://rnacentral.org/. RNAcentral is a database of non-coding RNA (ncRNA) sequences that aggregates data from specialised ncRNA resources and provides a single entry point for accessing ncRNA sequences of all ncRNA types from all organisms. Since its launch in 2014, RNAcentral has integrated twelve new resources, taking the total number of collaborating database to 22, and began importing new types of data, such as modified nucleotides from MODOMICS and PDB. We created new species-specific identifiers that refer to unique RNA sequences within a context of single species. The website has been subject to continuous improvements focusing on text and sequence similarity searches as well as genome browsing functionality. All RNAcentral data is provided for free and is available for browsing, bulk downloads, and programmatic access at rnacentral.org/. RNAcentral is a database of non-coding RNA (ncRNA) sequences that aggregates data from specialised ncRNA resources and provides a single entry point for accessing ncRNA sequences of all ncRNA types from all organisms. Since its launch in 2014, RNAcentral has integrated twelve new resources, taking the total number of collaborating database to 22, and began importing new types of data, such as modified nucleotides from MODOMICS and PDB. We created new species-specific identifiers that refer to unique RNA sequences within a context of single species. The website has been subject to continuous improvements focusing on text and sequence similarity searches as well as genome browsing functionality. All RNAcentral data is provided for free and is available for browsing, bulk downloads, and programmatic access at http://rnacentral.org/. RNAcentral is a database of non-coding RNA (ncRNA) sequences that aggregates data from specialised ncRNA resources and provides a single entry point for accessing ncRNA sequences of all ncRNA types from all organisms. Since its launch in 2014, RNAcentral has integrated twelve new resources, taking the total number of collaborating database to 22, and began importing new types of data, such as modified nucleotides from MODOMICS and PDB. We created new species-specific identifiers that refer to unique RNA sequences within a context of single species. Furthermore, the website has been subject to continuous improvements focusing on text and sequence similarity searches as well as genome browsing functionality. RNAcentral is a database of non-coding RNA (ncRNA) sequences that aggregates data from specialised ncRNA resources and provides a single entry point for accessing ncRNA sequences of all ncRNA types from all organisms. Since its launch in 2014, RNAcentral has integrated twelve new resources, taking the total number of collaborating database to 22, and began importing new types of data, such as modified nucleotides from MODOMICS and PDB. We created new species-specific identifiers that refer to unique RNA sequences within a context of single species. The website has been subject to continuous improvements focusing on text and sequence similarity searches as well as genome browsing functionality. All RNAcentral data is provided for free and is available for browsing, bulk downloads, and programmatic access at http://rnacentral.org/.RNAcentral is a database of non-coding RNA (ncRNA) sequences that aggregates data from specialised ncRNA resources and provides a single entry point for accessing ncRNA sequences of all ncRNA types from all organisms. Since its launch in 2014, RNAcentral has integrated twelve new resources, taking the total number of collaborating database to 22, and began importing new types of data, such as modified nucleotides from MODOMICS and PDB. We created new species-specific identifiers that refer to unique RNA sequences within a context of single species. The website has been subject to continuous improvements focusing on text and sequence similarity searches as well as genome browsing functionality. All RNAcentral data is provided for free and is available for browsing, bulk downloads, and programmatic access at http://rnacentral.org/.
Author	Fey, Petra Puetz, Joern Kalvari, Ioanna Cole, James R Dinger, Marcel E Zhang, Zhang Frankish, Adam Gutell, Robin Bruford, Elspeth A Lau, Britney Y Stadler, Peter F Chen, Runsheng Kay, Simon J E Engel, Stacia R Hatzigeorgiou, Artemis G Vlachos, Ioannis S Cochrane, Guy Wood, Valerie Zhu, Weimin Zwieb, Christian W Bujnicki, Janusz M Mestdagh, Pieter Paraskevopoulou, Maria D Quek, Xiu Cheng Cherry, J Michael Basu, Siddhartha Karlowski, Wojciech M Cannone, Jamie J Finn, Robert D Berardini, Tanya Z Gray, Kristian A Zhao, Yi McDonald, Daniel Howe, Kevin L Lowe, Todd M Ma, Lina Chan, Patricia P Kenmochi, Naoya Kersey, Paul J Petrov, Anton I Griffiths-Jones, Sam Machnicka, Magdalena A Volders, Pieter-Jan Chai, Benli Szymanski, Maciej Wower, Jacek Bateman, Alex Huala, Eva Clark, Michael B Yoshihama, Maki Kozomara, Ana Williams, Kelly P
AuthorAffiliation	14 Michigan State University, East Lansing, MI 48824-1325, USA 24 Bioinformatics Group, Department of Computer Science, and Interdisciplinary Center for Bioinformatics, University of Leipzig, D-04107 Leipzig, Germany 21 "Jacobs University Bremen and Max Planck Institute for Marine Microbiology" 26 dictyBase, Northwestern University, Chicago, IL, USA 2 Faculty of Biology, Medicine and Health, University of Manchester, Oxford Road, Manchester M13 9PT, UK 4 Department of Biomolecular Engineering, University of California Santa Cruz, CA 95064, USA 3 Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridgeshire, CB10 1HH, UK 19 Center for Computational Biology and Bioinformatics, The University of Texas at Austin, Austin, TX 78712, USA 6 Department of Animal Sciences, Auburn University, Auburn, AL 36849, USA 18 Cambridge Systems Biology Centre & Department of Biochemistry, University of Cambridge, Sanger Building, 80 Tennis Court Road, Cambridge CB2 1GA, UK 5 Department of Bi
AuthorAffiliation_xml	– name: 16 Department of Genetics, Stanford University, Stanford, CA 94305, USA – name: 25 Department of Pediatrics, University of California San Diego, La Jolla, CA, USA – name: 2 Faculty of Biology, Medicine and Health, University of Manchester, Oxford Road, Manchester M13 9PT, UK – name: 8 MRC Functional Genomics Unit, Department of Physiology, Anatomy, and Genetics, University of Oxford, Oxford OX1 3PT, UK – name: 6 Department of Animal Sciences, Auburn University, Auburn, AL 36849, USA – name: 3 Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridgeshire, CB10 1HH, UK – name: 17 DIANA-Lab, Department of Electrical & Computer Engineering, University of Thessaly, 382 21 Volos, Greece Hellenic Pasteur Institute, 127 Vasilissis Sofias Avenue, 11521 Athens, Greece – name: 7 Sandia National Laboratories, Livermore, CA 94551, USA – name: 13 Data Science, National Center for Protein Science, Beijing, China – name: 18 Cambridge Systems Biology Centre & Department of Biochemistry, University of Cambridge, Sanger Building, 80 Tennis Court Road, Cambridge CB2 1GA, UK – name: 5 Department of Biochemistry, University of Texas Health Science Center at San Antonio, 7703 Floyd Curl Drive, San Antonio, TX 78229-3900, USA – name: 15 Institute of Molecular Biology and Biotechnology, Faculty of Biology, Adam Mickiewicz University, Umultowska 89, 61-614 Poznan, Poland Department of Computational Biology, Adam Mickiewicz University in Poznan, Poland – name: 22 BIG Data Center and CAS Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing 100101, China – name: 24 Bioinformatics Group, Department of Computer Science, and Interdisciplinary Center for Bioinformatics, University of Leipzig, D-04107 Leipzig, Germany – name: 10 Laboratory of Bioinformatics and Protein Engineering, International Institute of Molecular and Cell Biology, Trojdena 4, 02-109 Warsaw, Poland – name: 26 dictyBase, Northwestern University, Chicago, IL, USA – name: 27 Center for Medical Genetics, Ghent University and Cancer Research Institute Ghent, Ghent University, Ghent, Belgium – name: 9 Garvan Institute of Medical Research, Sydney, New South Wales 2010, Australia – name: 20 The Arabidopsis Information Resource and Phoenix Bioinformatics, 643 Bair Island Rd. Suite 403, Redwood City, CA 94063, USA – name: 11 Frontier Science Research Center, University of Miyazaki, Japan – name: 4 Department of Biomolecular Engineering, University of California Santa Cruz, CA 95064, USA – name: 12 Institute of Computing Technology, Chinese Academy of Sciences, Beijing 100190, China Institute of Biophysics, Chinese Academy of Sciences, Beijing 100101, China – name: 19 Center for Computational Biology and Bioinformatics, The University of Texas at Austin, Austin, TX 78712, USA – name: 14 Michigan State University, East Lansing, MI 48824-1325, USA – name: 21 "Jacobs University Bremen and Max Planck Institute for Marine Microbiology" – name: 23 University of Strasbourg, 15 rue R. Descartes, 67084 Strasbourg, France – name: 1 1European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK
Author_xml	– sequence: 1 givenname: Anton I surname: Petrov fullname: Petrov, Anton I – sequence: 2 givenname: Simon J E surname: Kay fullname: Kay, Simon J E – sequence: 3 givenname: Ioanna surname: Kalvari fullname: Kalvari, Ioanna – sequence: 4 givenname: Kevin L surname: Howe fullname: Howe, Kevin L – sequence: 5 givenname: Kristian A surname: Gray fullname: Gray, Kristian A – sequence: 6 givenname: Elspeth A surname: Bruford fullname: Bruford, Elspeth A organization: 1European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK – sequence: 7 givenname: Paul J surname: Kersey fullname: Kersey, Paul J – sequence: 8 givenname: Guy surname: Cochrane fullname: Cochrane, Guy – sequence: 9 givenname: Robert D surname: Finn fullname: Finn, Robert D – sequence: 10 givenname: Alex surname: Bateman fullname: Bateman, Alex organization: 1European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK – sequence: 11 givenname: Ana surname: Kozomara fullname: Kozomara, Ana – sequence: 12 givenname: Sam surname: Griffiths-Jones fullname: Griffiths-Jones, Sam organization: Faculty of Biology, Medicine and Health, University of Manchester, Oxford Road, Manchester M13 9PT, UK – sequence: 13 givenname: Adam surname: Frankish fullname: Frankish, Adam organization: Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridgeshire, CB10 1HH, UK – sequence: 14 givenname: Christian W surname: Zwieb fullname: Zwieb, Christian W organization: Department of Biochemistry, University of Texas Health Science Center at San Antonio, 7703 Floyd Curl Drive, San Antonio, TX 78229-3900, USA – sequence: 15 givenname: Britney Y surname: Lau fullname: Lau, Britney Y – sequence: 16 givenname: Kelly P surname: Williams fullname: Williams, Kelly P organization: Sandia National Laboratories, Livermore, CA 94551, USA – sequence: 17 givenname: Patricia P surname: Chan fullname: Chan, Patricia P – sequence: 18 givenname: Todd M surname: Lowe fullname: Lowe, Todd M organization: Department of Biomolecular Engineering, University of California Santa Cruz, CA 95064, USA – sequence: 19 givenname: Jamie J surname: Cannone fullname: Cannone, Jamie J organization: Department of Biomolecular Engineering, University of California Santa Cruz, CA 95064, USA – sequence: 20 givenname: Robin surname: Gutell fullname: Gutell, Robin organization: Center for Computational Biology and Bioinformatics, The University of Texas at Austin, Austin, TX 78712, USA – sequence: 21 givenname: Magdalena A surname: Machnicka fullname: Machnicka, Magdalena A – sequence: 22 givenname: Janusz M surname: Bujnicki fullname: Bujnicki, Janusz M organization: Laboratory of Bioinformatics and Protein Engineering, International Institute of Molecular and Cell Biology, Trojdena 4, 02-109 Warsaw, Poland – sequence: 23 givenname: Maki surname: Yoshihama fullname: Yoshihama, Maki – sequence: 24 givenname: Naoya surname: Kenmochi fullname: Kenmochi, Naoya organization: Frontier Science Research Center, University of Miyazaki, Japan – sequence: 25 givenname: Benli surname: Chai fullname: Chai, Benli organization: Michigan State University, East Lansing, MI 48824-1325, USA – sequence: 26 givenname: James R surname: Cole fullname: Cole, James R organization: Michigan State University, East Lansing, MI 48824-1325, USA – sequence: 27 givenname: Maciej surname: Szymanski fullname: Szymanski, Maciej – sequence: 28 givenname: Wojciech M surname: Karlowski fullname: Karlowski, Wojciech M organization: Institute of Molecular Biology and Biotechnology, Faculty of Biology, Adam Mickiewicz University, Umultowska 89, 61-614 Poznan, Poland Department of Computational Biology, Adam Mickiewicz University in Poznan, Poland – sequence: 29 givenname: Valerie surname: Wood fullname: Wood, Valerie organization: Cambridge Systems Biology Centre & Department of Biochemistry, University of Cambridge, Sanger Building, 80 Tennis Court Road, Cambridge CB2 1GA, UK – sequence: 30 givenname: Eva surname: Huala fullname: Huala, Eva – sequence: 31 givenname: Tanya Z surname: Berardini fullname: Berardini, Tanya Z organization: The Arabidopsis Information Resource and Phoenix Bioinformatics, 643 Bair Island Rd. Suite 403, Redwood City, CA 94063, USA – sequence: 32 givenname: Yi surname: Zhao fullname: Zhao, Yi – sequence: 33 givenname: Runsheng surname: Chen fullname: Chen, Runsheng organization: Institute of Computing Technology, Chinese Academy of Sciences, Beijing 100190, China Institute of Biophysics, Chinese Academy of Sciences, Beijing 100101, China – sequence: 34 givenname: Weimin surname: Zhu fullname: Zhu, Weimin organization: Data Science, National Center for Protein Science, Beijing, China – sequence: 35 givenname: Maria D surname: Paraskevopoulou fullname: Paraskevopoulou, Maria D – sequence: 36 givenname: Ioannis S surname: Vlachos fullname: Vlachos, Ioannis S – sequence: 37 givenname: Artemis G surname: Hatzigeorgiou fullname: Hatzigeorgiou, Artemis G organization: DIANA-Lab, Department of Electrical & Computer Engineering, University of Thessaly, 382 21 Volos, Greece Hellenic Pasteur Institute, 127 Vasilissis Sofias Avenue, 11521 Athens, Greece – sequence: 38 givenname: Lina surname: Ma fullname: Ma, Lina – sequence: 39 givenname: Zhang surname: Zhang fullname: Zhang, Zhang organization: BIG Data Center and CAS Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing 100101, China – sequence: 40 givenname: Joern surname: Puetz fullname: Puetz, Joern organization: University of Strasbourg, 15 rue R. Descartes, 67084 Strasbourg, France – sequence: 41 givenname: Peter F surname: Stadler fullname: Stadler, Peter F organization: Bioinformatics Group, Department of Computer Science, and Interdisciplinary Center for Bioinformatics, University of Leipzig, D-04107 Leipzig, Germany – sequence: 42 givenname: Daniel surname: McDonald fullname: McDonald, Daniel organization: Department of Pediatrics, University of California San Diego, La Jolla, CA, USA – sequence: 43 givenname: Siddhartha surname: Basu fullname: Basu, Siddhartha – sequence: 44 givenname: Petra surname: Fey fullname: Fey, Petra organization: dictyBase, Northwestern University, Chicago, IL, USA – sequence: 45 givenname: Stacia R surname: Engel fullname: Engel, Stacia R – sequence: 46 givenname: J Michael surname: Cherry fullname: Cherry, J Michael organization: Department of Genetics, Stanford University, Stanford, CA 94305, USA – sequence: 47 givenname: Pieter-Jan surname: Volders fullname: Volders, Pieter-Jan – sequence: 48 givenname: Pieter surname: Mestdagh fullname: Mestdagh, Pieter organization: Center for Medical Genetics, Ghent University and Cancer Research Institute Ghent, Ghent University, Ghent, Belgium – sequence: 49 givenname: Jacek surname: Wower fullname: Wower, Jacek organization: Department of Animal Sciences, Auburn University, Auburn, AL 36849, USA – sequence: 50 givenname: Michael B surname: Clark fullname: Clark, Michael B organization: MRC Functional Genomics Unit, Department of Physiology, Anatomy, and Genetics, University of Oxford, Oxford OX1 3PT, UK – sequence: 51 givenname: Xiu Cheng surname: Quek fullname: Quek, Xiu Cheng organization: Garvan Institute of Medical Research, Sydney, New South Wales 2010, Australia – sequence: 52 givenname: Marcel E surname: Dinger fullname: Dinger, Marcel E organization: Garvan Institute of Medical Research, Sydney, New South Wales 2010, Australia
BackLink	https://www.ncbi.nlm.nih.gov/pubmed/27794554$$D View this record in MEDLINE/PubMed https://univoak.hal.science/hal-05259699$$DView record in HAL https://www.osti.gov/servlets/purl/1343623$$D View this record in Osti.gov
BookMark	eNptkUtvEzEUhS1URNPCij0asQJV0_r6lTELRFT1JUUgIVhbHvtOYpjYYTwJ4t_XUdIKKlaW7e-ce-xzQo5iikjIa6DnQDW_iHa4WPz8DZQ2z8gEuGK10IodkQnlVNZARXNMTnL-QSkIkOIFOWbTqRZSign59PXzzGEcB9t_qGzl0mo94BJjDlusvB1tazNWqavK0NolH-KiKpIq468NRof5JXne2T7jq8N6Sr5fX327vK3nX27uLmfz2gnBxtpzxVulXaM72rWtKFvvpGXCSu699JZb6xhVrkXFFTDZylZTAOWZZM53_JR83PuuN-0K_SGzWQ9hZYc_Jtlg_r2JYWkWaWskAyqhKQZv9wYpj8FkF0Z0S5diRDca4CUR4wV6v4eWT7xvZ3OzO6OSSa203kJh3x0SDal8Rh7NKmSHfW8jpk02ZaZUDdDptKBv_g7_6PzQQwFgD7gh5TxgZ0o-O4a0e0voDVCz69qUrs2h66I5e6J5sP0ffQ-D_qsH
CitedBy_id	crossref_primary_10_3389_fgene_2024_1463474 crossref_primary_10_3389_fmicb_2021_671852 crossref_primary_10_3390_cells12030359 crossref_primary_10_1093_nar_gky1001 crossref_primary_10_1182_blood_2023021991 crossref_primary_10_1016_j_asoc_2025_113795 crossref_primary_10_3390_life12040540 crossref_primary_10_1016_j_jmb_2024_168556 crossref_primary_10_3390_ijms25031673 crossref_primary_10_1093_bib_bby050 crossref_primary_10_1002_arch_22062 crossref_primary_10_1016_j_jbiotec_2017_05_019 crossref_primary_10_1038_s41576_018_0017_y crossref_primary_10_1074_jbc_RA118_004445 crossref_primary_10_1093_nar_gkx1154 crossref_primary_10_1093_nar_gkx1038 crossref_primary_10_1016_j_csbj_2023_11_025 crossref_primary_10_1016_j_ymeth_2024_05_004 crossref_primary_10_1093_bib_bby054 crossref_primary_10_1093_nar_gkaa811 crossref_primary_10_3390_ijms231911825 crossref_primary_10_1016_j_diff_2019_05_001 crossref_primary_10_3390_ijms222010969 crossref_primary_10_1007_s00299_017_2210_4 crossref_primary_10_3390_antibiotics10111384 crossref_primary_10_1093_biomethods_bpae097 crossref_primary_10_1523_JNEUROSCI_2370_17_2018 crossref_primary_10_1093_bib_bbad421 crossref_primary_10_1016_j_molcel_2022_06_023 crossref_primary_10_1007_s10722_020_00943_2 crossref_primary_10_1371_journal_pone_0229606 crossref_primary_10_1186_s12864_024_10439_3 crossref_primary_10_1038_s41598_024_79204_6 crossref_primary_10_1161_CIRCULATIONAHA_119_039596 crossref_primary_10_3390_ncrna11030038 crossref_primary_10_1093_bib_bby039 crossref_primary_10_1093_nar_gkac1029 crossref_primary_10_1186_s12859_021_03955_6 crossref_primary_10_1093_bib_bbad334 crossref_primary_10_1016_j_idairyj_2025_106422 crossref_primary_10_1016_j_gene_2021_145803 crossref_primary_10_1093_femsml_uqac027 crossref_primary_10_1002_jcp_30809 crossref_primary_10_1038_s41467_019_13395_9 crossref_primary_10_1371_journal_pcbi_1009291 crossref_primary_10_1101_gr_277792_123 crossref_primary_10_1016_j_heliyon_2024_e41488 crossref_primary_10_1093_nar_gky1031 crossref_primary_10_1186_s12864_017_4396_9 crossref_primary_10_1016_j_indcrop_2020_112549 crossref_primary_10_1093_nar_gky1034 crossref_primary_10_3390_cells12182272 crossref_primary_10_1093_bib_bbac112 crossref_primary_10_1080_15476286_2019_1657743 crossref_primary_10_1371_journal_pone_0296959 crossref_primary_10_1186_s40824_023_00396_5 crossref_primary_10_1016_j_jare_2025_08_063 crossref_primary_10_1007_s12539_021_00428_5 crossref_primary_10_3390_ani11020366 crossref_primary_10_3390_ijms19041208 crossref_primary_10_1371_journal_pone_0289879 crossref_primary_10_1002_1878_0261_12424 crossref_primary_10_1016_j_omtn_2022_01_021 crossref_primary_10_1016_j_jceh_2018_04_016 crossref_primary_10_1186_s12859_018_2298_8 crossref_primary_10_1371_journal_pone_0320282 crossref_primary_10_1007_s10142_025_01527_y crossref_primary_10_1093_nar_gkad957 crossref_primary_10_1093_jxb_erz136 crossref_primary_10_1093_nar_gky1043 crossref_primary_10_1146_annurev_biodatasci_072018_021321 crossref_primary_10_3390_microorganisms13051068 crossref_primary_10_3390_ncrna6030035 crossref_primary_10_3390_genes13040588 crossref_primary_10_1093_nar_gky960 crossref_primary_10_1038_s41598_022_22362_2 crossref_primary_10_1038_s41598_020_67782_0 crossref_primary_10_1007_s10115_023_02049_4 crossref_primary_10_1093_nar_gkaa452 crossref_primary_10_15252_embr_202256105 crossref_primary_10_3390_cancers15102833 crossref_primary_10_3390_ijms22083882 crossref_primary_10_1007_s13353_024_00860_5 crossref_primary_10_1101_gr_269589_120 crossref_primary_10_1038_s41598_017_17510_y crossref_primary_10_1073_pnas_2112677119 crossref_primary_10_1186_s13567_021_00912_2 crossref_primary_10_1261_rna_060996_117 crossref_primary_10_1038_s41597_021_00979_8 crossref_primary_10_1186_s40104_019_0424_8 crossref_primary_10_1002_wrna_1530 crossref_primary_10_1186_s12915_021_01104_2 crossref_primary_10_1186_s12864_023_09909_x crossref_primary_10_1038_s41598_023_32717_y crossref_primary_10_3390_plants8020047 crossref_primary_10_1128_mra_00071_22 crossref_primary_10_1093_nar_gkaa028 crossref_primary_10_1038_s42003_024_05952_w crossref_primary_10_1016_j_molcel_2017_12_023 crossref_primary_10_3389_fonc_2021_654687 crossref_primary_10_1038_s44318_025_00449_6 crossref_primary_10_1371_journal_pcbi_1011047 crossref_primary_10_1186_s12859_019_3081_1 crossref_primary_10_3389_fgene_2021_635794 crossref_primary_10_1016_j_cell_2024_09_001 crossref_primary_10_1084_jem_20201503 crossref_primary_10_1261_rna_080285_124 crossref_primary_10_1007_s42994_022_00084_3 crossref_primary_10_3390_life11020118 crossref_primary_10_1093_gigascience_giaa003 crossref_primary_10_1111_nph_18446 crossref_primary_10_1080_2162402X_2018_1538436 crossref_primary_10_1016_j_molmed_2017_11_003 crossref_primary_10_1093_nargab_lqac012 crossref_primary_10_3390_ijms19010123 crossref_primary_10_1007_s00403_020_02052_7 crossref_primary_10_1038_s41467_020_20303_z crossref_primary_10_1186_s12864_021_07615_0 crossref_primary_10_1016_j_drudis_2018_05_041 crossref_primary_10_1093_nar_gkae1043 crossref_primary_10_1134_S2079059717070036
Cites_doi	10.1093/nar/gku1060 10.1093/nar/gkv1252 10.1093/nar/gkv1270 10.1093/nar/gkv1046 10.1093/nar/gkr1029 10.1016/j.biochi.2010.12.016 10.1128/MCB.18.12.6897 10.1016/j.molcel.2007.03.015 10.1016/j.molcel.2014.02.024 10.1126/science.aac8159 10.1038/ismej.2011.139 10.1093/nar/gks1007 10.1093/nar/gku1063 10.1093/nar/gku1215 10.1093/nar/gku1026 10.1261/rna.055301.115 10.1002/wrna.1284 10.1007/s00018-016-2217-y 10.1093/nar/gkv1275 10.1093/nar/gku1040 10.1093/nar/gkv1157 10.1038/ejhg.2013.282 10.1093/bioinformatics/btq321 10.1186/s12977-016-0267-8 10.1261/rna.2750811 10.1093/nar/gkr954 10.1186/gb-2011-12-4-221 10.1093/bioinformatics/btt403 10.1093/nar/gks1064 10.1093/nar/gkv1209 10.1093/nar/gks1219 10.1093/nar/gkw558 10.1186/1471-2105-3-1 10.1093/bioinformatics/btv372 10.1093/nar/gkw482 10.1002/dvg.22877 10.1093/nar/gku991 10.1093/nar/gkv1309 10.1093/nar/gkt1244 10.1093/nar/gkv1047 10.1371/journal.pone.0148940 10.1093/nar/gkv316 10.1186/1756-0500-6-426 10.1371/journal.pone.0080673 10.1038/nmeth.3508
ContentType	Journal Article
Copyright	The Author(s) 2016. Published by Oxford University Press on behalf of Nucleic Acids Research. Attribution The Author(s) 2016. Published by Oxford University Press on behalf of Nucleic Acids Research. 2016
Copyright_xml	– notice: The Author(s) 2016. Published by Oxford University Press on behalf of Nucleic Acids Research. – notice: Attribution – notice: The Author(s) 2016. Published by Oxford University Press on behalf of Nucleic Acids Research. 2016
CorporateAuthor	The RNAcentral Consortium Sandia National Laboratories (SNL-CA), Livermore, CA (United States)
CorporateAuthor_xml	– name: The RNAcentral Consortium – name: Sandia National Laboratories (SNL-CA), Livermore, CA (United States)
DBID	AAYXX CITATION CGR CUY CVF ECM EIF NPM 7X8 1XC VOOES OIOZB OTOTI 5PM
DOI	10.1093/nar/gkw1008
DatabaseName	CrossRef Medline MEDLINE MEDLINE (Ovid) MEDLINE MEDLINE PubMed MEDLINE - Academic Hyper Article en Ligne (HAL) Hyper Article en Ligne (HAL) (Open Access) OSTI.GOV - Hybrid OSTI.GOV PubMed Central (Full Participant titles)
DatabaseTitle	CrossRef MEDLINE Medline Complete MEDLINE with Full Text PubMed MEDLINE (Ovid) MEDLINE - Academic
DatabaseTitleList	MEDLINE MEDLINE - Academic
Database_xml	– sequence: 1 dbid: NPM name: PubMed url: http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed sourceTypes: Index Database – sequence: 2 dbid: 7X8 name: MEDLINE - Academic url: https://search.proquest.com/medline sourceTypes: Aggregation Database
DeliveryMethod	fulltext_linktorsrc
Discipline	Anatomy & Physiology Chemistry
EISSN	1362-4962
EndPage	D134
ExternalDocumentID	PMC5210518 1343623 oai:HAL:hal-05259699v1 27794554 10_1093_nar_gkw1008
Genre	Research Support, Non-U.S. Gov't Journal Article
GrantInformation_xml	– fundername: Wellcome Trust – fundername: NHGRI NIH HHS grantid: U24 HG003345 – fundername: NHGRI NIH HHS grantid: R01 HG006753 – fundername: Biotechnology and Biological Sciences Research Council grantid: BB/J019232/1
GroupedDBID	--- -DZ -~X .I3 0R~ 123 18M 1TH 29N 2WC 4.4 482 53G 5VS 5WA 70E 85S A8Z AAFWJ AAHBH AAMVS AAOGV AAPXW AAUQX AAVAP AAYXX ABEJV ABGNP ABPTD ABQLI ABXVV ACGFO ACGFS ACIWK ACNCT ACPRK ACUTJ ADBBV ADHZD AEGXH AENEX AENZO AFFNX AFPKN AFRAH AFYAG AHMBA AIAGR ALMA_UNASSIGNED_HOLDINGS ALUQC AMNDL AOIJS BAWUL BAYMD BCNDV CAG CIDKT CITATION CS3 CZ4 DIK DU5 D~K E3Z EBD EBS EJD EMOBN F5P GROUPED_DOAJ GX1 H13 HH5 HYE HZ~ IH2 KAQDR KQ8 KSI OAWHX OBC OBS OEB OES OJQWA OVT P2P PEELM PQQKQ R44 RD5 RNS ROL ROZ RPM RXO SV3 TN5 TOX TR2 WG7 WOQ X7H XSB YSK ZKX ~91 ~D7 ~KM AAPPN ADIXU AFULF BTTYL CGR CUY CVF ECM EIF M49 M~E NPM ROX 7X8 ESTFP .55 .GJ 1XC 3O- AAWDT AAYJJ ABIME ABNGD ABPIB ABSMQ ABZEO ACFRR ACIPB ACPQN ACUKT ACVCV ACZBC AEHUL AEKPW AFSHK AGKRT AGMDO AGQPQ ANFBD APJGH AQDSO ASAOO ASPBG ATDFG ATTQO AVWKF AZFZN BEYMZ C1A COF CXTWN D0S DFGAJ ELUNK FEDTE HVGLF H~9 MBTAY MVM NTWIH OVD O~Y PB- QBD RNI RZF RZO SJN TCN TEORI UHB VOOES X7M XSW ZXP OIOZB OTOTI 5PM
ID	FETCH-LOGICAL-c442t-d363b69c89f0fbb4363dc5a24a53dd5da3aac206cbe636125b5b90116d252cdf3
ISICitedReferencesCount	148
ISICitedReferencesURI	http://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=Summon&SrcAuth=ProQuest&DestLinkType=CitingArticles&DestApp=WOS_CPL&KeyUT=000396575500020&url=https%3A%2F%2Fcvtisr.summon.serialssolutions.com%2F%23%21%2Fsearch%3Fho%3Df%26include.ft.matches%3Dt%26l%3Dnull%26q%3D
ISSN	0305-1048 1362-4962
IngestDate	Tue Sep 30 16:53:11 EDT 2025 Mon Jun 16 03:18:04 EDT 2025 Tue Oct 14 20:54:32 EDT 2025 Sun Nov 09 13:32:05 EST 2025 Wed Feb 19 02:00:56 EST 2025 Sat Nov 29 03:24:41 EST 2025 Tue Nov 18 21:02:53 EST 2025
IsDoiOpenAccess	true
IsOpenAccess	true
IsPeerReviewed	true
IsScholarly	true
Issue	D1
Language	English
License	http://creativecommons.org/licenses/cc-by/4.0 The Author(s) 2016. Published by Oxford University Press on behalf of Nucleic Acids Research. Attribution: http://creativecommons.org/licenses/by This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
LinkModel	OpenURL
MergedId	FETCHMERGED-LOGICAL-c442t-d363b69c89f0fbb4363dc5a24a53dd5da3aac206cbe636125b5b90116d252cdf3
Notes	ObjectType-Article-1 SourceType-Scholarly Journals-1 ObjectType-Feature-2 content type line 23 SAND--2017-0752J AC04-94AL85000 USDOE National Nuclear Security Administration (NNSA)
OpenAccessLink	http://dx.doi.org/10.1093/nar/gkw1008
PMID	27794554
PQID	1835681077
PQPubID	23479
ParticipantIDs	pubmedcentral_primary_oai_pubmedcentral_nih_gov_5210518 osti_scitechconnect_1343623 hal_primary_oai_HAL_hal_05259699v1 proquest_miscellaneous_1835681077 pubmed_primary_27794554 crossref_citationtrail_10_1093_nar_gkw1008 crossref_primary_10_1093_nar_gkw1008
PublicationCentury	2000
PublicationDate	2017-01-04
PublicationDateYYYYMMDD	2017-01-04
PublicationDate_xml	– month: 01 year: 2017 text: 2017-01-04 day: 04
PublicationDecade	2010
PublicationPlace	England
PublicationPlace_xml	– name: England – name: United States
PublicationTitle	Nucleic acids research
PublicationTitleAlternate	Nucleic Acids Res
PublicationYear	2017
Publisher	Oxford University Press
Publisher_xml	– name: Oxford University Press
References	McDowall ( key 2019022510402741500_B11) 2015; 43 Speir ( key 2019022510402741500_B34) 2016; 44 Zhao ( key 2019022510402741500_B15) 2016; 44 Shimoyama ( key 2019022510402741500_B41) 2015; 43 Yates ( key 2019022510402741500_B32) 2016; 44 Osterman ( key 2019022510402741500_B21) 2011; 93 Pircher ( key 2019022510402741500_B27) 2014; 54 Duechler ( key 2019022510402741500_B22) 2016; 73 Cannone ( key 2019022510402741500_B42) 2002; 3 Wheeler ( key 2019022510402741500_B30) 2013; 29 Velankar ( key 2019022510402741500_B17) 2016; 44 Attrill ( key 2019022510402741500_B40) 2016; 44 Durkin ( key 2019022510402741500_B36) 2016; 13 Machnicka ( key 2019022510402741500_B23) 2013; 41 Kersey ( key 2019022510402741500_B33) 2016; 44 Krogh ( key 2019022510402741500_B25) 2016 Dupuis-Sandoval ( key 2019022510402741500_B18) 2015; 6 Squizzato ( key 2019022510402741500_B26) 2015; 43 Axtell ( key 2019022510402741500_B3) 2011; 12 Basu ( key 2019022510402741500_B10) 2013; 41 Cole ( key 2019022510402741500_B9) 2014; 42 Berardini ( key 2019022510402741500_B13) 2015; 53 Quast ( key 2019022510402741500_B7) 2013; 41 Hang ( key 2019022510402741500_B2) 2015; 349 Tomita ( key 2019022510402741500_B4) 2016 Cozen ( key 2019022510402741500_B24) 2015; 12 Paraskevopoulou ( key 2019022510402741500_B46) 2016; 44 Cherry ( key 2019022510402741500_B12) 2012; 40 Nawrocki ( key 2019022510402741500_B44) 2015; 43 Yoshihama ( key 2019022510402741500_B19) 2013; 6 Yook ( key 2019022510402741500_B14) 2012; 40 Derenko ( key 2019022510402741500_B29) 2013; 8 Consortium, RNAcentral ( key 2019022510402741500_B6) 2015; 43 Chan ( key 2019022510402741500_B43) 2016; 44 Kerpedjiev ( key 2019022510402741500_B37) 2015; 31 Vlachos ( key 2019022510402741500_B45) 2015; 43 McDonald ( key 2019022510402741500_B8) 2012; 6 Jossinet ( key 2019022510402741500_B38) 2010; 26 Beringer ( key 2019022510402741500_B1) 2007; 26 Smith ( key 2019022510402741500_B31) 1998; 18 Huntley ( key 2019022510402741500_B20) 2016; 22 Eggenhofer ( key 2019022510402741500_B39) 2016 Volders ( key 2019022510402741500_B16) 2015; 43 Bateman ( key 2019022510402741500_B5) 2011; 17 Al-Tobasei ( key 2019022510402741500_B35) 2016; 11 Li ( key 2019022510402741500_B28) 2014; 22
References_xml	– volume: 43 start-page: D174 year: 2015 ident: key 2019022510402741500_B16 article-title: An update on LNCipedia: a database for annotated human lncRNA sequences publication-title: Nucleic Acids Res. doi: 10.1093/nar/gku1060 – volume: 44 start-page: D203 year: 2016 ident: key 2019022510402741500_B15 article-title: NONCODE 2016: an informative and valuable data source of long non-coding RNAs publication-title: Nucleic Acids Res. doi: 10.1093/nar/gkv1252 – volume: 44 start-page: D231 year: 2016 ident: key 2019022510402741500_B46 article-title: DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts publication-title: Nucleic Acids Res. doi: 10.1093/nar/gkv1270 – volume: 44 start-page: D786 year: 2016 ident: key 2019022510402741500_B40 article-title: FlyBase: establishing a Gene Group resource for Drosophila melanogaster publication-title: Nucleic Acids Res. doi: 10.1093/nar/gkv1046 – volume: 40 start-page: D700 year: 2012 ident: key 2019022510402741500_B12 article-title: Saccharomyces Genome Database: the genomics resource of budding yeast publication-title: Nucleic Acids Res. doi: 10.1093/nar/gkr1029 – volume: 93 start-page: 725 year: 2011 ident: key 2019022510402741500_B21 article-title: Methylated 23S rRNA nucleotide m2G1835 of Escherichia coli ribosome facilitates subunit association publication-title: Biochimie doi: 10.1016/j.biochi.2010.12.016 – volume: 18 start-page: 6897 year: 1998 ident: key 2019022510402741500_B31 article-title: Classification of gas5 as a multi-small-nucleolar-RNA (snoRNA) host gene and a member of the 5’-terminal oligopyrimidine gene family reveals common features of snoRNA host genes publication-title: Mol. Cell. Biol. doi: 10.1128/MCB.18.12.6897 – volume: 26 start-page: 311 year: 2007 ident: key 2019022510402741500_B1 article-title: The ribosomal peptidyl transferase publication-title: Mol. Cell doi: 10.1016/j.molcel.2007.03.015 – volume: 54 start-page: 147 year: 2014 ident: key 2019022510402741500_B27 article-title: An mRNA-derived noncoding RNA targets and regulates the ribosome publication-title: Mol. Cell doi: 10.1016/j.molcel.2014.02.024 – volume: 349 start-page: 1191 year: 2015 ident: key 2019022510402741500_B2 article-title: Structural basis of pre-mRNA splicing publication-title: Science doi: 10.1126/science.aac8159 – volume: 6 start-page: 610 year: 2012 ident: key 2019022510402741500_B8 article-title: An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea publication-title: ISME J. doi: 10.1038/ismej.2011.139 – volume: 41 start-page: D262 year: 2013 ident: key 2019022510402741500_B23 article-title: MODOMICS: a database of RNA modification pathways–2013 update publication-title: Nucleic Acids Res. doi: 10.1093/nar/gks1007 – volume: 43 start-page: D130 year: 2015 ident: key 2019022510402741500_B44 article-title: Rfam 12.0: updates to the RNA families database publication-title: Nucleic Acids Res. doi: 10.1093/nar/gku1063 – volume: 43 start-page: D153 year: 2015 ident: key 2019022510402741500_B45 article-title: DIANA-TarBase v7.0: indexing more than half a million experimentally supported miRNA:mRNA interactions publication-title: Nucleic Acids Res. doi: 10.1093/nar/gku1215 – volume: 43 start-page: D743 year: 2015 ident: key 2019022510402741500_B41 article-title: The Rat Genome Database 2015: genomic, phenotypic and environmental variations and disease publication-title: Nucleic Acids Res. doi: 10.1093/nar/gku1026 – volume: 22 start-page: 667 year: 2016 ident: key 2019022510402741500_B20 article-title: Guidelines for the functional annotation of microRNAs using the Gene Ontology publication-title: RNA doi: 10.1261/rna.055301.115 – year: 2016 ident: key 2019022510402741500_B4 article-title: Roles of long noncoding RNAs in chromosome domains publication-title: Wiley Interdiscip. Rev. RNA – volume: 6 start-page: 381 year: 2015 ident: key 2019022510402741500_B18 article-title: The emerging landscape of small nucleolar RNAs in cell biology publication-title: Wiley Interdiscip. Rev. RNA doi: 10.1002/wrna.1284 – volume: 73 start-page: 3075 year: 2016 ident: key 2019022510402741500_B22 article-title: Nucleoside modifications in the regulation of gene expression: focus on tRNA publication-title: Cell. Mol. Life Sci. doi: 10.1007/s00018-016-2217-y – volume: 44 start-page: D717 year: 2016 ident: key 2019022510402741500_B34 article-title: The UCSC Genome Browser database: 2016 update publication-title: Nucleic Acids Res. doi: 10.1093/nar/gkv1275 – volume: 43 start-page: D656 year: 2015 ident: key 2019022510402741500_B11 article-title: PomBase 2015: updates to the fission yeast database publication-title: Nucleic Acids Res. doi: 10.1093/nar/gku1040 – volume: 44 start-page: D710 year: 2016 ident: key 2019022510402741500_B32 article-title: Ensembl 2016 publication-title: Nucleic Acids Res. doi: 10.1093/nar/gkv1157 – volume: 22 start-page: 1040 year: 2014 ident: key 2019022510402741500_B28 article-title: Variation and association to diabetes in 2000 full mtDNA sequences mined from an exome study in a Danish population. Eur publication-title: J. Hum. Genet. doi: 10.1038/ejhg.2013.282 – volume: 26 start-page: 2057 year: 2010 ident: key 2019022510402741500_B38 article-title: Assemble: an interactive graphical tool to analyze and build RNA architectures at the 2D and 3D levels publication-title: Bioinformatics doi: 10.1093/bioinformatics/btq321 – volume: 13 start-page: 33 year: 2016 ident: key 2019022510402741500_B36 article-title: Characterization of novel Bovine Leukemia Virus (BLV) antisense transcripts by deep sequencing reveals constitutive expression in tumors and transcriptional interaction with viral microRNAs publication-title: Retrovirology doi: 10.1186/s12977-016-0267-8 – volume: 17 start-page: 1941 year: 2011 ident: key 2019022510402741500_B5 article-title: RNAcentral: A vision for an international database of RNA sequences publication-title: RNA doi: 10.1261/rna.2750811 – volume: 40 start-page: D735 year: 2012 ident: key 2019022510402741500_B14 article-title: WormBase 2012: more genomes, more data, new website publication-title: Nucleic Acids Res. doi: 10.1093/nar/gkr954 – volume: 12 start-page: 221 year: 2011 ident: key 2019022510402741500_B3 article-title: Vive la différence: biogenesis and evolution of microRNAs in plants and animals publication-title: Genome Biol. doi: 10.1186/gb-2011-12-4-221 – volume: 29 start-page: 2487 year: 2013 ident: key 2019022510402741500_B30 article-title: nhmmer: DNA homology search with profile HMMs publication-title: Bioinformatics doi: 10.1093/bioinformatics/btt403 – volume: 41 start-page: D676 year: 2013 ident: key 2019022510402741500_B10 article-title: DictyBase 2013: integrating multiple Dictyostelid species publication-title: Nucleic Acids Res. doi: 10.1093/nar/gks1064 – volume: 44 start-page: D574 year: 2016 ident: key 2019022510402741500_B33 article-title: Ensembl Genomes 2016: more genomes, more complexity publication-title: Nucleic Acids Res. doi: 10.1093/nar/gkv1209 – volume: 41 start-page: D590 year: 2013 ident: key 2019022510402741500_B7 article-title: The SILVA ribosomal RNA gene database project: improved data processing and web-based tools publication-title: Nucleic Acids Res. doi: 10.1093/nar/gks1219 – year: 2016 ident: key 2019022510402741500_B39 article-title: RNAlien - unsupervised RNA family model construction publication-title: Nucleic Acids Res. doi: 10.1093/nar/gkw558 – volume: 3 start-page: 1 year: 2002 ident: key 2019022510402741500_B42 article-title: The comparative RNA Web (CRW) site: an online database of comparative sequence and structure information for ribosomal, intron, and other RNAs publication-title: BMC Bioinformatics doi: 10.1186/1471-2105-3-1 – volume: 31 start-page: 3377 year: 2015 ident: key 2019022510402741500_B37 article-title: Forna (force-directed RNA): Simple and effective online RNA secondary structure diagrams publication-title: Bioinformatics doi: 10.1093/bioinformatics/btv372 – year: 2016 ident: key 2019022510402741500_B25 article-title: Profiling of 2’-O-Me in human rRNA reveals a subset of fractionally modified positions and provides evidence for ribosome heterogeneity publication-title: Nucleic Acids Res. doi: 10.1093/nar/gkw482 – volume: 53 start-page: 474 year: 2015 ident: key 2019022510402741500_B13 article-title: The Arabidopsis information resource: Making and mining the ‘gold standard’ annotated reference plant genome publication-title: Genesis doi: 10.1002/dvg.22877 – volume: 43 start-page: D123 year: 2015 ident: key 2019022510402741500_B6 article-title: RNAcentral: an international database of ncRNA sequences publication-title: Nucleic Acids Res. doi: 10.1093/nar/gku991 – volume: 44 start-page: D184 year: 2016 ident: key 2019022510402741500_B43 article-title: GtRNAdb 2.0: an expanded database of transfer RNA genes identified in complete and draft genomes publication-title: Nucleic Acids Res. doi: 10.1093/nar/gkv1309 – volume: 42 start-page: D633 year: 2014 ident: key 2019022510402741500_B9 article-title: Ribosomal Database Project: data and tools for high throughput rRNA analysis publication-title: Nucleic Acids Res. doi: 10.1093/nar/gkt1244 – volume: 44 start-page: D385 year: 2016 ident: key 2019022510402741500_B17 article-title: PDBe: improved accessibility of macromolecular structure data from PDB and EMDB publication-title: Nucleic Acids Res. doi: 10.1093/nar/gkv1047 – volume: 11 start-page: e0148940 year: 2016 ident: key 2019022510402741500_B35 article-title: Genome-wide discovery of long non-coding RNAs in rainbow trout publication-title: PLoS One doi: 10.1371/journal.pone.0148940 – volume: 43 start-page: W585 year: 2015 ident: key 2019022510402741500_B26 article-title: The EBI Search engine: providing search and retrieval functionality for biological data from EMBL-EBI publication-title: Nucleic Acids Res. doi: 10.1093/nar/gkv316 – volume: 6 start-page: 426 year: 2013 ident: key 2019022510402741500_B19 article-title: snOPY: a small nucleolar RNA orthological gene database publication-title: BMC Res. Notes doi: 10.1186/1756-0500-6-426 – volume: 8 start-page: e80673 year: 2013 ident: key 2019022510402741500_B29 article-title: Complete mitochondrial DNA diversity in Iranians publication-title: PLoS One doi: 10.1371/journal.pone.0080673 – volume: 12 start-page: 879 year: 2015 ident: key 2019022510402741500_B24 article-title: ARM-seq: AlkB-facilitated RNA methylation sequencing reveals a complex landscape of modified tRNA fragments publication-title: Nat. Methods doi: 10.1038/nmeth.3508
SSID	ssj0014154
Score	2.603137
Snippet	RNAcentral is a database of non-coding RNA (ncRNA) sequences that aggregates data from specialised ncRNA resources and provides a single entry point for... RNAcentral is a database of non-coding RNA (ncRNA) sequences that aggregates data from specialised ncRNA resources and provides a single entry point for...
SourceID	pubmedcentral osti hal proquest pubmed crossref
SourceType	Open Access Repository Aggregation Database Index Database Enrichment Source
StartPage	D128
SubjectTerms	Animals Database Issue Databases, Nucleic Acid genome Genomics Humans nucleotides Nucleotides - chemistry rna RNA, Untranslated - chemistry Sequence Analysis, RNA Species Specificity
Title	RNAcentral: a comprehensive database of non-coding RNA sequences
URI	https://www.ncbi.nlm.nih.gov/pubmed/27794554 https://www.proquest.com/docview/1835681077 https://univoak.hal.science/hal-05259699 https://www.osti.gov/servlets/purl/1343623 https://pubmed.ncbi.nlm.nih.gov/PMC5210518
Volume	45
WOSCitedRecordID	wos000396575500020&url=https%3A%2F%2Fcvtisr.summon.serialssolutions.com%2F%23%21%2Fsearch%3Fho%3Df%26include.ft.matches%3Dt%26l%3Dnull%26q%3D
hasFullText	1
inHoldings	1
isFullTextHit
isPrint
journalDatabaseRights	– providerCode: PRVAON databaseName: DOAJ Directory of Open Access Journals customDbUrl: eissn: 1362-4962 dateEnd: 99991231 omitProxy: false ssIdentifier: ssj0014154 issn: 0305-1048 databaseCode: DOA dateStart: 20050101 isFulltext: true titleUrlDefault: https://www.doaj.org/ providerName: Directory of Open Access Journals – providerCode: PRVASL databaseName: Oxford Journals Open Access Collection customDbUrl: eissn: 1362-4962 dateEnd: 99991231 omitProxy: false ssIdentifier: ssj0014154 issn: 0305-1048 databaseCode: TOX dateStart: 19960101 isFulltext: true titleUrlDefault: https://academic.oup.com/journals/ providerName: Oxford University Press
link	http://cvtisr.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwtV3db9MwELe6ggQvCDY-wqAyaOIBFLZ8OuaJqmOaBJQJFalvUWwntGJLqq4r47_nznbSZAwJkHiJateOU9-v58v57mdC9rwEF5lYuiqKEjcMCu5mSey5Ig4LL2I8KeSBPmyCjcfJdMpPer33dS7M-pSVZXJ5yRf_VdRQB8LG1Nm_EHdzU6iAzyB0uILY4fpHgv88HtqIS5PIjEHjy3xmA9UxIhRXLh3AUZWurHRWC3R61URVtw3WMfIdI6ernCvcYWg5v6yvwGPaV7DxFf4mB7GlcgLNS2q4L1_nRiXqvCre1ZmGAtJi47B-cl1sacNDzyZ-57Zo_Ja_aG3DaFViRPnR12_fkW-o3Q5ma3GmpeUzUB-RYZ2-QpN98nEElgiomGSL3PBZxFHFTT5Nmy0lsFQMl5j9iTZZE8beh5H37bhIDm0H6VgqWzOMk-1XoHevexe5GlLbslEmd8kd-3JBhwYU90gvL7fJzrDMVtXZD_qC6nBfvY-yTW6N6qP-dsjbDWbe0Ix2EENrxNCqoBvEUOhCG8TcJ1-O3k1Gx649WsOVYeivXBXEgYi5THhxUAgRQlHJKPPDLAqUilQWZMjdGUuRxwEawSISmKQcKz_ypSqCB6QPQ-aPCPWUEIIzxTN0TicCFgSVC7h9rnwVFrFDXtbTmErLO4_Hn5ymJv4hSGH6Uzv9DtlrGi8M3cr1zZ6DPJoWSJF-PPyQYh2ey8hjzteeQ3ZRXCmYksiHLDFwTK5SACEgOnDIs1qKKcw2bpNlZV5dnKewyGmWPsYc8tBItRmpxoZDWEfenUfpflPOZ5q13aLz8T_33CW3N__pJ6S_Wl7kT8lNuV7Nz5cDssWmyUC7lAYa-D8BWbS-AQ
linkProvider	Oxford University Press
openUrl	ctx_ver=Z39.88-2004&ctx_enc=info%3Aofi%2Fenc%3AUTF-8&rfr_id=info%3Asid%2Fsummon.serialssolutions.com&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Ajournal&rft.genre=article&rft.atitle=RNAcentral%3A+a+comprehensive+database+of+non-coding+RNA+sequences&rft.jtitle=Nucleic+acids+research&rft.date=2017-01-04&rft.pub=Oxford+University+Press&rft.issn=0305-1048&rft.eissn=1362-4962&rft.volume=45&rft.issue=Database+issue&rft.spage=D128&rft.epage=D134&rft_id=info:doi/10.1093%2Fnar%2Fgkw1008&rft_id=info%3Apmid%2F27794554&rft.externalDocID=PMC5210518
thumbnail_l	http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/lc.gif&issn=0305-1048&client=summon
thumbnail_m	http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/mc.gif&issn=0305-1048&client=summon
thumbnail_s	http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/sc.gif&issn=0305-1048&client=summon